Spg021393 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021393
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosomal protein
Location	scaffold6: 45567504 .. 45571222 (-)
RNA-Seq Expression	Spg021393
Synteny	Spg021393

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCAGCCTCCCAACCAACTAGCCGGCGCTCCCTCCCTCTCACACTCTCTCGCCTCTTCGAGCAATCAGAAACAGTGGTTCAGCCCCTACCTACGCCGTTGGTGAGATCGCACCGCCTCTCATTTTTCACATCCCCAAGGTTTTGAGTTTTTGTTTTATTGTTTTTATTTTGGTTTGTGGATTTACTGTCTTCACCCACAAAGAAGGAAATCAAGAGAAGTAAAATTTTGTTTTATTTCTTCTTCAACCAATGTTCGACCAATCCAAATGAAAACATAAAACTAAAAATGTAGACATCACAGATTAGGGGAAAAAACTGATTGAATCATCAATAAATAAAAAGGAACAAAAGAACATATTACTCTCATCCGAATGAATTAACCAAAGCAAGAAGGAAAACTCACCTGTATGTAGTTTGCAGAAGAGTTTTGGTGCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGACGAAATGGGGTTGTTACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGCATTAAGAAGCTCGATGGAAGATATTATCAGGTGATCTTTCAAATCTGTTATTTCCTGTTGAAGCTTTTATCATCCTCCTTTTGTTGTTTTTGTAGTTGGGTTGTATCTGTAAATTTCATTAACATTGTGTCAATTGAGCATTGGATGAATTTAATTACCTTGTTCATATTTACTTCTATTGTTTCAAAGGGGATAAAAGTGGCTGTGGTTGATTGATTTATTGTGTTTGATTAAGATGGAAGGAATAACGGTTTCTTTTGAGTTTGGTTGAGTCGAAGTTCACAGTAAACCTTCATACGGAAGAACTGCAAATCATTCAAATTGTGGATTCATTTTTCCATACTACTTGCTCATTGTTAATAATATAGCTTTTGATGTTGGAATGAATGTCAATTGTCGAATTATTTTCATTATTGTGCATTTTGATTTATAGTTTTGAGAAATGGATATTTCATTTCTTCATTGAGACATTGAATGGATTGCACTTATCTTAAAAAAAAAAAAGGTATTCTGCATCTGCAATGAGTTTTTATGTCAGCATTATATTTCTTTTTGTATCTTTTGAAGTTGATTTTAGCCCTAGTAGTATGGCTCTTGACATCCTCAAAGAAATTTTATGTGATTTTGTGATTTCTTTCTTATGAAGTAGATGTGTTTTTTCAGTTTCAGGCTTTTGTATGTTAACTCTATCTGATGCTTTTCAATGAAGAAGCAGTGACCCTAATAAGCCCTCTTTGAACAATTGGGAAACTTTATTAGTTATTAGTTACTGCACGTATTTTTTCATTTACTTAATGGGTGGTAAGACTGTCCTTATTCAAGGGAACATCGTTATCTATACTCCTAATATAGATGGGGAGTCGAAATTCATTAGTTACTACTTAGTTTGAACAACCATAAGAACCTAATTTTATTAGGGTACTTCAACAGATCTACGTACTAAATTTTCCATATGGCCTTTGATAAACTCATAATACTGTATGGAGTCTTAGAATTTAGGTGAAAAAAGCCGTAAAGAACAACTAGAGGTTCATATAAGCCATGATAGGGAATTTTGACCAGCAATCTAGTCAACTGTGCCGATCATCAAAAGTTGCTCATTCATTTCCTTATCCATTAAATTCCTGTCGAACTGTATATTCAATCAGTATTGTAACTACATGGTTGAACCAGACAAGATCCAGAACGAACCATTTTGTAATTTGTATAATCTGGGGAAAAAGAATTAGGCTCTGATCACCAACTCGGATGTCATCCCAAGACAAAGTATTACCGTTGCTACCAACTGTTATCTTTGAGAAGTTATAAAATTTTCTCACAACTGGAAATAAAGATCCAAGGAAGTCTACCACCACTTGTGCCTTTGTTTTTTTTTTTTTAATAATTTAACCAACCAGTTGAACTCATCTAATCTCGTCGCCTATTTATGCTTTAACTCTCTCTTACATTGAAACTGCCACACACCCACCCTTAAAAGGAAGGGCCACACTTTTAGAGTTACCTTGCCTCAACCTCTCTTCTTCTTGGCTCAGAACCACGGACCTCTAATCTATGAGGTGGTTCTTCCTTCATGATTGTTGCCACCTCAAACGAAGCTTCTGATCTTTTAATTTAAATCATCTAGCCACCTTATTAGGGACCTAAACAATAGGAAAAAAAAAAAAAAGAGTTGGAATGCTTGAGAAGACTGCTTGGACAAGGTTAAGCAATCTCCTTTAAGCGGTTGTAGTTATGTTATGATATTACTTTGGACGGGTTGAAAAATATGCTTACAAGCCTGAATGGTTTAAATGTTATTCCATCCCCTTTGTTTTAGTTGAAGTAGCCCTTGCAAAGAAAGGACGCATAACCATATGTTGTATATTTGTACTAACTAGCTGACTATTAGTCCTACACATACTCTGCTGTGCATCGTGTACACAATATCCCAAGAGTTCTAAACTACAACTTGTTTCATCAGATGTATTGTGAAGTTTCCTGACTTTGTTGTGGATATTTGAATCAATCAATGACATTGTTACTCTTTCTTTTATGGTAAAGGGCCAACTTATGCAGATGACAGTGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGTTGGCTTTTGGTGAAGCATCGTGACGCAAAATATGGCTTGGAATTCCTTAGTGAAGATGATGGAAAGAGTGAACTCAACAAATTTCCTCGAACTGACTTCTTTGGTGATGATGATGACGATAAAGAAGATGATGACGATGAAGAATACGACGTGGAACAAGAAGAGAGGAAACCAGAGTGAATTTTTCTTGTCTCTATTATCATAGCCCAAGTTCGAACTTGTTGAAGGACCTCTGGAACCATTCTTGTGATTCTAGATAGACAAATAAAGAGAGGTCCATAGTTTCTTTAGTTGTCCATATCATTTGGTTCTCAGAAGCAAAGATCTATAAATGTCTTTTTCCTATACTTCCATTAGAATGGGATGTTTGGGAGATGTTTTCCGGTCTTCGATTCGAGCCTCTAGATCAAAAGTTTATGAAATGAAAATCCATGTGATCTTATAAAGTTGGTGTACTGTAATCTTGCTTGTATTGACATAGTATGGAATGAAACTAGAGCAAATATGGGGATCGTTGGAGAAGAAAAGGTTGAGATCAGCAACACTTTTGTTTCAATATTCAGTTCAAGTATGGTTTTAGTTCTTGAATTTCTTGTTATTTTCTACGGTTGAATATTCTGTTTGAAATTAAAAAGAAATGAAATTGAGACTTTAAGCTAGAATTGCCAAGTTTATTGTTGAATTATATTTGATGCTCGTTATTTTTAAAGTATTAAAGTCTTTTTTTTTTTTTTTTGGAAATATTAAAGTATTGAAGTTAGAGTTTAGGTTGGCATATCCTAAGATCTATAGGACTCACAATAATGAAATTTATATCTATACTATATTAAAAAGTGAGGATGTTGGAAAAACATTTTTGGACACTTTTGTCCTTTTTTTGATTTACTAAATTACAAGATATGCCATTAACGATTAATTATAAATAATATATTAATTAATTAATAACTAATTATCAATAATAAATTTATAGAATCTTAAAGGTTA

mRNA sequence

ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGACGAAATGGGGTTGTTACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGCATTAAGAAGCTCGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACAGTGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGTTGGCTTTTGGTGAAGCATCGTGACGCAAAATATGGCTTGGAATTCCTTAGTGAAGATGATGGAAAGAGTGAACTCAACAAATTTCCTCGAACTGACTTCTTTGGTGATGATGATGACGATAAAGAAGATGATGACGATGAAGAATACGACGTGGAACAAGAAGAGAGGAAACCAGAGTGA

Coding sequence (CDS)

ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGACGAAATGGGGTTGTTACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGCATTAAGAAGCTCGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACAGTGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGTTGGCTTTTGGTGAAGCATCGTGACGCAAAATATGGCTTGGAATTCCTTAGTGAAGATGATGGAAAGAGTGAACTCAACAAATTTCCTCGAACTGACTTCTTTGGTGATGATGATGACGATAAAGAAGATGATGACGATGAAGAATACGACGTGGAACAAGAAGAGAGGAAACCAGAGTGA

Protein sequence

MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDDDEEYDVEQEERKPE

Homology

[Close]

BLAST of Spg021393 vs. NCBI nr
Match: XP_023539684.1 (uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 6.7e-67
Identity = 137/153 (89.54%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGK+ELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKNELNKFPR 120

Query: 121 TDFFGDDD----DDKEDDDDEEYDVEQEERKPE 150
            +  GDDD    DD +DDDDEEYDVEQEER  E
Sbjct: 121 FNMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

[Close]

BLAST of Spg021393 vs. NCBI nr
Match: KAG6596891.1 (hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030167.1 hypothetical protein SDJN02_08514 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.7 bits (670), Expect = 1.9e-66
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGK ELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKKELNKFPR 120

Query: 121 TDFFGDDDDDKEDD----DDEEYDVEQEERKPE 150
            +  GDDD D+EDD    DDEEYDVEQEER  E
Sbjct: 121 FNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE 153

[Close]

BLAST of Spg021393 vs. NCBI nr
Match: XP_022936695.1 (uncharacterized protein LOC111443208 [Cucurbita moschata])

HSP 1 Score: 261.9 bits (668), Expect = 3.3e-66
Identity = 136/153 (88.89%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+ELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 TDFFGDDD----DDKEDDDDEEYDVEQEERKPE 150
               GDDD    DD +DDDDEEYDVEQEER  E
Sbjct: 121 FKMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

[Close]

BLAST of Spg021393 vs. NCBI nr
Match: XP_023005590.1 (uncharacterized protein LOC111498530 [Cucurbita maxima])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 132/150 (88.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+ELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 TDFFGDDDDDKEDDDDEEYDVEQE-ERKPE 150
               GDDD D+EDDDD++ DVEQE ER+ E
Sbjct: 121 FSMIGDDDADEEDDDDDDDDVEQEGERREE 150

[Close]

BLAST of Spg021393 vs. NCBI nr
Match: XP_022143220.1 (uncharacterized protein LOC111013137 [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR+Y
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPNMNKELHYLNKEDR+LRWLLVKHRD KYGLEFLSEDD K EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPR 120

Query: 121 TDFFGDDDDDKEDDD---DEEYDVEQEERKPE 150
               GDDD D+EDDD   DEEYDVEQEE K E
Sbjct: 121 IGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE 152

[Close]

BLAST of Spg021393 vs. ExPASy TrEMBL
Match: A0A6J1FEF6 (uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC111443208 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 136/153 (88.89%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+ELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 TDFFGDDD----DDKEDDDDEEYDVEQEERKPE 150
               GDDD    DD +DDDDEEYDVEQEER  E
Sbjct: 121 FKMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

[Close]

BLAST of Spg021393 vs. ExPASy TrEMBL
Match: A0A6J1KXT7 (uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.1e-65
Identity = 132/150 (88.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+ELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 TDFFGDDDDDKEDDDDEEYDVEQE-ERKPE 150
               GDDD D+EDDDD++ DVEQE ER+ E
Sbjct: 121 FSMIGDDDADEEDDDDDDDDVEQEGERREE 150

[Close]

BLAST of Spg021393 vs. ExPASy TrEMBL
Match: A0A6J1CN79 (uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013137 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.8e-65
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR+Y
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPNMNKELHYLNKEDR+LRWLLVKHRD KYGLEFLSEDD K EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPR 120

Query: 121 TDFFGDDDDDKEDDD---DEEYDVEQEERKPE 150
               GDDD D+EDDD   DEEYDVEQEE K E
Sbjct: 121 IGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE 152

[Close]

BLAST of Spg021393 vs. ExPASy TrEMBL
Match: A0A7N2L1D1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 121/149 (81.21%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGRYY
Sbjct: 1   MPLYDCMLLLKPHVKKEALMELVARIGKHVYRRNGVLADMKSFGMVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPN+NKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK EL+KF R
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFTR 120

Query: 121 TDFFGDD--DDDKEDDDDEEYDVEQEERK 148
           +  + DD  D+D +DDDD+EYDV+QEE+K
Sbjct: 121 SSIYDDDDFDEDDDDDDDDEYDVDQEEKK 149

[Close]

BLAST of Spg021393 vs. ExPASy TrEMBL
Match: A0A2N9FW87 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19297 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 120/149 (80.54%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL+KPHVKKEAL+DLVAR+GKHV+RRNGV+TD+KSFG VQLGYGIKKLDGRYY
Sbjct: 1   MPLYDCMLLLKPHVKKEALMDLVARIGKHVYRRNGVLTDMKSFGNVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQMT+MATPN+N+ELHYLN EDRLLRWLLVKHR+ KYGLEFL+EDDGK EL+KF R
Sbjct: 61  QGQLMQMTMMATPNINEELHYLNDEDRLLRWLLVKHRNTKYGLEFLTEDDGKGELSKFTR 120

Query: 121 TDFFGDD--DDDKEDDDDEEYDVEQEERK 148
           +  + D+  D+D +DDDDEEYDV+QEERK
Sbjct: 121 SSIYDDEDIDEDDDDDDDEEYDVDQEERK 149

[Close]

BLAST of Spg021393 vs. TAIR 10
Match: AT3G18760.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-43
Identity = 85/135 (62.96%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR+Y
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
           QGQLMQ+T+M TPNMNKELHYLNKED+LLRWLLVKHRD K G     ++D  +  N+   
Sbjct: 61  QGQLMQITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIGQS--EKEDSLTVPNRLTS 120

Query: 121 TDFFGDDDDDKEDDD 136
              +     D++D++
Sbjct: 121 GSLYDGSSSDEDDNN 133

[Close]

BLAST of Spg021393 vs. TAIR 10
Match: AT3G18760.2 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR+Y
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELNKFPR 120
                Q+T+M TPNMNKELHYLNKED+LLRWLLVKHRD K G     ++D  +  N+   
Sbjct: 61  -----QITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIGQS--EKEDSLTVPNRLTS 120

Query: 121 TDFFGDDDDDKEDDD 136
              +     D++D++
Sbjct: 121 GSLYDGSSSDEDDNN 128

The following BLAST results are available for this feature:

BLAST of Spg021393 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539684.1	6.7e-67	89.54	uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]	[more]
KAG6596891.1	1.9e-66	89.54	hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936695.1	3.3e-66	88.89	uncharacterized protein LOC111443208 [Cucurbita moschata]	[more]
XP_023005590.1	1.1e-64	88.00	uncharacterized protein LOC111498530 [Cucurbita maxima]	[more]
XP_022143220.1	1.8e-64	88.16	uncharacterized protein LOC111013137 [Momordica charantia]	[more]

BLAST of Spg021393 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg021393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEF6	1.6e-66	88.89	uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1KXT7	5.1e-65	88.00	uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530...	[more]
A0A6J1CN79	8.8e-65	88.16	uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A7N2L1D1	2.0e-61	81.21	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2N9FW87	3.8e-60	80.54	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19297 PE=3 SV=1	[more]

BLAST of Spg021393 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18760.1	2.5e-43	62.96	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]
AT3G18760.2	1.4e-38	59.26	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 1..117 e-value: 2.1E-17 score: 64.9
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 4..95 e-value: 5.3E-16 score: 58.7
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 1..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..149
None	No IPR available	PANTHER	PTHR21011:SF14	SUBFAMILY NOT NAMED	coord: 1..143
None	No IPR available	CDD	cd15465	bS6_mito	coord: 3..96 e-value: 1.76083E-25 score: 91.0549
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021393.1	Spg021393.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome