Spg021278 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021278
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein TIC 214
Locationscaffold6: 48561907 .. 48564595 (-)
RNA-Seq ExpressionSpg021278
SyntenySpg021278
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAAACCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATATTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTAATTCTTATTACTTTTCAATATTCAATATGAAAAAAAAAAAAAAAAAATTCAAAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCCCACTTTTCTCTCTCACTTCACACCTTGGAACGCACCGTTCTTATAGAGAGAGGCGCTTTCACATCTTCTTAACCCGAAATGGCAAATGGCTGAGGAGAGGAAAGGTTCCTTTTTTTTATGGTTAGTCCTCCAAGATTGCAGCCTCTTCTCTATTTTTCGATGATAGGGTCCCAAAAAGATAATGATTTAGGATTACTGTTCAAGGGAATACCAAGATATGTATTCGACCAACCTCCCATTTTGCAGTTAAACATAGAGGCTATCGCCAGCTCTCAGAATCAGACTTTTGAGTATTAAGACCCAAAGCCTTCAAAGGTTTTAATCGTGGAGAAGAGATTGTGGATAGTCAAATCATCAAGTTTTCAATTACTCTTTTCGTTGATTGTCAATTGGCTTCTTTGCCCCTAGAATTAGAGCTTTCCAATTAGGTTTTTTTTCCTTCTTATCAATCATTTCACTGTGTGAGAATTCGAGTTTTGAGATGCAATTTTTCTTTTTGTAGGTTTGTCTTGTAATATTATTATTATTTTTTTAAAAATTTTGAACTCCCATAATAATTTCGACCGATGGCTCACTTTTCTTTAAGTGTAAAGAAAGGGGTGGTGGCCTTCCATTTTCACAGGAGGGTTTTCTCAATTATCTCAAAGATTTCTGTTCTTCATCTCCTTTTTGGGTTTTATTTGCCTCCAAGATCAAATTTATGATGGGTTTTTGCAGTAAGAGCTTTAATTTCGATTCTTTGGTTGGAGTGGTTTCTATGATTTTTAAGAGCAAGCATTCTCTTTGGTTAGTTTGCTTTGTTTCAGCTAGTCTTAAAGCTTCGTCAGGGTGTTGTTTATCTAAATTTGTTTTTGGTTTCCCTTTTGAAGGCATTTGTTTGATTTGGATTGTGTTTATAGTTTCTTTGTAATTTTGTTCTGTTTCTTCTTTCACTCCTTTTTGGAGTTTGTATCTTTTGAGCATCAGCCTTCATTTTTCCCGAAGTTCATTTCTTATTAACAATTTGTGAGGCCCCACCAAACAGCCATCGTTGGTTGCGTTGAGAAGGAGTGGCTGTTTGAGACAAGAGAAGGGGAAGAGAGAGGGTGGGGGCAGCCGGTGATCAAAAGGGATGGGAGATGGGGAGGGGTGGGAGATGGGGTGGGGTTGGGTAGAAGAGAGAGAGAATGGGGTAGGAGAGAGGGAATGGTTAAACATTTTGAATCTTAGAGATCAAATAGACACCAAAATGAGTATTTTTCTCGAAAAAATACAAAACTAAATGACCACGACGTTTGTTCTTATGTTAACACTCCTACTTTTGACCATCTTTGGAAAGCTTCTTCGGTCGGCCTCTTAAATAAAAAGGCATCTTCAACTGTGGGGGTTCCAACCAAAATTGGTCTTCTTAAGTTGCTTAGTAAGAGGCCAAGGAATATTTCTAAATCCCTTTTAAAACTCTATTCAACCTTGAGGTTCCAACCAAATTGATCATGTCTCCTATTCGACGAATTGGTGCAAGCATGGTTGGAGATCTATTTATAAGTAAAATATTCCAAGGTGTCCCAGCTCCATTGGCTAAGGTTTTGCAGTTTTTTAGTAATCCCTATATTGTGGTTGCTTGTTTGAATCTAACATCCTTAATTTCTCTAGAGTTTGGACATTGGGATGGGCAAATAAAAAAAAAAGGAATAAAAGTCTTTAGAGGACATGTTAGAAATATTGTAAGGATGCCAAAATAATTGAAGTTCAATTGCTAACTATTATGTTGCTTCGCAATTATGAAAATAAGTAGGATGCTATTTTATGTGCGTGAGTTTATTGATGAATTGAGTACTCAAATTTTGATGCATTTTCTCTTTTTTTGTTGCTCACTGAACAGGAAACGATCGCAACGTCGGCACGTCTAGTGATGCTAAGTTTATTTCTAAATCTTTGCCAGTTAGGGTTTCTGTTATTAAGAAACCAGAATTTATTGCTCGGGTGGAGAATAAACCAAGGTTGGAAGTTCAAAGCAATGATACGAACACTGGACTTGAGTCATTGTGCCAATACTACGATAGTGATGAGGATTGATATATTATATTATGTTGGTTTGGGTCGCGTTCTATCTTTATGATTTAATCGTGTATACTATATATAACTTGTTAATAATGGCTTGCTTCGTTTTGTATTGGAAAGCAATATTCTTTTGCAACGGTTTTATTTCATCTCTGAAAAACCTGTGTGATTGGTTGGTTGCTCTTCAATTCATGCTTTTGCCAATTAAAGAGGTATCCTTATTATCCACTCTGTGGATTGTTGATGAGCATTTTGTCCATGAAATATAGCATTAAAATTGTTAGTGTGGAAACTTTTGAGCTTTAGAAAAGG

mRNA sequence

ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAAACCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATATTGTAGGGGAGCTAGTCTTAAAGCTTCGAAACGATCGCAACGTCGGCACGTCTAGTGATGCTAAGTTTATTTCTAAATCTTTGCCAGTTAGGGTTTCTGTTATTAAGAAACCAGAATTTATTGCTCGGGTGGAGAATAAACCAAGGTTGGAAGTTCAAAGCAATGATACGAACACTGGACTTGAGTCATTGTGCCAATACTACGATAGTGATGAGGATTGA

Coding sequence (CDS)

ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAAACCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATATTGTAGGGGAGCTAGTCTTAAAGCTTCGAAACGATCGCAACGTCGGCACGTCTAGTGATGCTAAGTTTATTTCTAAATCTTTGCCAGTTAGGGTTTCTGTTATTAAGAAACCAGAATTTATTGCTCGGGTGGAGAATAAACCAAGGTTGGAAGTTCAAAGCAATGATACGAACACTGGACTTGAGTCATTGTGCCAATACTACGATAGTGATGAGGATTGA

Protein sequence

MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGDDIVGELVLKLRNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKPRLEVQSNDTNTGLESLCQYYDSDED
Homology
[Close]
BLAST of Spg021278 vs. NCBI nr
Match: PQP98134.1 (hypothetical protein Pyn_20557 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGD 60
          MEG+RPLVSPPVKN+GLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQ+IPNLVVKLYCGD
Sbjct: 1  MEGRRPLVSPPVKNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60

Query: 61 DIVGELVLK 70
          D VGE++ K
Sbjct: 61 DTVGEVLRK 69

[Close]
BLAST of Spg021278 vs. NCBI nr
Match: TYK00176.1 (hypothetical protein E5676_scaffold1452G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGD 60
          MEGQR LVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQ+IPNLVVKLYC D
Sbjct: 17 MEGQRHLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCSD 76

Query: 61 DIVGELVLK 70
          D VGE++ K
Sbjct: 77 DTVGEVLRK 85

[Close]
BLAST of Spg021278 vs. NCBI nr
Match: KAG1362574.1 (hypothetical protein COCNU_10G007930 [Cocos nucifera])

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-27
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGD 60
          MEGQRPLVS PVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQ+I NLVVKLYCGD
Sbjct: 1  MEGQRPLVSLPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSISNLVVKLYCGD 60

Query: 61 DIVGELVLK 70
          D VGE++ K
Sbjct: 61 DTVGEVLRK 69

[Close]
BLAST of Spg021278 vs. NCBI nr
Match: PHU10897.1 (hypothetical protein BC332_17827 [Capsicum chinense])

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-26
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGD 60
          MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYS VLGVEEPHQ+IPNLVVKLYCGD
Sbjct: 16 MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSSVLGVEEPHQSIPNLVVKLYCGD 75

Query: 61 D 62
          D
Sbjct: 76 D 76

[Close]
BLAST of Spg021278 vs. NCBI nr
Match: RZC75017.1 (hypothetical protein C5167_050499 [Papaver somniferum])

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-26
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQ---YAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLY 60
          MEGQRPLVSPPVKNWGLTITSQ   YAF+SCL SFMVRYSGVLGVEEPHQ+IPNLVVKLY
Sbjct: 1  MEGQRPLVSPPVKNWGLTITSQYNKYAFISCLYSFMVRYSGVLGVEEPHQSIPNLVVKLY 60

Query: 61 CGDDIVGE 66
          CGDD VGE
Sbjct: 61 CGDDTVGE 68

[Close]
BLAST of Spg021278 vs. ExPASy TrEMBL
Match: A0A314XT24 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_20557 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.9e-28
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGD 60
          MEG+RPLVSPPVKN+GLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQ+IPNLVVKLYCGD
Sbjct: 1  MEGRRPLVSPPVKNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60

Query: 61 DIVGELVLK 70
          D VGE++ K
Sbjct: 61 DTVGEVLRK 69

[Close]
BLAST of Spg021278 vs. ExPASy TrEMBL
Match: A0A5D3BPI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1452G00010 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.7e-28
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGD 60
          MEGQR LVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQ+IPNLVVKLYC D
Sbjct: 17 MEGQRHLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCSD 76

Query: 61 DIVGELVLK 70
          D VGE++ K
Sbjct: 77 DTVGEVLRK 85

[Close]
BLAST of Spg021278 vs. ExPASy TrEMBL
Match: A0A6N2NAY5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1   MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGD 60
           MEGQRPLVSP VKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQ+IPNLVVKLYCG+
Sbjct: 489 MEGQRPLVSPTVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGE 548

Query: 61  DIVGE 66
           D VGE
Sbjct: 549 DTVGE 553

[Close]
BLAST of Spg021278 vs. ExPASy TrEMBL
Match: A0A2G3BWN2 (Protein TIC 214 OS=Capsicum chinense OX=80379 GN=BC332_17827 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLYCGD 60
          MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYS VLGVEEPHQ+IPNLVVKLYCGD
Sbjct: 16 MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSSVLGVEEPHQSIPNLVVKLYCGD 75

Query: 61 D 62
          D
Sbjct: 76 D 76

[Close]
BLAST of Spg021278 vs. ExPASy TrEMBL
Match: A0A4Y7KQA8 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_050499 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  MEGQRPLVSPPVKNWGLTITSQ---YAFLSCLSSFMVRYSGVLGVEEPHQTIPNLVVKLY 60
          MEGQRPLVSPPVKNWGLTITSQ   YAF+SCL SFMVRYSGVLGVEEPHQ+IPNLVVKLY
Sbjct: 1  MEGQRPLVSPPVKNWGLTITSQYNKYAFISCLYSFMVRYSGVLGVEEPHQSIPNLVVKLY 60

Query: 61 CGDDIVGE 66
          CGDD VGE
Sbjct: 61 CGDDTVGE 68

The following BLAST results are available for this feature:
BLAST of Spg021278 vs. NCBI nr
Match NameE-valueIdentityDescription
PQP98134.11.2e-2789.86hypothetical protein Pyn_20557 [Prunus yedoensis var. nudiflora][more]
TYK00176.11.6e-2789.86hypothetical protein E5676_scaffold1452G00010 [Cucumis melo var. makuwa][more]
KAG1362574.13.5e-2789.86hypothetical protein COCNU_10G007930 [Cocos nucifera][more]
PHU10897.13.0e-2696.72hypothetical protein BC332_17827 [Capsicum chinense][more]
RZC75017.13.9e-2689.71hypothetical protein C5167_050499 [Papaver somniferum][more]
BLAST of Spg021278 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021278 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A314XT245.9e-2889.86Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_205... [more]
A0A5D3BPI77.7e-2889.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6N2NAY51.3e-2793.85Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=... [more]
A0A2G3BWN21.5e-2696.72Protein TIC 214 OS=Capsicum chinense OX=80379 GN=BC332_17827 PE=3 SV=1[more]
A0A4Y7KQA81.9e-2689.71Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_050499 PE=4 SV=1[more]
BLAST of Spg021278 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021278.1Spg021278.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane