Spg021414 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021414
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPlus3 domain-containing protein
Locationscaffold4: 511157 .. 514304 (+)
RNA-Seq ExpressionSpg021414
SyntenySpg021414
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGAAAGTTTCTTTTTATCAAATGAAGATGATTTGATGATTGTTATTGAGGATTCAAAGGTCCCTATGGTGCATGGAAAACAATTTAATTCAGATGACCTTGATATGTTAAAAGACATTCATTTTGTTGGGTATGCAAGCATTAATCCTCTTGGTTCCAATGTGGTTATTGATGCCTCTGATTTCATTGGACTTCTTTACATTTAAAAGTTACAAGATTTATAAAAGCTTACCCTCTGCATTATTTTTGGAAAAAAAGTATTTCCTTCTCATTGAATATTCAGAGTCTAATTTAGATGCTTGAGGAATCTTGTGGTCGTCTTTTGACTCACCCAACAAATTCGTTGGCCTTTCACTAAAGGTTCTGAGTTGTAATAGTCTTTATATTCTACTAAGAGTTGTAGTCAATCACAATTTACTTTTCCTGGTTTAAACAATACAATTCACCAAAGGTGTCACAAACCTCTCAACACCTAAGAAGTATCGTTCTTGCATTGATTTAGATAGGAAATCAGATGTTAGTATGAGTAGTGAGGAATCAATTTCTCATATACCGAAAACAGAGCTTGTTGATCAGTTTGTAGATATAATTTGCAAAAGCATTTGAAAATCTATTTGAAGGTAATGAGCAAGGTGATGTTTATGGTGGAGTAGTTTCATTGGTGATTTCTCCCTAAATTCTAGCTAAATTTTCTTCTCTTGTTGAGATCTATTGATTTCATACGCGAGCAATTCTCAATCTATCACGAATAGTTGAAGCTCTTTAGTGTTAACCTTGTTTGCTCAATAATGTATTTCTCATAGAATAGGCTCTAAAAGTTGAGCACTTGTAAGATCTCATTGGTGCAGATATTCAAAAGTTACGGGTATTTTTGTTTGGGATCCATCTTTTTCTCGTTTTCTTATCATTCGTTTATATTAGTCGGAACGTCTTCTTCCAGATTGATCTCTTTGACGGGCAAGGTTTGTTTTGGTTCTAATCTCAGTATTCTGAAGGATGTCTTCAAGTTTTGGTTTTCTACTTATGAAGAAAGGAGGCTTCAAGTTAATCCAGTCTCATCTCTGATTATACTTGATTTGTTGTTAATTTTGTTGGTTTAAAAGATTAGAAGCTGCCCATCTTGAGGCCTATTCATGGAGCTCCTTCTCAAAGCCTTCTGTTGGTTTTCTCTCCAAGTTCTTTTTATTGTTGTTTGGTTTTGTCCTTTTGTCTTTTTGTTTTTTTTTTTGTTTTTTTTGTTTTTTTCATTTGGCCTTTGTTGTCTTTGTTTTCTCAGTTTGGTCTTTTTTTTATTTTTTTATTTTTTTTGCCATGGCTATGTTGCAGGAGGAATGTAAAGATCTGGATCTGAGAGTAAAACACGGCTTGGTCAAGAGATTAACTATTGTAAGTTTTTCTTTTGTCGCTCAAAGGGTCCTTTGCTTCTCTTAATTGGCAAAGTTAGTCCTTTATTGCTAATTTCAATATGATAATTGAAATTCTCCCACTATTTCTTTTTTGAAAAGGAAACAATAATATCATTAATAAAGAGAAGAAATAGAGGGATAAAAAATCAATCCTACAAAGAGTAGACTTTGAACAAAAGAAAGCTAAGAAAAGATAGGAAACAAACTAAAACAAAAGCTAACAAAAGAACAAAGAAAGCCACAGAAAAAAGAAACATAAACCCATAGAGCTACAAGAAAGCTTCCTAATTGCTACAAATAACTTGGAAAGAGTAACTTGAAAAAGTTATCAAAAAAAGAACACCAACGACAAGACTTAACCTTGAAGCATTGATCCATAATAATTTGGCTTTGATGGAAAAATCTGGAACACAAAGTAAATGAAGTCCTCCCAGTCTATTAAGATTATGTTTGTCGAAATGGTCTGAGATGATTTCTGTGATGGTATGAGATGAAGAAGGTAAGCATAGACTTTAAATGTTTTTCCTTAGAAAAGTAGTTGTGGAAGAAAGGTGTCTATGAAAGAGAATGGGGGAGATGTGTGGCGAGTTTAGAGTTGGAGTTAGGAACAGTGGCGTGGTTGTGAGATTGCCTGAGGGGTGCTTTTAGTTCATGAAGTGTTATTCCTTTCAACCTTAACTGGGCCACGGTTTCAAACGTTCAGAATGTTAGATCATATTGGGCCATGGTTTCAAATTGGGTCAACGTTTCATCCCTAAATTTTCCTTTTTGCCAGTCAGATGGGGAAGGTCTTAATCATATCTTCTTTGATTGTTCATATCTCGAGCTTGTTGGATCAAATTTTTCTTCGTCCTATTTCACATTTGGTGGGTTTTCTCCTCTCCAATATCTTCAAGGAGAATGTTCTTCATTTACTTATTAGCTCCCCTTTGGTTCTAAGGGTGAACTTATTACGGGTTAATGGAGCTTAAGCTCTTTTGTTAGATTTGTGGTCCAAGCAAAATAAAAAATATTTCCAAGATAAGTCTGTTTTGGATTAATGCTGACGAATCCATATTTTCAGTTTTTGGTATGAAATGAATCGTTATTTTGAAGACAAGTCTGTTTGGGTGGAGGGTTTTAGCCTTTTTCAAAGCTTCACGATGGTGCTTGCTGTCTATGTTATCCAATCATTTCCTCGGAATATCTTTACAATTTGGGAGGCTTTCACTTTCCCTCGTTAGCATTTTGTATTTTCTTTACTTTTCTCTCGCACGTAGGAGTTTGTTTCCTTTGAAAATCTTTTAATTTTTCATTATATCAGTAGAAGTTAAAAAAATAAAAAAGAAATGCATTTTTCTCAAATGGTGGGTGGCATACGCTTATGTTATTGATTCAAGTATTTAAAATTTTTTGCTATGGTTTCAAAGTTATAAGAGCATTGATCAACTTAAATTTTGTTAAGGTCTTCAACATGTGAATGATATTATGAGCATTGATGTATAATGTTAATGTGAAGTACTCTCTTCTGTTTGCAATCATGGATACCTTTCCCTAAATGTAGTGTGGAGAAGCTCTTTACATCTCTCTTACCAGTTGTAGATTATTTCTCTTATTTATATGTGCTCATTTTTCATTTTGGTAGGCAGAGTTTCAACACAAAGTTGAGGTCTTGCATGTGGATATTACTAAGCATGTACGTATGATAACTTCAAATTTTTGCATTGGTGAGAGGGCTGCTGGCATTTTTCTTTAA

mRNA sequence

ATGGAAGATGAAAGTTTCTTTTTATCAAATGAAGATGATTTGATGATTGTTATTGAGGATTCAAAGGTCCCTATGGTGCATGGAAAACAATTTAATTCAGATGACCTTGATATGTTAAAAGACATTCATTTTGTTGGATTGATCTCTTTGACGGGCAAGGAGGAATGTAAAGATCTGGATCTGAGAGTAAAACACGGCTTGGTCAAGAGATTAACTATTGCAGAGTTTCAACACAAAGTTGAGGTCTTGCATGTGGATATTACTAAGCATGTACGTATGATAACTTCAAATTTTTGCATTGGTGAGAGGGCTGCTGGCATTTTTCTTTAA

Coding sequence (CDS)

ATGGAAGATGAAAGTTTCTTTTTATCAAATGAAGATGATTTGATGATTGTTATTGAGGATTCAAAGGTCCCTATGGTGCATGGAAAACAATTTAATTCAGATGACCTTGATATGTTAAAAGACATTCATTTTGTTGGATTGATCTCTTTGACGGGCAAGGAGGAATGTAAAGATCTGGATCTGAGAGTAAAACACGGCTTGGTCAAGAGATTAACTATTGCAGAGTTTCAACACAAAGTTGAGGTCTTGCATGTGGATATTACTAAGCATGTACGTATGATAACTTCAAATTTTTGCATTGGTGAGAGGGCTGCTGGCATTTTTCTTTAA

Protein sequence

MEDESFFLSNEDDLMIVIEDSKVPMVHGKQFNSDDLDMLKDIHFVGLISLTGKEECKDLDLRVKHGLVKRLTIAEFQHKVEVLHVDITKHVRMITSNFCIGERAAGIFL
Homology
[Close]
BLAST of Spg021414 vs. NCBI nr
Match: XP_022148065.1 (uncharacterized protein At5g08430 isoform X4 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 53  KEECKDLDLRVKHGLVKRLTIAEFQHKVEVLHVDITKH 91
           +EECKDLDLRVKHGLVKRLT+AEFQ KVEVLHVDITKH
Sbjct: 153 EEECKDLDLRVKHGLVKRLTVAEFQQKVEVLHVDITKH 190

[Close]
BLAST of Spg021414 vs. NCBI nr
Match: XP_022148062.1 (uncharacterized protein At5g08430 isoform X1 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 53  KEECKDLDLRVKHGLVKRLTIAEFQHKVEVLHVDITKH 91
           +EECKDLDLRVKHGLVKRLT+AEFQ KVEVLHVDITKH
Sbjct: 256 EEECKDLDLRVKHGLVKRLTVAEFQQKVEVLHVDITKH 293

[Close]
BLAST of Spg021414 vs. NCBI nr
Match: XP_022148064.1 (uncharacterized protein At5g08430 isoform X3 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 53  KEECKDLDLRVKHGLVKRLTIAEFQHKVEVLHVDITKH 91
           +EECKDLDLRVKHGLVKRLT+AEFQ KVEVLHVDITKH
Sbjct: 198 EEECKDLDLRVKHGLVKRLTVAEFQQKVEVLHVDITKH 235

[Close]
BLAST of Spg021414 vs. NCBI nr
Match: XP_022969376.1 (uncharacterized protein At5g08430 isoform X2 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 18  IEDSKVPMVHGKQFNSDDLDMLKDIHFVGLIS--LTGKEECKDLDLRVKHGLVKRLTIAE 77
           ++   +P   G +F     +++KD+  +G++S     +EECKDLDLRVK GLVKRLTIAE
Sbjct: 117 VKKVSIPGDLGTRFLLHVSNVMKDVG-IGMLSDEKFSEEECKDLDLRVKSGLVKRLTIAE 176

Query: 78  FQHKVEVLHVDITKH 91
            Q KVE LHVDITKH
Sbjct: 177 VQQKVEALHVDITKH 190

[Close]
BLAST of Spg021414 vs. NCBI nr
Match: XP_022969375.1 (uncharacterized protein At5g08430 isoform X1 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 18  IEDSKVPMVHGKQFNSDDLDMLKDIHFVGLIS--LTGKEECKDLDLRVKHGLVKRLTIAE 77
           ++   +P   G +F     +++KD+  +G++S     +EECKDLDLRVK GLVKRLTIAE
Sbjct: 220 VKKVSIPGDLGTRFLLHVSNVMKDVG-IGMLSDEKFSEEECKDLDLRVKSGLVKRLTIAE 279

Query: 78  FQHKVEVLHVDITKH 91
            Q KVE LHVDITKH
Sbjct: 280 VQQKVEALHVDITKH 293

[Close]
BLAST of Spg021414 vs. ExPASy Swiss-Prot
Match: Q9FT92 (Uncharacterized protein At5g08430 OS=Arabidopsis thaliana OX=3702 GN=At5g08430 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 0 

Query: 29  KQFNSDDLDMLKDIHFVGLISLT-------GKEECKDLDLRVKHGLVKRLTIAEFQHKVE 88
           K+  +DD  +L+  ++V  +S++        +EEC+DL  R+K+GL+K+ TI E + K +
Sbjct: 210 KEHGTDDF-LLQVTNYVKDVSISVLSDDNFSQEECEDLHQRIKNGLLKKPTIVEMEEKAK 269

Query: 89  VLHVDITKH 91
            LH D TKH
Sbjct: 270 KLHKDQTKH 277

[Close]
BLAST of Spg021414 vs. ExPASy TrEMBL
Match: A0A6J1D1W3 (uncharacterized protein At5g08430 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111016836 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 53  KEECKDLDLRVKHGLVKRLTIAEFQHKVEVLHVDITKH 91
           +EECKDLDLRVKHGLVKRLT+AEFQ KVEVLHVDITKH
Sbjct: 153 EEECKDLDLRVKHGLVKRLTVAEFQQKVEVLHVDITKH 190

[Close]
BLAST of Spg021414 vs. ExPASy TrEMBL
Match: A0A6J1D418 (uncharacterized protein At5g08430 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016836 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 53  KEECKDLDLRVKHGLVKRLTIAEFQHKVEVLHVDITKH 91
           +EECKDLDLRVKHGLVKRLT+AEFQ KVEVLHVDITKH
Sbjct: 256 EEECKDLDLRVKHGLVKRLTVAEFQQKVEVLHVDITKH 293

[Close]
BLAST of Spg021414 vs. ExPASy TrEMBL
Match: A0A6J1D2W8 (uncharacterized protein At5g08430 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016836 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 53  KEECKDLDLRVKHGLVKRLTIAEFQHKVEVLHVDITKH 91
           +EECKDLDLRVKHGLVKRLT+AEFQ KVEVLHVDITKH
Sbjct: 198 EEECKDLDLRVKHGLVKRLTVAEFQQKVEVLHVDITKH 235

[Close]
BLAST of Spg021414 vs. ExPASy TrEMBL
Match: A0A6J1HZR7 (uncharacterized protein At5g08430 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468398 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 18  IEDSKVPMVHGKQFNSDDLDMLKDIHFVGLIS--LTGKEECKDLDLRVKHGLVKRLTIAE 77
           ++   +P   G +F     +++KD+  +G++S     +EECKDLDLRVK GLVKRLTIAE
Sbjct: 220 VKKVSIPGDLGTRFLLHVSNVMKDVG-IGMLSDEKFSEEECKDLDLRVKSGLVKRLTIAE 279

Query: 78  FQHKVEVLHVDITKH 91
            Q KVE LHVDITKH
Sbjct: 280 VQQKVEALHVDITKH 293

[Close]
BLAST of Spg021414 vs. ExPASy TrEMBL
Match: A0A6J1HXL9 (uncharacterized protein At5g08430 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468398 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 0 

Query: 18  IEDSKVPMVHGKQFNSDDLDMLKDIHFVGLIS--LTGKEECKDLDLRVKHGLVKRLTIAE 77
           ++   +P   G +F     +++KD+  +G++S     +EECKDLDLRVK GLVKRLTIAE
Sbjct: 117 VKKVSIPGDLGTRFLLHVSNVMKDVG-IGMLSDEKFSEEECKDLDLRVKSGLVKRLTIAE 176

Query: 78  FQHKVEVLHVDITKH 91
            Q KVE LHVDITKH
Sbjct: 177 VQQKVEALHVDITKH 190

[Close]
BLAST of Spg021414 vs. TAIR 10
Match: AT5G08430.1 (SWIB/MDM2 domain;Plus-3;GYF )

HSP 1 Score: 48.5 bits (114), Expect = 3.9e-06
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 0 

Query: 29  KQFNSDDLDMLKDIHFVGLISLT-------GKEECKDLDLRVKHGLVKRLTIAEFQHKVE 88
           K+  +DD  +L+  ++V  +S++        +EEC+DL  R+K+GL+K+ TI E + K +
Sbjct: 210 KEHGTDDF-LLQVTNYVKDVSISVLSDDNFSQEECEDLHQRIKNGLLKKPTIVEMEEKAK 269

Query: 89  VLHVDITKH 91
            LH D TKH
Sbjct: 270 KLHKDQTKH 277

[Close]
BLAST of Spg021414 vs. TAIR 10
Match: AT5G63700.1 (zinc ion binding;DNA binding )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 53  KEECKDLDLRVKHGLVKRLTIAEFQHKVEVLHVDITKH 91
           +EE KDL  +V +GL+++ T+ E + K + LH DITKH
Sbjct: 489 EEEIKDLKQKVMNGLLRQTTVVEMEQKAKALHYDITKH 526

The following BLAST results are available for this feature:
BLAST of Spg021414 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022148065.12.5e-1092.11uncharacterized protein At5g08430 isoform X4 [Momordica charantia][more]
XP_022148062.12.5e-1092.11uncharacterized protein At5g08430 isoform X1 [Momordica charantia][more]
XP_022148064.12.5e-1092.11uncharacterized protein At5g08430 isoform X3 [Momordica charantia][more]
XP_022969376.13.5e-0953.33uncharacterized protein At5g08430 isoform X2 [Cucurbita maxima][more]
XP_022969375.13.5e-0953.33uncharacterized protein At5g08430 isoform X1 [Cucurbita maxima][more]
BLAST of Spg021414 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FT925.5e-0537.68Uncharacterized protein At5g08430 OS=Arabidopsis thaliana OX=3702 GN=At5g08430 P... [more]
BLAST of Spg021414 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D1W31.2e-1092.11uncharacterized protein At5g08430 isoform X4 OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1D4181.2e-1092.11uncharacterized protein At5g08430 isoform X1 OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1D2W81.2e-1092.11uncharacterized protein At5g08430 isoform X3 OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1HZR71.7e-0953.33uncharacterized protein At5g08430 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1HXL91.7e-0953.33uncharacterized protein At5g08430 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
BLAST of Spg021414 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G08430.13.9e-0637.68SWIB/MDM2 domain;Plus-3;GYF [more]
AT5G63700.11.3e-0447.37zinc ion binding;DNA binding [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021414.1Spg021414.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding