Spg020940 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020940
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	WD repeat-containing protein 43
Location	scaffold9: 540498 .. 541934 (-)
RNA-Seq Expression	Spg020940
Synteny	Spg020940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTCCCCATGTGACCGAACAGGCAGTTACAACACCTAAAAGTAAGAAAAGAAAAAAGAAAAGAGCAGCATCTGATCTTGATAGTCTGACAGTTGGAGATGTCAGTGACGTTGGTAAGGATTGTCTGTGAGCTATTGCTTGCGGCTCTTGAATTGTCATTAAACTACTACAACTGTCCAGCTCTAACCTTCCAAATATGTTGGATCAAATAGTGTAATATTCTTTTCAATTTTCACCTTTAACTTGATATCTGGTGAATGTAGGCAATGGCAATGCTTCCGATGTTCTATTTAACGATGATTTAAATGAGCCAACCATGGGAGAGAAACTTGCAAGTTTGAATTTGGAAGACCAGAATGAAGAGGAAGATCGTGAACAAGAACCATCCGTCCCTGCGATACCACCAAGTGCGGACTCTGTTCAGGTTTTGCTTAAGCAAGCACTACATGCAGACGATCGTGCCCTTTTGCTAGAATGCTTATATACCAAGGATGATAAGGTAATCACAATCCTATAACATTTTATTAGTCTACTAACCATTTTGGTACTAATGCATCACATATTGTCTGTTTTCAGGTTATTTCAAAATCAATAGCACAATTAAATTCATCTGATGTTCTCAAGCTTTTACACTCTCTGATATCCATTATCCAATCGAGGTACTTTTGCTTGTTACTAACGACGTTTGGCTTTTTCTTATATTTACATCGTGTCATCAAAAATAAAATACCATACCAAAAATTTGATGTCTTATTACAGAGGGGCCATTCTTGTATGCGCCCTCCCTTGGCTGAGAGGTTTACTTCTCCAACATGCTAGTAGAATAATGTCTCAAGAATCTTCTTTACTCGCCTTGAATTCTCTATATCAGGTTAGCAATGGTTTGTTTTATGAGATTGGTTAAATCATCAGCTTGAAACTTTATTTGCCATCCCAACTATGCACTCAATGAAGCCGTCTCTTTCACGTCCATTAATTATAATGCTCCTGTAGATAAATACAAATATAATTTCTATGTATGTGCAACTCATTGAGTCTAGAATTTCAACTTTCCAATCCGCTCTACTACTATCGAGTAGCTTAGACTTCCTTTACACAGGGGTAAGTGCATTCTTTTCCCTCATCTTTTCATGGCTGATTCTGAGTATCACGGAAACCATCTTCAAGCTCAATGAGGTCCATACTCCTGTCTCCTTCTTGGCAGGTCCTTGACGACGAGGTGGACGAAAATGATGCCATTGTGCCGATTACTTACGAGGAGGACGATAGCGACGATAAGGAATCAGGAGACGAAATGGAAACTGATGAAGATGATGAAGAGAATGAAGAAGTAGAAGTAGCCTTTGAGGATCTTAGTGCTGGTGAAGTGGATGATGACATGAGTGAATGATTATTAAGTCACAAAATCCTTTGTGGGATTTCATTTTTTGAC

mRNA sequence

ATGTCAGGTCCCCATGTGACCGAACAGGCAGTTACAACACCTAAAAGTAAGAAAAGAAAAAAGAAAAGAGCAGCATCTGATCTTGATAGTCTGACAGTTGGAGATGTCAGTGACGTTGGCAATGGCAATGCTTCCGATGTTCTATTTAACGATGATTTAAATGAGCCAACCATGGGAGAGAAACTTGCAAGTTTGAATTTGGAAGACCAGAATGAAGAGGAAGATCGTGAACAAGAACCATCCGTCCCTGCGATACCACCAAGTGCGGACTCTGTTCAGGTTTTGCTTAAGCAAGCACTACATGCAGACGATCGTGCCCTTTTGCTAGAATGCTTATATACCAAGGATGATAAGGTTATTTCAAAATCAATAGCACAATTAAATTCATCTGATGTTCTCAAGCTTTTACACTCTCTGATATCCATTATCCAATCGAGAGGGGCCATTCTTGTATGCGCCCTCCCTTGGCTGAGAGGTTTACTTCTCCAACATGCTAGTAGAATAATGTCTCAAGAATCTTCTTTACTCGCCTTGAATTCTCTATATCAGGTCCTTGACGACGAGGTGGACGAAAATGATGCCATTGTGCCGATTACTTACGAGGAGGACGATAGCGACGATAAGGAATCAGGAGACGAAATGGAAACTGATGAAGATGATGAAGAGAATGAAGAAGTAGAAGTAGCCTTTGAGGATCTTAGTGCTGGTGAAGTGGATGATGACATGAGTGAATGA

Coding sequence (CDS)

ATGTCAGGTCCCCATGTGACCGAACAGGCAGTTACAACACCTAAAAGTAAGAAAAGAAAAAAGAAAAGAGCAGCATCTGATCTTGATAGTCTGACAGTTGGAGATGTCAGTGACGTTGGCAATGGCAATGCTTCCGATGTTCTATTTAACGATGATTTAAATGAGCCAACCATGGGAGAGAAACTTGCAAGTTTGAATTTGGAAGACCAGAATGAAGAGGAAGATCGTGAACAAGAACCATCCGTCCCTGCGATACCACCAAGTGCGGACTCTGTTCAGGTTTTGCTTAAGCAAGCACTACATGCAGACGATCGTGCCCTTTTGCTAGAATGCTTATATACCAAGGATGATAAGGTTATTTCAAAATCAATAGCACAATTAAATTCATCTGATGTTCTCAAGCTTTTACACTCTCTGATATCCATTATCCAATCGAGAGGGGCCATTCTTGTATGCGCCCTCCCTTGGCTGAGAGGTTTACTTCTCCAACATGCTAGTAGAATAATGTCTCAAGAATCTTCTTTACTCGCCTTGAATTCTCTATATCAGGTCCTTGACGACGAGGTGGACGAAAATGATGCCATTGTGCCGATTACTTACGAGGAGGACGATAGCGACGATAAGGAATCAGGAGACGAAATGGAAACTGATGAAGATGATGAAGAGAATGAAGAAGTAGAAGTAGCCTTTGAGGATCTTAGTGCTGGTGAAGTGGATGATGACATGAGTGAATGA

Protein sequence

MSGPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQEPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQVLDDEVDENDAIVPITYEEDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE

Homology

[Close]

BLAST of Spg020940 vs. NCBI nr
Match: XP_038899613.1 (WD repeat-containing protein 43 [Benincasa hispida])

HSP 1 Score: 369.0 bits (946), Expect = 3.1e-98
Identity = 216/267 (80.90%), Postives = 227/267 (85.02%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  EQ V TPKSKK KKKRAASDLDSLT GD+SDVGNG+ASDV+FNDDLNEP+MGEKL
Sbjct: 360 GPHEVEQEVVTPKSKKGKKKRAASDLDSLTTGDISDVGNGDASDVIFNDDLNEPSMGEKL 419

Query: 63  ASLNLEDQNEEEDREQEPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVISK 122
           ASLNL DQNE+E RE+EPSVPAIPPSADSVQVLLKQALHA+DR LLLECLYTKDDKVISK
Sbjct: 420 ASLNLVDQNEDEGREKEPSVPAIPPSADSVQVLLKQALHAEDRVLLLECLYTKDDKVISK 479

Query: 123 SIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLY 182
           SIAQLNSSDVLKLLHSLIS IQSRGAILVC LPWLRGLLLQHAS+IMSQESSLLALNSLY
Sbjct: 480 SIAQLNSSDVLKLLHSLISFIQSRGAILVCVLPWLRGLLLQHASKIMSQESSLLALNSLY 539

Query: 183 Q-------------------------VLDDEVDENDAIVPITYEEDDSDDKESGDEMETD 242
           Q                         VLD+EVDENDAIVPI YEEDDSDDKESGDEMETD
Sbjct: 540 QLIESRISTFQSALLLSSSLDFLYSGVLDEEVDENDAIVPIIYEEDDSDDKESGDEMETD 599

Query: 243 EDDEENEEVEVAFEDLSAGEVDDDMSE 245
           E DEE +EVE AF+DLSAGEVDDDMSE
Sbjct: 600 E-DEERDEVE-AFDDLSAGEVDDDMSE 624

[Close]

BLAST of Spg020940 vs. NCBI nr
Match: XP_022150139.1 (WD repeat-containing protein 43 [Momordica charantia])

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-95
Identity = 216/265 (81.51%), Postives = 225/265 (84.91%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  EQAVTTPKSKK KKKRAASD+DSLT GDVS VGNG+ASDVLFNDD+NEPTMGEKL
Sbjct: 362 GPHEIEQAVTTPKSKKSKKKRAASDIDSLTAGDVSGVGNGDASDVLFNDDINEPTMGEKL 421

Query: 63  ASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           ASLNL DQ+E+E  EQ EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS
Sbjct: 422 ASLNLLDQDEDESHEQEEPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 481

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL
Sbjct: 482 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 541

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYE-EDDSDDKESGDEME 241
           YQ                         VLD+EVD+NDAIVPI YE EDDSDD+ESGDEME
Sbjct: 542 YQLIESRISTFQSAVLLSSSLDFLYTGVLDEEVDDNDAIVPIIYEDEDDSDDQESGDEME 601

[Close]

BLAST of Spg020940 vs. NCBI nr
Match: XP_023513462.1 (WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-92
Identity = 214/270 (79.26%), Postives = 224/270 (82.96%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  EQAVT+PKSKK KKKRAASDLDS T GDVSDVGN + S+VLFNDDLNEPTMG+KL
Sbjct: 349 GPHEIEQAVTSPKSKKSKKKRAASDLDSQTAGDVSDVGNEDTSNVLFNDDLNEPTMGDKL 408

Query: 63  ASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           ASLNLEDQNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL ADDRALLLECLYTKDDKVIS
Sbjct: 409 ASLNLEDQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVIS 468

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSL
Sbjct: 469 KSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSL 528

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEME 242
           YQ                         VLD E +ENDAIVPI YEEDDSDDKE SGDEME
Sbjct: 529 YQLIESRISTFQSALLLSSSLDFLYTGVLDKEAEENDAIVPIIYEEDDSDDKESSGDEME 588

Query: 243 TDEDDEENEEVEV-AFEDLSAGEVDDDMSE 245
           T   DEE   VEV AF+DLSAGEVDDDMSE
Sbjct: 589 T---DEEGGGVEVEAFDDLSAGEVDDDMSE 615

[Close]

BLAST of Spg020940 vs. NCBI nr
Match: XP_023000348.1 (WD repeat-containing protein 43 [Cucurbita maxima])

HSP 1 Score: 349.4 bits (895), Expect = 2.6e-92
Identity = 211/269 (78.44%), Postives = 224/269 (83.27%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  EQAVT+PKSKK KKKRAASDLDS T GDVSDVGN + S+VLFNDDLNEPTMG+KL
Sbjct: 339 GPHEIEQAVTSPKSKKSKKKRAASDLDSQTAGDVSDVGNEDTSNVLFNDDLNEPTMGDKL 398

Query: 63  ASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           A+LNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL ADDRALLLECLYTKDDKVIS
Sbjct: 399 ANLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVIS 458

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSL
Sbjct: 459 KSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSL 518

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEME 242
           YQ                         VLD E +ENDAIVPI YEEDDSDDKE SGDEME
Sbjct: 519 YQLIESRISTFQSALLLSSSLDFLYTGVLDGEAEENDAIVPIIYEEDDSDDKESSGDEME 578

Query: 243 TDEDDEENEEVEVAFEDLSAGEVDDDMSE 245
           TDE+     EVE AF+DLSAGEVDDDMSE
Sbjct: 579 TDEEG-GGVEVEEAFDDLSAGEVDDDMSE 606

[Close]

BLAST of Spg020940 vs. NCBI nr
Match: XP_022964606.1 (WD repeat-containing protein 43 isoform X1 [Cucurbita moschata])

HSP 1 Score: 345.5 bits (885), Expect = 3.7e-91
Identity = 211/270 (78.15%), Postives = 224/270 (82.96%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  +QAVT+PKSKK KKKRAASDLDS   GDVSDVGN + S+VLFNDDLNEPTMG+KL
Sbjct: 349 GPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKL 408

Query: 63  ASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           ASLNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL ADDRALLLECLYTKDDKVIS
Sbjct: 409 ASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVIS 468

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSL
Sbjct: 469 KSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSL 528

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEME 242
           YQ                         VLD+E +ENDAIVPI YEEDDSDDKE SGDEME
Sbjct: 529 YQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEME 588

Query: 243 TDEDDEENEEVEV-AFEDLSAGEVDDDMSE 245
           T   DEE   VEV AF+DLSAGEVDDDMSE
Sbjct: 589 T---DEEGGGVEVEAFDDLSAGEVDDDMSE 615

[Close]

BLAST of Spg020940 vs. ExPASy TrEMBL
Match: A0A6J1D938 (WD repeat-containing protein 43 OS=Momordica charantia OX=3673 GN=LOC111018389 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.6e-95
Identity = 216/265 (81.51%), Postives = 225/265 (84.91%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  EQAVTTPKSKK KKKRAASD+DSLT GDVS VGNG+ASDVLFNDD+NEPTMGEKL
Sbjct: 362 GPHEIEQAVTTPKSKKSKKKRAASDIDSLTAGDVSGVGNGDASDVLFNDDINEPTMGEKL 421

Query: 63  ASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           ASLNL DQ+E+E  EQ EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS
Sbjct: 422 ASLNLLDQDEDESHEQEEPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 481

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL
Sbjct: 482 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 541

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYE-EDDSDDKESGDEME 241
           YQ                         VLD+EVD+NDAIVPI YE EDDSDD+ESGDEME
Sbjct: 542 YQLIESRISTFQSAVLLSSSLDFLYTGVLDEEVDDNDAIVPIIYEDEDDSDDQESGDEME 601

[Close]

BLAST of Spg020940 vs. ExPASy TrEMBL
Match: A0A6J1KMD0 (WD repeat-containing protein 43 OS=Cucurbita maxima OX=3661 GN=LOC111494605 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.2e-92
Identity = 211/269 (78.44%), Postives = 224/269 (83.27%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  EQAVT+PKSKK KKKRAASDLDS T GDVSDVGN + S+VLFNDDLNEPTMG+KL
Sbjct: 339 GPHEIEQAVTSPKSKKSKKKRAASDLDSQTAGDVSDVGNEDTSNVLFNDDLNEPTMGDKL 398

Query: 63  ASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           A+LNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL ADDRALLLECLYTKDDKVIS
Sbjct: 399 ANLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVIS 458

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSL
Sbjct: 459 KSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSL 518

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEME 242
           YQ                         VLD E +ENDAIVPI YEEDDSDDKE SGDEME
Sbjct: 519 YQLIESRISTFQSALLLSSSLDFLYTGVLDGEAEENDAIVPIIYEEDDSDDKESSGDEME 578

Query: 243 TDEDDEENEEVEVAFEDLSAGEVDDDMSE 245
           TDE+     EVE AF+DLSAGEVDDDMSE
Sbjct: 579 TDEEG-GGVEVEEAFDDLSAGEVDDDMSE 606

[Close]

BLAST of Spg020940 vs. ExPASy TrEMBL
Match: A0A6J1HJF3 (WD repeat-containing protein 43 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464569 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.8e-91
Identity = 211/270 (78.15%), Postives = 224/270 (82.96%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  +QAVT+PKSKK KKKRAASDLDS   GDVSDVGN + S+VLFNDDLNEPTMG+KL
Sbjct: 349 GPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKL 408

Query: 63  ASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           ASLNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL ADDRALLLECLYTKDDKVIS
Sbjct: 409 ASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVIS 468

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSL
Sbjct: 469 KSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSL 528

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEME 242
           YQ                         VLD+E +ENDAIVPI YEEDDSDDKE SGDEME
Sbjct: 529 YQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEME 588

Query: 243 TDEDDEENEEVEV-AFEDLSAGEVDDDMSE 245
           T   DEE   VEV AF+DLSAGEVDDDMSE
Sbjct: 589 T---DEEGGGVEVEAFDDLSAGEVDDDMSE 615

[Close]

BLAST of Spg020940 vs. ExPASy TrEMBL
Match: A0A6J1HI85 (WD repeat-containing protein 43 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464569 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.8e-91
Identity = 211/270 (78.15%), Postives = 224/270 (82.96%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  +QAVT+PKSKK KKKRAASDLDS   GDVSDVGN + S+VLFNDDLNEPTMG+KL
Sbjct: 339 GPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKL 398

Query: 63  ASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           ASLNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL ADDRALLLECLYTKDDKVIS
Sbjct: 399 ASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVIS 458

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSL
Sbjct: 459 KSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSL 518

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEME 242
           YQ                         VLD+E +ENDAIVPI YEEDDSDDKE SGDEME
Sbjct: 519 YQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEME 578

Query: 243 TDEDDEENEEVEV-AFEDLSAGEVDDDMSE 245
           T   DEE   VEV AF+DLSAGEVDDDMSE
Sbjct: 579 T---DEEGGGVEVEAFDDLSAGEVDDDMSE 605

[Close]

BLAST of Spg020940 vs. ExPASy TrEMBL
Match: A0A1S3CDX9 (WD repeat-containing protein 43 OS=Cucumis melo OX=3656 GN=LOC103499777 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.4e-91
Identity = 209/268 (77.99%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 3   GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKL 62
           GPH  EQ V TPKSKK KKKRAASDLDS T GDVSDVGNG+ASDV+FNDDLNEP+MGEKL
Sbjct: 360 GPHEIEQ-VITPKSKKSKKKRAASDLDSPTAGDVSDVGNGDASDVVFNDDLNEPSMGEKL 419

Query: 63  ASLNLEDQNEEEDREQE-PSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 122
           ASLNL DQNE+  REQE PSVP IPPSADSVQVLLKQALHADD ALLLECLYTKDDKVIS
Sbjct: 420 ASLNLADQNEDGGREQEDPSVPVIPPSADSVQVLLKQALHADDHALLLECLYTKDDKVIS 479

Query: 123 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 182
           KSIAQLNSSDVLKLLHS+IS IQSRGAILVCALPWLRGLLLQHAS+IMSQESSLLALNSL
Sbjct: 480 KSIAQLNSSDVLKLLHSVISFIQSRGAILVCALPWLRGLLLQHASKIMSQESSLLALNSL 539

Query: 183 YQ-------------------------VLDDEVDENDAIVPITYEEDDSDDKESGDEMET 242
           YQ                         VLD+E ++NDAIVPI YEE+DSD+ E+GDEMET
Sbjct: 540 YQLIEARISTFQSALLLSSSLDFLYTGVLDEEENDNDAIVPIIYEEEDSDENETGDEMET 599

Query: 243 DEDDEENEEVEVAFEDLSAGEVDDDMSE 245
           DEDD E +EVE AF+DLSAGEVDDDMSE
Sbjct: 600 DEDD-ERDEVE-AFDDLSAGEVDDDMSE 624

[Close]

BLAST of Spg020940 vs. TAIR 10
Match: AT1G15420.1 (CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). )

HSP 1 Score: 165.2 bits (417), Expect = 6.4e-41
Identity = 116/264 (43.94%), Postives = 166/264 (62.88%), Query Frame = 0


Query: 6   VTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASD-VLFNDDLNEPTMGEKLAS 65
           + +  +   K KK+ KKRA  + D   +    D G     D VL +D LNEPT+G+KL S
Sbjct: 18  IADTPLREKKHKKKSKKRAEPEPD---IPSTRDSGLDEDRDGVLVDDTLNEPTIGDKLES 77

Query: 66  LNL---EDQNEEEDREQEPSVPAIPPSADSVQVLLKQALHADDRALLLECLYTKDDKVIS 125
           L+L   E  N EE           PP+A SV VLL+QALHADDR+LLL+CLY +D++VI+
Sbjct: 78  LDLLNGEKVNSEESNRDSAPGDDKPPTAASVNVLLRQALHADDRSLLLDCLYNRDEQVIA 137

Query: 126 KSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSL 185
            S+A+LNS++VLKLL++L+ I+QSRGAIL C +PW++ LLL H+S IMSQESSLLALN++
Sbjct: 138 NSVAKLNSAEVLKLLNALLPILQSRGAILACTIPWIKSLLLTHSSGIMSQESSLLALNTM 197

Query: 186 YQVLD--------------------DEVDENDAIVPITYEEDDSD-DKESGDEMETDEDD 245
           YQ+++                    D++DE +   P+ YE+ DSD D+E G E   + D+
Sbjct: 198 YQLIESRVSTIHTAVEVSSGLDLIVDDLDEEEDEGPVIYEDKDSDEDEEEGIEEAMETDE 257

The following BLAST results are available for this feature:

BLAST of Spg020940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899613.1	3.1e-98	80.90	WD repeat-containing protein 43 [Benincasa hispida]	[more]
XP_022150139.1	3.2e-95	81.51	WD repeat-containing protein 43 [Momordica charantia]	[more]
XP_023513462.1	1.5e-92	79.26	WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo]	[more]
XP_023000348.1	2.6e-92	78.44	WD repeat-containing protein 43 [Cucurbita maxima]	[more]
XP_022964606.1	3.7e-91	78.15	WD repeat-containing protein 43 isoform X1 [Cucurbita moschata]	[more]

BLAST of Spg020940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg020940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D938	1.6e-95	81.51	WD repeat-containing protein 43 OS=Momordica charantia OX=3673 GN=LOC111018389 P...	[more]
A0A6J1KMD0	1.2e-92	78.44	WD repeat-containing protein 43 OS=Cucurbita maxima OX=3661 GN=LOC111494605 PE=4...	[more]
A0A6J1HJF3	1.8e-91	78.15	WD repeat-containing protein 43 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HI85	1.8e-91	78.15	WD repeat-containing protein 43 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S3CDX9	2.4e-91	77.99	WD repeat-containing protein 43 OS=Cucumis melo OX=3656 GN=LOC103499777 PE=4 SV=...	[more]

BLAST of Spg020940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15420.1	6.4e-41	43.94	CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148)...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007148	Small-subunit processome, Utp12	PFAM	PF04003	Utp12	coord: 104..192 e-value: 4.5E-12 score: 46.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR42968	WD REPEAT-CONTAINING	coord: 10..186 coord: 183..244
None	No IPR available	PANTHER	PTHR42968:SF14	OS01G0649000 PROTEIN	coord: 10..186
None	No IPR available	PANTHER	PTHR42968:SF14	OS01G0649000 PROTEIN	coord: 183..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020940.1	Spg020940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus