Spg020709 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020709
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold10: 28129355 .. 28132615 (-)
RNA-Seq ExpressionSpg020709
SyntenySpg020709
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTACTCGCGTAATCGTTGTACCCATCTCGATCTATGTTAGGAAGGCCATAGAACTGGTTAATGGAGGTCGAGTCAAAAGGAATGGTTTTACCCCTAACAAAGGAAGTAGTGGATCCTTCCACCATGTTAGCGTAAATTGGGACTACAGCAGTCTCGAGGTGGCTAGTGAATCTACCCCAACCTCTCTCTATTATGCTATGGGCGAGGTTTGGTTGAGATTGGGCACTTGGAACTAAACCTCTCTCTAGAATAACCCCCTATTTACCACATAGGAGTTGAAGACCGTCTCAGCATCCCTACTAACGAATTTAAGCCTATCAAATGGTGTAGAGGATAAAGAAGCTACGAACCTCCTTGATCTTTTAGCACTCATTGTGGCGGGATAAAAAGGGTAAGGAACTAAGAACAAGCTAGAGGTTTAAAAACAAGGATGGGTGTTCCCTAAAAAGATCTAAAGACAACCTAAGAGCAAAGGAAACTAAGAATTTATCCACAAATGTTCCAAAAACTTCAACTCTTTTTAGCCCTTCCGCCTTTGTATTCACAATATAAACAAACCAAGCAGAAAAATCCAACAAAATATAGCAGAAAAAATAGATAAATAAACTAAAAAACAACAGCTCAGCACTTCCAACAACGATTTTCAACACAAAAATTCACAAGAACATGCTCAAAATACGCACATACATCTTCTAATCTTAAGTAAATGCTTCTAAACTTTGAAAACCAGGTAAAAATTAGAAGAATGAGTTGAAAATTCGTTACCCATTGCTTTGATCACGAAAAATCGTGTAAACCCGAGACTTTCCTTGGATTATTTTCTCTTGTCATCTACTGTGGAAGTTGAAATAAAGTTGTTGTTGTTTCATTGTTGAAGAAAAATGAAGAACTTTTGGTTGAGGTATCCTTGATAAATTTGGAATTTATTAACAAAGAAAGGAAATAAAGAAGAAAAGAAAAGAAAAGAAAATAAAAGGAAAAGGAAAAGTAAATAGGAAAATGAAAAAAAAAGAAGAAAGAAAATGGGAAAAGACAGCAAACGGTGTTTAAAAACCCACCACCGAAAAGATTTATTTTAGCTCATTTTCAGCCCATTTTCCCATCTTTTTCCATCAAAACTTCAGAGCATTCGAGGGAGAGAGTGAAGGAAGGAGAAGAAGGAGCTTCGTAGGGTTTGGAGGTTGAAGAAGATAGGAAATAGCTCAAGCAAAGGTAGCCATGATAGAATTTGGGTTCAACCTGCCTATCTCTGGTTTCTGATTCGGTTTGAGCTACACAAGAAGAACTAAAAGGTGAGGTCTGATTTTCTTTAAAGTTAGTCCATTTTCTAACAAATTTAATGAAGGAAGCTTGAGCTAAATCTGATGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACATAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGGTATGGTTAGAAAGCTTATTCCATTTCCTATAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATTTGTATTTCCTGTGTTTGGGGCATTTATGGACAAATCGGTTGGGAATCTCGTTTTTATTTCTTCAGGTAAGTTGTAGAGTGTTCAAAAATGAAGAGTTTGATATGTAGTACATTAATTTTAGTTAAGTATTGAGGAAGTTATGAGTGTGGGAAGTTATGGTATTGAATCTGGAAAATCTGGAAAACAATTTGAAGTGCAATTTTAATTCAAGTGTTTAGAGTTCATGAGCATGGAAAGATAAGACTACTTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTGAGTGACAAAACCAATTCCGAAAATTGTTTCTAAACGGTTGTTCATGATTAGATATTTTACATGTTTTTTTATGAATGATACATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAAAGAGGTTTATATACGAGCACGTGATTATTGACTTAATGGAAAGTAGTTGAAACGATATCATTTAAAGTAAAGTATGTATTAGCAAGTATTGTTTAAAAGATTTTCAGTTTTTCATGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAAAGATAAGTAGGCATGTTTTAAGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTTAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTTGATTTGTCATGTTAGTTAAGATGTTTTATATAATTGATATGCCTTTCTAGATTTTAATGACGTACTTGCGGAGTATTTGAGAAAGCTTTTATCATTACACGTTTATGTTTAACGCTTTGATTGAACAGATTTATACGTTTAAAGGTTTAACACGTGTTCTGATTTCCGGGTTTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCACTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTTTCTGTATTGTAAATGTTTTTGTAAGGATTGGATAATTTACGGTTTGTGTAAGTTATGGAGGTCGTGGTTGTTTAAACCAAGTTGAATATGTTTTTGGCTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACCCCATGTATGTCTAAAGTTTTCAGGGTTTCCGCTGTGTTGCGTTACATGTAAAGTATTTTACATCAAAGATTAATATGTTTATCAGGTTTAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGAGGGGGTGTGACAAATCGCCCAAAAGCACGAAAAACCCACGAAATCACTACTATGAAACTGAAGAACTTGAAGAAAAGTGGTTGA

mRNA sequence

ATGGTTACTCGCGTAATCGTTGTACCCATCTCGATCTATGTTAGGAAGGCCATAGAACTGGTTAATGGAGGTCGAGTCAAAAGGAATGGTTTTACCCCTAACAAAGGAAGTAGTGGATCCTTCCACCATGTTAGCGTAAATTGGGACTACAGCAGTCTCGAGGTGGCTAGTGAATCTACCCCAACCTCTCTCTATTATGCTATGGGCGAGGAGGATCTCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTTTCTGTATTGTAAATGTTTTTGGTCAACAGGGATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGAGGGGGTGTGACAAATCGCCCAAAAGCACGAAAAACCCACGAAATCACTACTATGAAACTGAAGAACTTGAAGAAAAGTGGTTGA

Coding sequence (CDS)

ATGGTTACTCGCGTAATCGTTGTACCCATCTCGATCTATGTTAGGAAGGCCATAGAACTGGTTAATGGAGGTCGAGTCAAAAGGAATGGTTTTACCCCTAACAAAGGAAGTAGTGGATCCTTCCACCATGTTAGCGTAAATTGGGACTACAGCAGTCTCGAGGTGGCTAGTGAATCTACCCCAACCTCTCTCTATTATGCTATGGGCGAGGAGGATCTCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTTTCTGTATTGTAAATGTTTTTGGTCAACAGGGATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGAGGGGGTGTGACAAATCGCCCAAAAGCACGAAAAACCCACGAAATCACTACTATGAAACTGAAGAACTTGAAGAAAAGTGGTTGA

Protein sequence

MVTRVIVVPISIYVRKAIELVNGGRVKRNGFTPNKGSSGSFHHVSVNWDYSSLEVASESTPTSLYYAMGEEDLWFSLVFRAFWGVQVESEAPFDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVFGQQGSLEEDDVCWLHAISLTKLAGSLGGGVTNRPKARKTHEITTMKLKNLKKSG
Homology
[Close]
BLAST of Spg020709 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-23
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 0 

Query: 110 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVFGQQGSLE 169
           PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ELY+E F  V +F   G + 
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVE-FVHVEMFWLAGIVR 79

Query: 170 EDDVCWLHAISLTKLAGSLGGGVTNRPKARK 201
           EDDVCWLHA+   K AG  GGGV   P +++
Sbjct: 80  EDDVCWLHAVFRAKTAGGPGGGVMPPPTSKR 109

[Close]
BLAST of Spg020709 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-23
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 0 

Query: 110 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVFGQQGSLE 169
           PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ELY+E F  V +F   G + 
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVE-FVHVEMFWLAGIVR 79

Query: 170 EDDVCWLHAISLTKLAGSLGGGVTNRPKARK 201
           EDDVCWLHA+   K AG  GGGV   P +++
Sbjct: 80  EDDVCWLHAVFRAKTAGGPGGGVMPPPTSKR 109

[Close]
BLAST of Spg020709 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-20
Identity = 61/107 (57.01%), Postives = 68/107 (63.55%), Query Frame = 0 

Query: 110 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVF------- 169
           PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ELY ES  +  +F       
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 170 --------GQQGSLEEDDVCWLHAISLTKLAGSLGGGVTNRPKARKT 202
                   G  G +  DDVCWLHAI   K AG  GGGVT      +T
Sbjct: 382 AASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVSET 428

[Close]
BLAST of Spg020709 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-20
Identity = 61/107 (57.01%), Postives = 68/107 (63.55%), Query Frame = 0 

Query: 110 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVF------- 169
           PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ELY ES  +  +F       
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 170 --------GQQGSLEEDDVCWLHAISLTKLAGSLGGGVTNRPKARKT 202
                   G  G +  DDVCWLHAI   K AG  GGGVT      +T
Sbjct: 382 AASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVSET 428

[Close]
BLAST of Spg020709 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 5.2e-20
Identity = 61/106 (57.55%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 106 TGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIES-----FCIVN 165
           T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ELY ES     FC   
Sbjct: 76  TVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFT 135

Query: 166 -------------VFGQQGSLEEDDVCWLHAISLTKLAGSLGGGVT 194
                        + G  G +  DDVCWLHA+   K  G  GGGVT
Sbjct: 136 NQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg020709 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 0 

Query: 110 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVFGQQGSLE 169
           PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ELY+E F  V +F   G + 
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVE-FVHVEMFWLAGIVR 79

Query: 170 EDDVCWLHAISLTKLAGSLGGGVTNRPKARK 201
           EDDVCWLHA+   K AG  GGGV   P +++
Sbjct: 80  EDDVCWLHAVFRAKTAGGPGGGVMPPPTSKR 109

[Close]
BLAST of Spg020709 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 0 

Query: 110 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVFGQQGSLE 169
           PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ELY+E F  V +F   G + 
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVE-FVHVEMFWLAGIVR 79

Query: 170 EDDVCWLHAISLTKLAGSLGGGVTNRPKARK 201
           EDDVCWLHA+   K AG  GGGV   P +++
Sbjct: 80  EDDVCWLHAVFRAKTAGGPGGGVMPPPTSKR 109

[Close]
BLAST of Spg020709 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 61/107 (57.01%), Postives = 68/107 (63.55%), Query Frame = 0 

Query: 110 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVF------- 169
           PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ELY ES  +  +F       
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 170 --------GQQGSLEEDDVCWLHAISLTKLAGSLGGGVTNRPKARKT 202
                   G  G +  DDVCWLHAI   K AG  GGGVT      +T
Sbjct: 382 AASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVSET 428

[Close]
BLAST of Spg020709 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 61/107 (57.01%), Postives = 68/107 (63.55%), Query Frame = 0 

Query: 110 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIESFCIVNVF------- 169
           PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ELY ES  +  +F       
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 170 --------GQQGSLEEDDVCWLHAISLTKLAGSLGGGVTNRPKARKT 202
                   G  G +  DDVCWLHAI   K AG  GGGVT      +T
Sbjct: 382 AASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVSET 428

[Close]
BLAST of Spg020709 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 61/106 (57.55%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 106 TGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSSSSSSTWVELYIES-----FCIVN 165
           T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW+ELY ES     FC   
Sbjct: 76  TVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFT 135

Query: 166 -------------VFGQQGSLEEDDVCWLHAISLTKLAGSLGGGVT 194
                        + G  G +  DDVCWLHA+   K  G  GGGVT
Sbjct: 136 NQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

The following BLAST results are available for this feature:
BLAST of Spg020709 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27998.13.8e-2367.03reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.13.8e-2367.03reverse transcriptase [Cucumis melo var. makuwa][more]
TYK25935.12.3e-2057.01gag/pol protein [Cucumis melo var. makuwa][more]
KAA0040194.12.3e-2057.01gag/pol protein [Cucumis melo var. makuwa][more]
KAA0062409.15.2e-2057.55reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg020709 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg020709 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DX391.9e-2367.03Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG91.9e-2367.03Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7T9P71.1e-2057.01Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000... [more]
A0A5D3DR181.1e-2057.01Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032... [more]
A0A5A7V9N32.5e-2057.55Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
BLAST of Spg020709 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020709.1Spg020709.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016779 nucleotidyltransferase activity