Spg021263 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021263
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ELL-associated factor 1-like
Location	scaffold6: 47517481 .. 47518446 (+)
RNA-Seq Expression	Spg021263
Synteny	Spg021263

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAAGAAATCGCCATTGGTATTTCGCCTGAAGAAGCCAGTGATGAAACTCAAACTCACTGCATTTCTCCGCCTCTGCCTCCCTCGCCGGCGACATTCCCGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACAGAGTTTCTTGGAAGATGAGAGAATTGTCGAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCGAGTTCAAGCTATGGAGCTTTCGAAGACGATGTCGATAAGCGATCTCAGATTTTCATCGATAATTTCCGCCGCCAGTTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTACTATAGAATTAATAGCTCTGAAACGGAGTATGATGAGAGATCGCCGCCGTGTTCGTCGATTCGATGAACGAATTTCTTCTTGAAATCGAAGTGTGAATTGTTGTGTTCTTGAGTACTGTAATGAAGTTAGGATGATTCAGTTGAAGAGATTGTATATTTCTGGAAAATTGATTCGTTGTTTGTTTTTCCTTCTCGTGGAAGTTTTCTATCAATTCATCGCTTCAGAAGATTGCTGTGTTTCCAGATTTGTATTTGTTTTAGGAAATTGTTGCTGTGCAGAATGGATATTTGTCTTTATAATTCATATCATCTGAAACTAATGCCAAAGTCTTGATGGATTGAGTTGTTGTGTTTAATTTGGATTATTATTGGCAGTTTTTTTTTTTTTTTTTCCGACAACCTACCTCAAAAATATATAATTGTTCTCACTTGTATACTCACGATCATTATCTTTCCTAGCCAACGTGGGACCATGTCGTATGTTATACTTTCGAAACTATTAATTAAGCGGGAGCGCAACGACGAAGTATTAGTTAGGGTTGATCCAGACACTTGGGACCCGGTGGATGAAAACTTGGCTGGCGATCGAGTCTGTCGTCTCCACGGCTCTCCCTTTTGCGGGCCCTTCACATACTAG

mRNA sequence

ATGGCAGAGAAGAAATCGCCATTGGTATTTCGCCTGAAGAAGCCAGTGATGAAACTCAAACTCACTGCATTTCTCCGCCTCTGCCTCCCTCGCCGGCGACATTCCCGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACAGAGTTTCTTGGAAGATGAGAGAATTGTCGAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCGAGTTCAAGCTATGGAGCTTTCGAAGACGATGTCGATAAGCGATCTCAGATTTTCATCGATAATTTCCGCCGCCAGTTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGCCAACGTGGGACCATGTCGTATGTTATACTTTCGAAACTATTAATTAAGCGGGAGCGCAACGACGAAGTATTAGTTAGGGTTGATCCAGACACTTGGGACCCGGTGGATGAAAACTTGGCTGGCGATCGAGTCTGTCGTCTCCACGGCTCTCCCTTTTGCGGGCCCTTCACATACTAG

Coding sequence (CDS)

ATGGCAGAGAAGAAATCGCCATTGGTATTTCGCCTGAAGAAGCCAGTGATGAAACTCAAACTCACTGCATTTCTCCGCCTCTGCCTCCCTCGCCGGCGACATTCCCGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACAGAGTTTCTTGGAAGATGAGAGAATTGTCGAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCGAGTTCAAGCTATGGAGCTTTCGAAGACGATGTCGATAAGCGATCTCAGATTTTCATCGATAATTTCCGCCGCCAGTTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGCCAACGTGGGACCATGTCGTATGTTATACTTTCGAAACTATTAATTAAGCGGGAGCGCAACGACGAAGTATTAGTTAGGGTTGATCCAGACACTTGGGACCCGGTGGATGAAAACTTGGCTGGCGATCGAGTCTGTCGTCTCCACGGCTCTCCCTTTTGCGGGCCCTTCACATACTAG

Protein sequence

MAEKKSPLVFRLKKPVMKLKLTAFLRLCLPRRRHSRRLRSFGSDDRTVGLQSFLEDERIVENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQLSQRGTMSYVILSKLLIKRERNDEVLVRVDPDTWDPVDENLAGDRVCRLHGSPFCGPFTY

Homology

[Close]

BLAST of Spg021263 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.0 bits (406), Expect = 8.9e-36
Identity = 89/108 (82.41%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLKLTAFLRLCLPRRRHSRRLRSFGSDDRTVGLQSFLEDERIV 60
           MA+KKSPL+FRLKK    +KLTAFLRLC+ RR++SRRLRSFGSDDRT GL+SFLEDERIV
Sbjct: 1   MAQKKSPLLFRLKKSA--IKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIV 60

Query: 61  ENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQL 109
           EN SVRKLERASS+SY  FEDDVDKRSQIFID F RQLRLERQISLQL
Sbjct: 61  ENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQL 106

[Close]

BLAST of Spg021263 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-29
Identity = 83/112 (74.11%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLKLTAFLR----LCLPRRRHSRRLRSFGSDDRTVGLQSFLED 60
           MAEKKSPL+ RLKK V   K+TA LR    LCL RRR S RLRSF   DRTVGL+SFLED
Sbjct: 1   MAEKKSPLMPRLKKAVR--KITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLED 60

Query: 61  ERIVENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQL 109
           E I ENCS+R+LERASS  YG  EDDVDKRSQIFIDNF R+LRLERQISLQL
Sbjct: 61  EEIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQL 110

[Close]

BLAST of Spg021263 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 5.8e-27
Identity = 76/117 (64.96%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLKLTAFLRLCLPRRRHSRRLRSFGSDDRTVGLQSFLEDE-RI 60
           MAEKKSP+  RLKK +  +KLTA +RLCL  RR S+RL SF SDDR VG++  LED+ RI
Sbjct: 1   MAEKKSPMASRLKKAL--IKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRI 60

Query: 61  VENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQLSQRGTMSY 117
            EN   RKLERASSS YG +E+DVD+R++IFI+NFRRQLRLERQISLQL      SY
Sbjct: 61  AENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSY 115

[Close]

BLAST of Spg021263 vs. NCBI nr
Match: KAE8650012.1 (hypothetical protein Csa_009473 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-26
Identity = 77/115 (66.96%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLKLTAFLRLCLPRRRHSRRLRSFGS-DDRTVGLQSFLEDE-R 60
           MAEKKSP+  RL+K +MKLK  A LRLCL  R+ SRRL SF S DD+ VG++  LED+ R
Sbjct: 1   MAEKKSPMASRLQKALMKLK--AVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 61  IVENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQLSQRGT 114
           I E+  VRKLERASSS YG +E+DVD+R++IFI+NFRRQLRLERQISLQLS R T
Sbjct: 61  IAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLSLRST 113

[Close]

BLAST of Spg021263 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 74/115 (64.35%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLKLTAFLRLCLPRRRHSRRLRSFGSDDRTVGLQSFLEDERIV 60
           MAE  +P+V R+KK +   KLTAF+RLC   R  SRR+RSF SD RT GL+S L DE IV
Sbjct: 1   MAENATPVVLRMKKAL--TKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIV 60

Query: 61  ENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQLSQRGTMS 116
           E CSVRKLER  SS  G+ EDDVD+R+QIFIDNFRRQL LERQISL+L   G  S
Sbjct: 61  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINS 113

[Close]

BLAST of Spg021263 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 83/112 (74.11%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLKLTAFLR----LCLPRRRHSRRLRSFGSDDRTVGLQSFLED 60
           MAEKKSPL+ RLKK V   K+TA LR    LCL RRR S RLRSF   DRTVGL+SFLED
Sbjct: 1   MAEKKSPLMPRLKKAVR--KITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLED 60

Query: 61  ERIVENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQL 109
           E I ENCS+R+LERASS  YG  EDDVDKRSQIFIDNF R+LRLERQISLQL
Sbjct: 61  EEIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQL 110

[Close]

BLAST of Spg021263 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.8e-27
Identity = 76/117 (64.96%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLKLTAFLRLCLPRRRHSRRLRSFGSDDRTVGLQSFLEDE-RI 60
           MAEKKSP+  RLKK +  +KLTA +RLCL  RR S+RL SF SDDR VG++  LED+ RI
Sbjct: 1   MAEKKSPMASRLKKAL--IKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRI 60

Query: 61  VENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQLSQRGTMSY 117
            EN   RKLERASSS YG +E+DVD+R++IFI+NFRRQLRLERQISLQL      SY
Sbjct: 61  AENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSY 115

[Close]

BLAST of Spg021263 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.6e-25
Identity = 76/118 (64.41%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLKLTAFLRLCLPRRRHSRRLRSFGS-DDRTVGLQSFLEDE-R 60
           MAEKKSP+  RL+K +MKLK  A LRLCL  R+ SRRL SF S DD+ VG++  LED+ R
Sbjct: 1   MAEKKSPMASRLQKALMKLK--AVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 61  IVENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQLSQRGTMSY 117
           I E+  VRKLERASSS YG +E+DVD+R++IFI+NFRRQLRLERQISLQL      SY
Sbjct: 61  IAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSY 116

[Close]

BLAST of Spg021263 vs. ExPASy TrEMBL
Match: A0A1R3J730 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 56/122 (45.90%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLK------LTAFLRLCLPRRRHSRRLRSFGSDDRTVGLQSFL 60
           M  +   ++ R KK V KL       LT +   C  RR   R   +   +DR +GL SFL
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDR-LGLHSFL 60

Query: 61  EDERIVENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQLSQRGTM 117
           EDE      SVR L+R    SYGA +DDVDKR++IFI NFRRQL LERQ+SL+L    T 
Sbjct: 61  EDEETNGRSSVRALQRV--RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTT 119

[Close]

BLAST of Spg021263 vs. ExPASy TrEMBL
Match: A0A1R3IU67 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-11
Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 1   MAEKKSPLVFRLKKPVMKLK------LTAFLRLCLPRRRHSRRLRSFGSDDRTVGLQSFL 60
           M  +   ++ R KK V KL       LT +   C  RR   +   +   +DR +GL SFL
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGKWRPTLSFNDR-LGLHSFL 60

Query: 61  EDERIVENCSVRKLERASSSSYGAFEDDVDKRSQIFIDNFRRQLRLERQISLQLSQRGTM 117
           EDE      SVR L+R    SYGA +DDVDKR++IFI NFRRQL LERQ+SL+L    T 
Sbjct: 61  EDEETNGTSSVRALQRV--RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTR 119

The following BLAST results are available for this feature:

BLAST of Spg021263 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596691.1	8.9e-36	82.41	hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145292.1	2.8e-29	74.11	uncharacterized protein LOC111014780 [Momordica charantia]	[more]
KAA0052985.1	5.8e-27	64.96	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]
KAE8650012.1	4.9e-26	66.96	hypothetical protein Csa_009473 [Cucumis sativus]	[more]
KAG7015798.1	1.1e-25	64.35	hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Spg021263 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg021263 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CW64	1.3e-29	74.11	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A5D3CHZ5	2.8e-27	64.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L4Z8	2.6e-25	64.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A1R3J730	2.2e-11	45.90	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1	[more]
A0A1R3IU67	4.8e-11	45.08	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 ...	[more]

BLAST of Spg021263 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 80..107 e-value: 1.2E-6 score: 28.0
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 6..109
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 6..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021263.1	Spg021263.1	mRNA