Spg021011 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021011
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposase
Locationscaffold9: 4167963 .. 4171716 (-)
RNA-Seq ExpressionSpg021011
SyntenySpg021011
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAGCTCACTCAAATAAGGATAGAGGTGGATCACAAAGTAATTGAATACAATGCACTTGGACAATGGATTGGTAAGAATGCAACAAAAATGGTAAGTTATATTGAAACTATAGTGTGAAGCCACGTCTAGATCACATATAGCTCTTAGACTCAAGTACCAAGAGAGTTGAGGTAATATGTGTTGATTCGCTATGTAGTTAAATATATTATGTTATTAATTTGATTTACTATACTTACATATTAACTTGTGTTTGTTAGACTTCTTTTGTTACAAATCCCAAATTAAAAAAAAAAAAACTGAATAAAGCTTGCATCGCTTTCTATCAGTTTACGAACATTCTGAGGACAAAGCATATTATACCATTTCAAAACTCTCTAGTCTGTTTGACATTCCCACCACTATCATGTTCAAACATCGATCAAGCTCATTGGGAAGCTTTCGTGAGTAATGTTTTATCGAAAAATTTTCAAGTATTAAAAGTTGATATATTTTTTATGGTATGTTTGGATTATTATTATTGTAATTGATTTGATTTGTATAACTCTTATATGACATAGAAATTTAGCAACATGTAGAAGAATAGACGTTTAAAGCACAGTATAACCATATACTTGTTCGTAAGGGATATGCAAACTTGGTAGAAGAATTGGTATTTTTTTTTTTTTTAATTTTATGAAGTTATCAAGTCAATGTAAATTTTTTGTTATTTCTTGTTTATATTCTTATATTTGAATAATTTAATTTTTGTAGAATAAGGAAGAAAAAATATCTGAAAATGTGGATCGGTCCATTGTCTGGATCCACGCCCGAAAAGGAAAAACTAGCAAATTCTTAAGCAAAGATAATGAGGATGCTACTACAAAAATCGTAAGTAACTGTATTTATTATTTACATTTTACTATGATATATTTTCCTTGAGAAATCATTTTTTTATCGTTTTCAAATTATAGGATGAGCTATTAAAAGATGCAAAGTGTCAAATTGTTAGTTCATGACATTTTGAAAAGTTTTGGGTACTTCTAAACACTCAGGACGAGTAAGAGGCATTGGTTGATTAATTGTACCTTCCTACTTTCACAAGTTCAGTTCATTAATTCCCAAGAATGTTGCAGTAGAGGATGAACCAGAATGTTGAAAGAAGAAAAAAGCAAAACTCTAGAGACAATACAATGAAATAGAGAAGCACATGAGTGAAATGCAATCTCAAATGGAGAGTGGTAGACGAACACCAAAGTCAGATCGAGGTAGTTGCCAACAAGTACCAGACGTTCAGCCTTTTGATGAAAAACCTGACCAGATAACAATATTGAAATTATATTAAAATGTATTTTATGACAATACTTGATATATAATATTAAATGAAAGTTCTAATATATAATTTGAATTTTAGTGAAGATCATGTAAACTTGCTGCTTGAAATGTAAAGAATATTGTGGCAGCAGGAATTGTATTTAAGAGAAAACAACCATGAAGTTGTTCGTGTAAACTTTGATTAATACTCGCACACAGTTTATTGTAGTTTATTGTGAGTGGGATCCCATAAACAACTTCATGGTCGTTTTTTTTCTTAAATACAATTCCTGCGGCCACAATATTCTTTACATTTTCAACCGCAAGTTTACATGATATTCCCTAAAATTCAAATTATATATTATAATTTTCATTTAACATTATAAAATACATTTCAATATAATTCGAATATTGTTACCTGATCAGGTTTTTCATCAAAAGGTTGAGGGTCTGGTACTTGTTGGCAACTACCTCGATCTGACATTGGTGTTTGTCTACCAATCTCCATTTGAGATTGCATTTCACGCATGCGCTTCTCCATTTCATTGTATTGTCTCTAGAGTTGTGTCTTCTTTCTTCCAATTTGCTAGTTCATCCTCCACGGCAACATTCTTGGAAATTGATGAAATGGTCAGAAAGGTACAATTAATCCACCAATACCTCTTAATCGTCCTGAGTATTCAGGAGTACCCAAAACTTGTGTCAAAATGTCATCTGAACTAACAATTTGACACTGCATTTTTTGATAGTTCATCCTATAATTTGAAAACAATAAAAATGATTTCTCAAGAAAAATATATCATAGTAAAATGTAAATAATAAATACAATTACTTACGATTTTTGCAGTAACATCATCATTATCTTTGTTTAAGAATTCGCCAATTTTCCTTTTCAGGCATGGATCCAAAGAATGGGTCGATCCACATTTTCAGATATTTTTACTTATTCTATAAAAATTAAATTATTCAAACATAAGAATATAAACATGAAATAACAAAAATTTTATATTAACTTTCATAACTTCATAAAATTAATTAAAAAAAAAAAAAAAAACATACCAACTATTCTACCAAGATTGCATATCCCTTACAGGCAAGTCTATGGTTATACTTGTGCTTTAAACGTCTATTCTTCCACATGTTAAATTCTTACATCATATAAGAGTTACACAAATCAAATCAATTAGAATAATAATCATCCAAACATACCATTGAAAATATATCAACTTTTAATACTTACTTGAAAACCTTTCGATAAAACATTACTCAAGAAAGAATTCCAATGAGCTTGGTCGATGTGTGAATATGATGGTAGTGAGAATACCGAAGTGAGAATACCAAACAGACTATAAAGTCTTGAAATGGTATAATATAATCCTCATAATGTTCTTAAACTGACGGAAAGTGATGTCAGTTTTCTTAAATGTCTTTTTTTATTTGGGATTTGTAACAAAAAAAAATCTAACAAACACAAATTAATATGCAAGTATAGTAAATCAAACTAATAACATAATATATTTAACTACATAGCGAATCTACACATATTACCTCAATGCATGAGTAAATTTTATCCTTCAACTCTCTTGGTACTTGAGTCCAAGAGTTATATGTGATCTGGACGTGGCATCTCACTATAGTTTCAATATAACTTACCATTTTTGTTACATTCTTACCAATCCATTAACCAAGTGCAAGTGGGTTGGGTCAGTTCGGCTCGGTTACTGTGCAAAACCAAAGACGAACTGACCATTCGATGAAAGAAACATTGAAAACCACCACCGAACTGAGTTTACATTAAAACTGCATCAAACCAATGGTTCGGTTCGGTTCAATAAATGGCGAACCGCTTAGTTGAAGCACGAATTTGGGCTGGGCTCGCGAGTCGGGTCTAGGGGCGTGGGTCTGCGTGCATTCGGCCTGCATGCATTCGGGCCGCATGCATTATATATATGTATATCAAAAATTATTTAGCTTCCAATGGTTCGGTTCGGTTCCATAAATGGCGAACCGCTTAGTTGAAGCACGGATTTGGGCTGGGCTCGCGGGTCGGGTCTGGGGACGTGGGTCTGCGTGCATTCGGGTCGCATGCATGTTATATATGTATATCAAAAATTATTTAGCTTCCGCCAGCATTCGAACCTGCGCCCCCACTTATACCAGGAAAGTATTTTAACCGTTGAGCCATTTAAGATGTTTGATTATAGAATTGGTAGATATTATATATATTAAACGGTCGACTCGGTCTATACCGGTTCAACCATTCAAAACTCGAAACCGACCAAATTCAACCAGTTTTCATTATATTCAAGCCAAAACCACCAAGCCGAACCGTTCTAAACCCGAATTATCAATTTTTCGGTCGATTTTTGCAGTTTTATCGGTTTGTCAATTTTCCCTTGCACCCCTAGTATTCCTGCTCCACATCCCCTTATTTTAGGTTTCTGTAGCACCTGCCTGA

mRNA sequence

ATGATTGAGCTCACTCAAATAAGGATAGAGGTGGATCACAAAGTAATTGAATACAATGCACTTGGACAATGGATTGGTAAGAATGCAACAAAAATGACGTTTAAAGCACAGTATAACCATATACTTGTTCGTAAGGGATATGCAAACTTGGTAGAAGAATTGAATAAGGAAGAAAAAATATCTGAAAATGTGGATCGGTCCATTGTCTGGATCCACGCCCGAAAAGGAAAAACTAGCAAATTCTTAAGCAAAGATAATGAGGATGCTACTACAAAAATCGTTTTTCATCAAAAGGTTGAGGGTCTGGTACTTGTTGGCAACTACCTCGATCTGACATTGGTGTTTGTCTACCAATCTCCATTTGAGATTGCATTTCACGCATGCGCTTCTCCATTTCATTGTATTGTCTCTAGAGTTGTGTCTTCTTTCTTCCAATTTGCTAGTTCATCCTCCACGGCAACATTCTTGGAAATTGATGAAATGGTCAGAAAGGTTTCTGTAGCACCTGCCTGA

Coding sequence (CDS)

ATGATTGAGCTCACTCAAATAAGGATAGAGGTGGATCACAAAGTAATTGAATACAATGCACTTGGACAATGGATTGGTAAGAATGCAACAAAAATGACGTTTAAAGCACAGTATAACCATATACTTGTTCGTAAGGGATATGCAAACTTGGTAGAAGAATTGAATAAGGAAGAAAAAATATCTGAAAATGTGGATCGGTCCATTGTCTGGATCCACGCCCGAAAAGGAAAAACTAGCAAATTCTTAAGCAAAGATAATGAGGATGCTACTACAAAAATCGTTTTTCATCAAAAGGTTGAGGGTCTGGTACTTGTTGGCAACTACCTCGATCTGACATTGGTGTTTGTCTACCAATCTCCATTTGAGATTGCATTTCACGCATGCGCTTCTCCATTTCATTGTATTGTCTCTAGAGTTGTGTCTTCTTTCTTCCAATTTGCTAGTTCATCCTCCACGGCAACATTCTTGGAAATTGATGAAATGGTCAGAAAGGTTTCTGTAGCACCTGCCTGA

Protein sequence

MIELTQIRIEVDHKVIEYNALGQWIGKNATKMTFKAQYNHILVRKGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKIVFHQKVEGLVLVGNYLDLTLVFVYQSPFEIAFHACASPFHCIVSRVVSSFFQFASSSSTATFLEIDEMVRKVSVAPA
Homology
[Close]
BLAST of Spg021011 vs. NCBI nr
Match: KAA0040896.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 0 

Query: 1   MIELTQIRIEVDHKVIEYNALGQWIGKNATKM---------TFKAQYNHILVRKGYANLV 60
           MI LTQI  + +  V++YN  G+WIG+N T+M             +YNH   RKGYANL 
Sbjct: 487 MIHLTQISSDANRLVVDYNERGEWIGENVTQMKRSNMQKERRKNYKYNHRTSRKGYANLE 546

Query: 61  EELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKIVFHQK 99
           EEL +  K+  + DR+ +W HAR GK  +F++K+ E+   KI   QK
Sbjct: 547 EELVR--KLPPSADRATLWKHARVGKDGEFMNKEVEEIVGKIDKLQK 591

[Close]
BLAST of Spg021011 vs. NCBI nr
Match: KAA0045361.1 (uncharacterized protein E6C27_scaffold316G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-07
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 1   MIELTQIRIEVDHKVIEYNALGQWIGKNATKM------TFKAQ----------YNHILVR 60
           M E+T+ R EV   VIEYN LGQ IG++A K+      T K++          YNH   R
Sbjct: 1   MKEITRARSEVQRLVIEYNELGQPIGQSAMKLKSFIGTTKKSENGKEKRKQHKYNHRTSR 60

Query: 61  KGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKI 94
           KGYANL+EEL      S+ +DRSIVW  AR  +  +   ++ ++    I
Sbjct: 61  KGYANLMEELKASS--SDQIDRSIVWKQARMDQKGQIPDEEMKEMVNLI 107

[Close]
BLAST of Spg021011 vs. NCBI nr
Match: KAA0051220.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-07
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 37 QYNHILVRKGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKIVFH 96
          +YNH   RKGYANL EEL KE K+  +VDR+ +W HAR GK  +F++K+ E+   KI   
Sbjct: 20 KYNHRTSRKGYANLGEELKKEGKLPPSVDRATLWKHARVGKDGEFMNKEVEEIVAKIDKL 79

Query: 97 QK 99
          QK
Sbjct: 80 QK 81

[Close]
BLAST of Spg021011 vs. NCBI nr
Match: TYK01573.1 (uncharacterized protein E5676_scaffold451G001530 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 37 QYNHILVRKGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKI 94
          +YNH   RKGYANL EEL KE K+  ++DR+ +W HAR GK  +F++K+ E+   KI
Sbjct: 10 KYNHKTSRKGYANLGEELKKEGKLPPSIDRATLWKHARVGKDEEFMNKEVEEIVRKI 66

[Close]
BLAST of Spg021011 vs. NCBI nr
Match: TYK02613.1 (uncharacterized protein E5676_scaffold280G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-06
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 37 QYNHILVRKGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKIV 95
          +YNH    KGYANL E+L KEEK+  +VD++ +W HAR GK  +F++K+ E+   KIV
Sbjct: 20 KYNHRTSHKGYANLGEDLKKEEKLPPSVDQATLWKHARVGKDGEFMNKEVEEIAGKIV 77

[Close]
BLAST of Spg021011 vs. ExPASy TrEMBL
Match: A0A5A7TFT2 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G00050 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.5e-12
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 0 

Query: 1   MIELTQIRIEVDHKVIEYNALGQWIGKNATKM---------TFKAQYNHILVRKGYANLV 60
           MI LTQI  + +  V++YN  G+WIG+N T+M             +YNH   RKGYANL 
Sbjct: 487 MIHLTQISSDANRLVVDYNERGEWIGENVTQMKRSNMQKERRKNYKYNHRTSRKGYANLE 546

Query: 61  EELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKIVFHQK 99
           EEL +  K+  + DR+ +W HAR GK  +F++K+ E+   KI   QK
Sbjct: 547 EELVR--KLPPSADRATLWKHARVGKDGEFMNKEVEEIVGKIDKLQK 591

[Close]
BLAST of Spg021011 vs. ExPASy TrEMBL
Match: A0A5A7TV19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001400 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-07
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 1   MIELTQIRIEVDHKVIEYNALGQWIGKNATKM------TFKAQ----------YNHILVR 60
           M E+T+ R EV   VIEYN LGQ IG++A K+      T K++          YNH   R
Sbjct: 1   MKEITRARSEVQRLVIEYNELGQPIGQSAMKLKSFIGTTKKSENGKEKRKQHKYNHRTSR 60

Query: 61  KGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKI 94
           KGYANL+EEL      S+ +DRSIVW  AR  +  +   ++ ++    I
Sbjct: 61  KGYANLMEELKASS--SDQIDRSIVWKQARMDQKGQIPDEEMKEMVNLI 107

[Close]
BLAST of Spg021011 vs. ExPASy TrEMBL
Match: A0A5A7U7P3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00230 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-07
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 37 QYNHILVRKGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKIVFH 96
          +YNH   RKGYANL EEL KE K+  +VDR+ +W HAR GK  +F++K+ E+   KI   
Sbjct: 20 KYNHRTSRKGYANLGEELKKEGKLPPSVDRATLWKHARVGKDGEFMNKEVEEIVAKIDKL 79

Query: 97 QK 99
          QK
Sbjct: 80 QK 81

[Close]
BLAST of Spg021011 vs. ExPASy TrEMBL
Match: A0A5D3BPE5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001530 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.3e-07
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 37 QYNHILVRKGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKI 94
          +YNH   RKGYANL EEL KE K+  ++DR+ +W HAR GK  +F++K+ E+   KI
Sbjct: 10 KYNHKTSRKGYANLGEELKKEGKLPPSIDRATLWKHARVGKDEEFMNKEVEEIVRKI 66

[Close]
BLAST of Spg021011 vs. ExPASy TrEMBL
Match: A0A5D3BSF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00180 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.5e-07
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 37 QYNHILVRKGYANLVEELNKEEKISENVDRSIVWIHARKGKTSKFLSKDNEDATTKIV 95
          +YNH    KGYANL E+L KEEK+  +VD++ +W HAR GK  +F++K+ E+   KIV
Sbjct: 20 KYNHRTSHKGYANLGEDLKKEEKLPPSVDQATLWKHARVGKDGEFMNKEVEEIAGKIV 77

The following BLAST results are available for this feature:
BLAST of Spg021011 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040896.11.6e-1142.06transposase [Cucumis melo var. makuwa][more]
KAA0045361.15.2e-0739.45uncharacterized protein E6C27_scaffold316G001400 [Cucumis melo var. makuwa][more]
KAA0051220.16.8e-0751.61transposase [Cucumis melo var. makuwa][more]
TYK01573.11.5e-0650.88uncharacterized protein E5676_scaffold451G001530 [Cucumis melo var. makuwa][more]
TYK02613.12.0e-0650.00uncharacterized protein E5676_scaffold280G00180 [Cucumis melo var. makuwa][more]
BLAST of Spg021011 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021011 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TFT27.5e-1242.06Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G00050 PE... [more]
A0A5A7TV192.5e-0739.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U7P33.3e-0751.61Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00230 P... [more]
A0A5D3BPE57.3e-0750.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BSF69.5e-0750.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg021011 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021011.1Spg021011.1mRNA