Spg021431 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021431
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	paladin
Location	scaffold4: 450891 .. 453085 (-)
RNA-Seq Expression	Spg021431
Synteny	Spg021431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTATACTGATTACATGGAGATGATCGAGGAGTTCCTCATCCATTCGTCATTTTGTGAGATGGGGAGGTTCTTGTGGCAAGCTGGGGTATAAGCATTGTTATGGAGTCTTTGTGGGAATGAAATAATAATGCTTAGAGGGATGGAAAGTGGCTTGTGTAATTTGTCCCTTACGAGGTTCCATGTATCCCTTTGAGCGTCGGTGATGAAGTTATTTTGTAGTTACTTGTTAGATCTTATTTTGCTTGATTGGAGTCATTTCCTTTAATTGGACTCCTTTTGTGAATTTGTTTTTTGTATGCCCTTATATTCTCACTTTTTTCTCAATGAAAGTTGATTTATTAATAATAAAAAGAACATTTTAGTGATTGAATGTTCGATCTATATTATAAGGATTTGGGGGTATTTAACATTTAATTGCTCTTATATGCTATATTGAAGGGTAAAGTTCATATTGGAAAATATAACAAGATTTAATGTGTTTGTGTTTGAATTTGAACTAGGGAATCGACAGGGCTAGGGTTGAACAAATGGAAGCTCGATTGAAAGAAGACATCTTAATAGAAGCTTCAAGGTATTTTATCTAAGAAAAATGTGTAAAGGTACCAGGGCATGCAAAACTAGTAAAGAGTCTTTAGGGTATGGGTTCAAACCTATAGCTGCCTACTTAAAATATTAAATCCAACTCGACAATCAAAATGCTATAGCCATATAATTTTTTTTAGAAAAACAAACTATAGACAAAAGCTTCCAAGGTTTAGTATATCTATTGGGTATTTTATTTATTTATTTATTTATTTTTATTTTTTTTCTATTGTGTATTTGATATTAAGTAATTGGTTGCTTCTTTCTTTAAAAAATTAATGTGCTATCTTTTATTTTACTCTTGTTTTATTTGATGGCAAATTTTATTTTCAAATCTGACTTAGCAGATGTGGGAATAAGATCCTTGTGACCGATGAAATGCCTGATGGTCAAATGGTAGACCAATGGGAACTGGTGTCTCATGATTCCATCAAATCGCCTCTAGAGGTATCAATATTGTGTTGGAGCATTAGGAGGGAAATAGTGGGAATATTATTAGGAATCTGGATGTCGCGTGTTTATAATTACTTAAATTGACTTGTGTTCATAGTTATAAATAGAGGGAGTTAGAATTTTTGGGTAGGCAGTTTATGGAAAGTAACAAAAATTTGTATTGATATTAAGAGGGAAAATTAAACTATCCCAAACACTTCGAGAGGCTTGGACTCTCCCACAAACTATTTCTAGAAATTGCCTACGTCAACCTTCTGACTCCTATTTGTAATCATAAACACAAACCAATTTCTAAGCATGCAAATATGCCCCTGCTAATATTCTCACTGTTTCTAATGTTCTAACACATCCTATCAAAAAAAAATGTTCTAACATATTAAAACTCAGCTTTAAATTTAGTGTTTTCTTTATCAAAATATCTACATTCAAATCAGCTAAAATTTTTCTTTTGACGTAGGTATATGAAGAATTACAAGTGGAAGGAGTCCATGTAGACTATGAACGTGTCCCAATAACTGATGAAAAGTCGCCCAAAGAGATGGATTTTGATATCCTGGTGAGTTTTTAGTGTTGTAAACTCTTAATATACCAATTTTGTTGCTTCCTAGTTTCAGTATGTGTTCATGCATTACGTAAGGTAGGTTTTGTTGAAACTCTTTTACATTACGAGATGGGAATTTTTTTCTTCAATTAAGGTGTCTCCATGCTTCAATAAGTATTTTCTTTTATCTGGAAAGTCAAAGTCGTAGTTGTAGGAGGATAGAAACCATTCTTCTCTCTCCTTTTTTTTTCTTTTCATTTTTTGTTAGGTCTTGAAGATTCAAAGATTATTTCAATTCAAGCACGTGCTCAAGTTCTTCTCTGATAATTATCTTTTCATTAAAAAAAAAAATTATGGATTTAAGTCTTTGTTGCCCGGAAAACGAGAATTTTTTCATTCGATTGTCTAATGGTGGATTAACGTTAGAAGAAAAGGAAGAAAGAGCTTTCATAGGTTTCTTCTTAAGGATGGTGTCTGCCTGTATTTCAAATATAGTTCTGCTGTTATTGTCAATCCCAAGGGTGAGATGTAAGGTTTGGCTATTACCAGCCCCATCAGGAAGGATTGCGCTGAGCACTGCCCAAGAATTGCAACTGCTGCTAACGTCAGTGTGA

mRNA sequence

ATGAACTATACTGATTACATGGAGATGATCGAGGAGTTCCTCATCCATTCGTCATTTTGTGAGATGGGGAGGTTCTTGTGGCAAGCTGGGGGAATCGACAGGGCTAGGGTTGAACAAATGGAAGCTCGATTGAAAGAAGACATCTTAATAGAAGCTTCAAGATGTGGGAATAAGATCCTTGTGACCGATGAAATGCCTGATGGTCAAATGGTAGACCAATGGGAACTGGTGTCTCATGATTCCATCAAATCGCCTCTAGAGGTATATGAAGAATTACAAGTGGAAGGAGTCCATGTAGACTATGAACGTGTCCCAATAACTGATGAAAAGTCGCCCAAAGAGATGGATTTTGATATCCTGGTTTGGCTATTACCAGCCCCATCAGGAAGGATTGCGCTGAGCACTGCCCAAGAATTGCAACTGCTGCTAACGTCAGTGTGA

Coding sequence (CDS)

ATGAACTATACTGATTACATGGAGATGATCGAGGAGTTCCTCATCCATTCGTCATTTTGTGAGATGGGGAGGTTCTTGTGGCAAGCTGGGGGAATCGACAGGGCTAGGGTTGAACAAATGGAAGCTCGATTGAAAGAAGACATCTTAATAGAAGCTTCAAGATGTGGGAATAAGATCCTTGTGACCGATGAAATGCCTGATGGTCAAATGGTAGACCAATGGGAACTGGTGTCTCATGATTCCATCAAATCGCCTCTAGAGGTATATGAAGAATTACAAGTGGAAGGAGTCCATGTAGACTATGAACGTGTCCCAATAACTGATGAAAAGTCGCCCAAAGAGATGGATTTTGATATCCTGGTTTGGCTATTACCAGCCCCATCAGGAAGGATTGCGCTGAGCACTGCCCAAGAATTGCAACTGCTGCTAACGTCAGTGTGA

Protein sequence

MNYTDYMEMIEEFLIHSSFCEMGRFLWQAGGIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYEELQVEGVHVDYERVPITDEKSPKEMDFDILVWLLPAPSGRIALSTAQELQLLLTSV

Homology

[Close]

BLAST of Spg021431 vs. NCBI nr
Match: KAG7013719.1 (Paladin [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 8.0e-41
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 128 GIDRARVEQMEARLKEDILIEASRYGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 187

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQVEGVHVDYERVP+TDEKSPKE DFDILV
Sbjct: 188 ELQVEGVHVDYERVPVTDEKSPKESDFDILV 218

[Close]

BLAST of Spg021431 vs. NCBI nr
Match: XP_022959171.1 (paladin isoform X1 [Cucurbita moschata])

HSP 1 Score: 177.6 bits (449), Expect = 8.0e-41
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 128 GIDRARVEQMEARLKEDILIEASRYGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 187

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQVEGVHVDYERVP+TDEKSPKE DFDILV
Sbjct: 188 ELQVEGVHVDYERVPVTDEKSPKESDFDILV 218

[Close]

BLAST of Spg021431 vs. NCBI nr
Match: XP_023006486.1 (paladin isoform X2 [Cucurbita maxima])

HSP 1 Score: 177.6 bits (449), Expect = 8.0e-41
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 128 GIDRARVEQMEARLKEDILIEASRYGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 187

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQVEGVHVDYERVP+TDEKSPKE DFDILV
Sbjct: 188 ELQVEGVHVDYERVPVTDEKSPKESDFDILV 218

[Close]

BLAST of Spg021431 vs. NCBI nr
Match: XP_022158705.1 (paladin isoform X1 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 8.0e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDE+PDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 120 GIDRARVEQMEARLKEDILIEASRYGNKILVTDELPDGQMVDQWELVSHDSIKSPLEVYE 179

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQV+GVHVDYERVP+TDEKSPKEMDFDILV
Sbjct: 180 ELQVDGVHVDYERVPVTDEKSPKEMDFDILV 210

[Close]

BLAST of Spg021431 vs. NCBI nr
Match: XP_023548257.1 (paladin isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 8.0e-41
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 128 GIDRARVEQMEARLKEDILIEASRYGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 187

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQVEGVHVDYERVP+TDEKSPKE DFDILV
Sbjct: 188 ELQVEGVHVDYERVPVTDEKSPKESDFDILV 218

[Close]

BLAST of Spg021431 vs. ExPASy TrEMBL
Match: A0A6J1L094 (paladin isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499203 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.9e-41
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 128 GIDRARVEQMEARLKEDILIEASRYGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 187

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQVEGVHVDYERVP+TDEKSPKE DFDILV
Sbjct: 188 ELQVEGVHVDYERVPVTDEKSPKESDFDILV 218

[Close]

BLAST of Spg021431 vs. ExPASy TrEMBL
Match: A0A6J1KXW3 (paladin isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499203 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.9e-41
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 128 GIDRARVEQMEARLKEDILIEASRYGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 187

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQVEGVHVDYERVP+TDEKSPKE DFDILV
Sbjct: 188 ELQVEGVHVDYERVPVTDEKSPKESDFDILV 218

[Close]

BLAST of Spg021431 vs. ExPASy TrEMBL
Match: A0A6J1DWJ7 (paladin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025168 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.9e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDE+PDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 120 GIDRARVEQMEARLKEDILIEASRYGNKILVTDELPDGQMVDQWELVSHDSIKSPLEVYE 179

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQV+GVHVDYERVP+TDEKSPKEMDFDILV
Sbjct: 180 ELQVDGVHVDYERVPVTDEKSPKEMDFDILV 210

[Close]

BLAST of Spg021431 vs. ExPASy TrEMBL
Match: A0A6J1E1R1 (paladin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025168 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.9e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDE+PDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 120 GIDRARVEQMEARLKEDILIEASRYGNKILVTDELPDGQMVDQWELVSHDSIKSPLEVYE 179

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQV+GVHVDYERVP+TDEKSPKEMDFDILV
Sbjct: 180 ELQVDGVHVDYERVPVTDEKSPKEMDFDILV 210

[Close]

BLAST of Spg021431 vs. ExPASy TrEMBL
Match: A0A6J1H3T5 (paladin isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460243 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.9e-41
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GIDRARVEQMEARLKEDILIEASR GNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE
Sbjct: 128 GIDRARVEQMEARLKEDILIEASRYGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 187

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQVEGVHVDYERVP+TDEKSPKE DFDILV
Sbjct: 188 ELQVEGVHVDYERVPVTDEKSPKESDFDILV 218

[Close]

BLAST of Spg021431 vs. TAIR 10
Match: AT3G62010.1 (unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). )

HSP 1 Score: 151.0 bits (380), Expect = 7.5e-37
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GI+R RVEQMEARLKEDIL+EASR GNKILVTDE+PDGQMVDQWE VS DS+K+ LEVYE
Sbjct: 119 GINRVRVEQMEARLKEDILMEASRYGNKILVTDELPDGQMVDQWEPVSTDSLKTLLEVYE 178

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQ EG  VDYERVPITDEKSPKE DFD+L+
Sbjct: 179 ELQAEGYLVDYERVPITDEKSPKETDFDLLI 209

[Close]

BLAST of Spg021431 vs. TAIR 10
Match: AT3G62010.2 (unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages. )

HSP 1 Score: 151.0 bits (380), Expect = 7.5e-37
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 31  GIDRARVEQMEARLKEDILIEASRCGNKILVTDEMPDGQMVDQWELVSHDSIKSPLEVYE 90
           GI+R RVEQMEARLKEDIL+EASR GNKILVTDE+PDGQMVDQWE VS DS+K+ LEVYE
Sbjct: 119 GINRVRVEQMEARLKEDILMEASRYGNKILVTDELPDGQMVDQWEPVSTDSLKTLLEVYE 178

Query: 91  ELQVEGVHVDYERVPITDEKSPKEMDFDILV 122
           ELQ EG  VDYERVPITDEKSPKE DFD+L+
Sbjct: 179 ELQAEGYLVDYERVPITDEKSPKETDFDLLI 209

The following BLAST results are available for this feature:

BLAST of Spg021431 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013719.1	8.0e-41	96.70	Paladin [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022959171.1	8.0e-41	96.70	paladin isoform X1 [Cucurbita moschata]	[more]
XP_023006486.1	8.0e-41	96.70	paladin isoform X2 [Cucurbita maxima]	[more]
XP_022158705.1	8.0e-41	95.60	paladin isoform X1 [Momordica charantia]	[more]
XP_023548257.1	8.0e-41	96.70	paladin isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg021431 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg021431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L094	3.9e-41	96.70	paladin isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499203 PE=4 SV=1	[more]
A0A6J1KXW3	3.9e-41	96.70	paladin isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499203 PE=4 SV=1	[more]
A0A6J1DWJ7	3.9e-41	95.60	paladin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025168 PE=4 SV=1	[more]
A0A6J1E1R1	3.9e-41	95.60	paladin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025168 PE=4 SV=1	[more]
A0A6J1H3T5	3.9e-41	96.70	paladin isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460243 PE=4 SV=1	[more]

BLAST of Spg021431 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62010.1	7.5e-37	82.42	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant ...	[more]
AT3G62010.2	7.5e-37	82.42	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM01301	PTPlike_phytase_2	coord: 13..144 e-value: 6.1E-17 score: 72.3
None	No IPR available	PFAM	PF14566	PTPlike_phytase	coord: 29..123 e-value: 7.7E-21 score: 74.8
None	No IPR available	PANTHER	PTHR23339:SF104	METAL ION-BINDING PROTEIN	coord: 30..122
None	No IPR available	PANTHER	PTHR23339	TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE	coord: 30..122
IPR029021	Protein-tyrosine phosphatase-like	GENE3D	3.90.190.10	Protein tyrosine phosphatase superfamily	coord: 16..133 e-value: 3.9E-19 score: 71.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021431.1	Spg021431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035335	peptidyl-tyrosine dephosphorylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004725	protein tyrosine phosphatase activity