Spg020749 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGAGCGTCTCGACGCTGATGAGGCTCCAGGGGAAAAATGGTCATTTTACGCTCCGATTTCGCTTGTTTAAGCCTCGAATTGCTTCCAAAGCTCCGGTGAGGACCTATAGACATATTATACTCATTTTAAAGCATCTTTCGCAAGGAATTCAACTAAGATAAGCAAATTGGGAGATTCTAAGTGTATAACAAATTTCACCGATCAGACCTACAGATCAGAAGCTCCAACGATGTGAGATTAATTGGCTAAACTCATTAACCAAGTTAACCAATATTCGTTAACTGTGGTTCACTCCACTATAGACCCACAGCTGCACTCTTCTCACTGTAGAATATTTTTGTGTCCATGGATATCGACCAATGTAGTAAGTCAATCTTTCACGTGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCTTGGGTTACCTCTGGTTCCTTAAGTACCACTGATCCCTCTAATGAACAAGTCGTTTAGGGTCCAACCACTAAACAGGAGTTCCTCTCGAGCCAGGAGAGAACGATGCGCCTTTGTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAATGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCAGTCTTGCCCCTGAAATGGTAGGATTATTGAGTTGGCGAATTGGCCACCCTCACCCATACAAATCTAAGGACAATCCCTCCTGAAAAGGGGTTCATAACAGACTCAGGATTGAGATTGGGTTACCTAGGTCATCCTATTGAAATAGAAACCTAAACTAGTCAACAACGTTACATCTAGTGGTTACTATTTCACGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATATGTATCGAATACAAGGTGGGTCGTATCATATAGTGTCACCATGATAAGGTACCCAGCCTTATCGCTATACTATAGACCATTTAAGTTATTACTTGGACACTGATCCCCGTATGTCTCTACATACCAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATCACTCAAATAACGCTTTATTGAGATCGTTTAATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACATTATATGGTTTTTCTTCTAAGAAAACTAGGTTTTTCTTCTAAGAAAACTACAAGTTTTTCCATTGCTTGTCATTTTAACTACTAGTAATGGAAGGGAAGTGAATATCTGTACTATCTATAGAAATTGATGACTTTCCTTTGACCATTTAGGTTGCTGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACAGGATTGCTCAGGTAAAAAGTTTAACTGGGAGCAAGATCTTGTGTATATTGAAGGCTCATGGTGAGCCTCATCTACCCTTCCACCACTGAACTTCTATTTTATACATCAGTCAGAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGCTCAAGGCTAGCTCTTGAAATCCCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCCTGACCCAGTATTACAAGAAGGCAAAGAAGCTTCCCCCTATTTGGAAGCAGTAA ATGATGAGCGTCTCGACGCTGATGAGGCTCCAGGGGAAAAATGGTCATTTTACGCTCCGATTTCGCTTGTTTAAGCCTCGAATTGCTTCCAAAGCTCCGCCCCCATTCAGTCTTGCCCCTGAAATGGTTGCTGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACAGGATTGCTCAGGTAAAAAGTTTAACTGGGAGCAAGATCTTGTGTATATTGAAGGCTCATGCTCTTGAAATCCCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCCTGACCCAGTATTACAAGAAGGCAAAGAAGCTTCCCCCTATTTGGAAGCAGTAA ATGATGAGCGTCTCGACGCTGATGAGGCTCCAGGGGAAAAATGGTCATTTTACGCTCCGATTTCGCTTGTTTAAGCCTCGAATTGCTTCCAAAGCTCCGCCCCCATTCAGTCTTGCCCCTGAAATGGTTGCTGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACAGGATTGCTCAGGTAAAAAGTTTAACTGGGAGCAAGATCTTGTGTATATTGAAGGCTCATGCTCTTGAAATCCCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCCTGACCCAGTATTACAAGAAGGCAAAGAAGCTTCCCCCTATTTGGAAGCAGTAA MMSVSTLMRLQGKNGHFTLRFRLFKPRIASKAPPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHALEIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWKQ Homology
BLAST of Spg020749 vs. NCBI nr
Match: XP_023921946.1 (40S ribosomal protein S13 isoform X1 [Quercus suber] >XP_023921947.1 40S ribosomal protein S13 isoform X2 [Quercus suber] >XP_030935934.1 40S ribosomal protein S13 [Quercus lobata] >KAF3964123.1 hypothetical protein CMV_011555 [Castanea mollissima]) HSP 1 Score: 184.1 bits (466), Expect = 8.7e-43 Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Spg020749 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42 Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Spg020749 vs. NCBI nr
Match: XP_038906798.1 (40S ribosomal protein S13 [Benincasa hispida]) HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42 Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Spg020749 vs. NCBI nr
Match: XP_021687108.1 (40S ribosomal protein S13-like [Hevea brasiliensis]) HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42 Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Spg020749 vs. NCBI nr
Match: XP_021687881.1 (40S ribosomal protein S13-like [Hevea brasiliensis]) HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42 Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44 Identity = 95/122 (77.87%), Postives = 103/122 (84.43%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 1.4e-43 Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 3.1e-43 Identity = 93/119 (78.15%), Postives = 101/119 (84.87%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 9.1e-43 Identity = 90/108 (83.33%), Postives = 97/108 (89.81%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy Swiss-Prot
Match: Q69UI2 (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117200 PE=3 SV=2) HSP 1 Score: 152.1 bits (383), Expect = 4.8e-36 Identity = 86/125 (68.80%), Postives = 93/125 (74.40%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy TrEMBL
Match: A0A7N2MIC4 (Ribosomal_S13_N domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 4.2e-43 Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy TrEMBL
Match: A0A2N9HS23 (Ribosomal_S13_N domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42657 PE=3 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 5.5e-43 Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy TrEMBL
Match: A0A2N9IT03 (Ribosomal_S13_N domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55212 PE=3 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 5.5e-43 Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 7.2e-43 Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Spg020749 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 7.2e-43 Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Spg020749 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 ) HSP 1 Score: 177.2 bits (448), Expect = 1.0e-44 Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 0
BLAST of Spg020749 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A ) HSP 1 Score: 174.5 bits (441), Expect = 6.5e-44 Identity = 90/108 (83.33%), Postives = 97/108 (89.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|