Spg020694 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020694
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGATA transcription factor
Locationscaffold10: 26898798 .. 26901839 (-)
RNA-Seq ExpressionSpg020694
SyntenySpg020694
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCTTCTCAAGAAGACGATTTGGTGGAGGAAATTTTGGATTTCAATGGAGCTAATCTCGTCGCCGGCGAGGAGTGTGAGGTCGACGAGTTTTTGAACTTCTATAATGGTGATTTCGAACATGGGTCTGCTTTGAGAGTTCAGGAAGATGACGATGACGACGAGTTTGAGAAGAATCGGGTCTCTGTTTCGTTGGATTCGAACCAGTCTGGCGAGTTTTTGGACTTCGGAGAGGACGATTCGAACTCGCTTCTCGCCGTTGAGCTTGCTATTCCGGTAAATTAATTTATGGGTTTTTGTTTTGGTTCGATTTCAGAAGTATTTAGTGGAACAAAAAATTGAAATTGAAATCCCCCTCTTTTCAAACAAATCCACCCCCCCCCCCCACCGTCTTCTTCAAACCCCGTCACCACAACCCTTATTCTTCTTCTTAGCCTAAATCAACCTACTCGAACATCGCCGCTTTGAAGCTACTGTGAGTCATTGCTGCTCGTATGGGTTTTGGTTCTTTTTTTTTTCTCAGATCTGAAGATGGGAGCGGATTCAGGCACACGCGAGAGGAAGAGAGGGTGAGAAGAAGAGGGGTTCGGATTTTGAAGAAGAAGGAGCTCCGGCGACGATGGAAGGATCTCCGACGGCGACAGGGAAGACTTCGGCGGCGGAGAGAAGTAGAGAGAGAAGGTGGGGGAGGAGGAGAGAGAAGTTTCTTTTTTTTTTAATAATAATAATGGTTTTTTTAATTTTATTATTATTATTATTATATTTTAATAATAATAATAATAATAATTTTATTATTTTATTATTATATTATTATTATTTTAATTAAAAATCAATATTTTATTATTTTAAACTGCCACGTCAGCCCTAGAGGGACTCAATAGAAACATTTCCAGAACAGTAGGGACTTGATTGTCCGATTTTGAAACGTAGGGACCTATTAGAAACTGACTCGAAACATGAGGGACCAAAAAGGTATTTTATCCTTGATTTATTTAGAAGTATTACTATGACAATATATATACATATAATATATATAAAAAAAAGAAAAATTAATAATGTGTCCCCAATGTGTCGTGTCCTAAATTTTTAGAAATTGGCGTGTCGCCGTGTCCGTGTCCATGTCGTGTCGTTAGCATGTCGCGTGTTCGTGTCCGTGCTTCTTAGGTTGGAGGCCTTTGGGCTTGTGAGACGAGCTAGGCTCGTGGGTGACCTTAGATCATTGGCCTCATTCTTAAGGTGGGATCAGTTGGCTGGGGTCCTTGTCCCTTCAGGTTTGAGAACATATGGATGGATCACCTTTCCTTCAAGTCTTCATTTTTGTCCTGGTGGAATATGGAGGTCCCTGGGAATTGAAAGGGCTACCGTCTTATGGGGAAAGTTGAGGATCTTGAAAGGAGTTCTTAAGAAGTGGAATTGAGAGGTTTTTGGGGATGTTAGAAGGAAGAAACAAGAGATTTTGGGAGGATTAAAATTATTGATGACCAAGAAGAGGGAGGAGTTTAGTGGAGGGTTTTAAGGAGCATTTGGCTTTAAAAATGGAGTTTGCGAAGGTGATTAGGAGAGAGACTAGTAGTTTTTGTAGGCAAAAAGCTAAAGTGAAGTGGGCCAAGAGAGGGGACTGCAATTTGGCCTTCTTCCATCAAATGGTTAGTGGTAGGAGAAGTAAGAATTTCATTAATTCTGGTGAATGAGAAGGGGGAAGAGGTAAAAGGGACTAAGGAGATTGAGGAGGGAATTCTTTCGTTCTTCTCGAACCTTTACAAGCCTCTGGTTCCGCACTTCCGCCAGACCCATTGTGGAAGGTCTAAATTGGTGTTCGATATCGGAACCGGATAGGAGAGAGTTGGAGTCTTCCTTCTCGATGGAAGAGATCAAAAAGATGATTTTTGATTACGATGGGAACAAGTCTCCAAGCCCATATGGTTTCTCGATGGGGTTCTTTTAGGATAATTGGGATGGGATTAAATTGGACATGGAGTGAGTGCTTAAGGAATTTTTCGAGAGAGGTATTGTAGATAGCTCCATGGATGAGACTTTTGTGTGCCTTATTCCTAAGAAGGGAAGAGGGTTGGTAAGGTTAAAGTTTTCAGACCCATCGACCTTGTTTTAAGTGTGTATAAGGTCATAGCGAAGGTGTTGGCTAATAAGCTTAATCAAGTCTTTCCTTCAACGATCTTTGAGTCCCAGGGGGCTTTCATAGCAGGGAGACAAATCTTGGACTAGGCTCGCTATTGAGGATATAGGCGTGATAAAAAGGAGGGGTAAACTTTAAGACTGATTTTGAAAAAGCCTATGACCATGTGGACTGGAATTTTCTCAATAAGATTCTAGCCAAAAAAGGCTTCAGGTATTGTTGGAGATCGTGGATTTGGAGTTGTGTTAGATTGGTGTAGTACTTCATTCTCATTAATGGTTGCCCTAAGGGTCGTATACTTGCTTCATAAGAGGCCTTAGATAGGGTGATCTGCTTCGCCTTTCCTTTTCTTATTAGTGATGGATCCTCTTAGTATAATGGTGTCGAGAGGTGTAGAGGATGGTATTCTGGATGGTTTTGAGGTGAGTAGGAATCAAGTGTCCTAATCTCATCTCCAGTTTGCAGACAATACCATTTTCTTTTATTATGGGAAGGAAGAATCTTTTTGTATCTTGAATTATATCTTAGCTTTCTTTGAGGTGTCAGACTTAAGATAAACATAGCAAAATGGACCTTGATAAGGTTGGGAGATGGGCGGCTTTGGCGGGATGTGACGCGGGTTCCTTCCCTTCTTCTTATCTGGGCCTCCTTCTAGGTCATAATCCTAAAAACCTTTCTTTTTGGACCCATGTGGTGGAGAGAAGGTGAGGAAAATATTAGCTTCATGAAAGAGGAGCTTCTCTAAAGGTGGTAGGTTGAAGTTTATATGCTCAATCTTAAGTGGGATTTCGGTTTGCTTTTTTTCGTTGATTAGGGCTCCGTGCAGGGTGTGTAGGGCTCTTGAGAAACTTATGAGGGACTTCTTATGGGAGGGAGTCGATGAGGGGAGTGGCGCATCTCGTTAG

mRNA sequence

ATGAAACCTTCTCAAGAAGACGATTTGGTGGAGGAAATTTTGGATTTCAATGGAGCTAATCTCGTCGCCGGCGAGGAGTGTGAGGTCGACGAGTTTTTGAACTTCTATAATGGTGATTTCGAACATGGGTCTGCTTTGAGAGTTCAGGAAGATGACGATGACGACGAGTTTGAGAAGAATCGGGTCTCTGTTTCGTTGGATTCGAACCAGTCTGGCGAGTTTTTGGACTTCGGAGAGGACGATTCGAACTCGCTTCTCGCCGTTGAGCTTGCTATTCCGGCACACGCGAGAGGAAGAGAGGGTGAGAAGAAGAGGGGTTCGGATTTTGAAGAAGAAGGAGCTCCGGCGACGATGGAAGGATCTCCGACGGCGACAGGGAAGACTTCGGCGGCGGAGAGAAGTAGAGAGAGAAGGTTGGAGGCCTTTGGGCTTGTGAGACGAGCTAGGCTCGTGGGTGACCTTAGATCATTGGCCTCATTCTTAAGGTGGGATCAGTTGGCTGGGGTCCTTGTCCCTTCAGGTTTGAGAACATATGGATGGATCACCTTTCCTTCAAGTCTTCATTTTTGTCCTGGTGGAATATGGAGGTCCCTGGGAATTGAAAGGGCTACCGTCTTATGGGGAAAGTTGAGGATCTTGAAAGGAGTTCTTAAGAAGGCTCCGTGCAGGGTGTGTAGGGCTCTTGAGAAACTTATGAGGGACTTCTTATGGGAGGGAGTCGATGAGGGGAGTGGCGCATCTCGTTAG

Coding sequence (CDS)

ATGAAACCTTCTCAAGAAGACGATTTGGTGGAGGAAATTTTGGATTTCAATGGAGCTAATCTCGTCGCCGGCGAGGAGTGTGAGGTCGACGAGTTTTTGAACTTCTATAATGGTGATTTCGAACATGGGTCTGCTTTGAGAGTTCAGGAAGATGACGATGACGACGAGTTTGAGAAGAATCGGGTCTCTGTTTCGTTGGATTCGAACCAGTCTGGCGAGTTTTTGGACTTCGGAGAGGACGATTCGAACTCGCTTCTCGCCGTTGAGCTTGCTATTCCGGCACACGCGAGAGGAAGAGAGGGTGAGAAGAAGAGGGGTTCGGATTTTGAAGAAGAAGGAGCTCCGGCGACGATGGAAGGATCTCCGACGGCGACAGGGAAGACTTCGGCGGCGGAGAGAAGTAGAGAGAGAAGGTTGGAGGCCTTTGGGCTTGTGAGACGAGCTAGGCTCGTGGGTGACCTTAGATCATTGGCCTCATTCTTAAGGTGGGATCAGTTGGCTGGGGTCCTTGTCCCTTCAGGTTTGAGAACATATGGATGGATCACCTTTCCTTCAAGTCTTCATTTTTGTCCTGGTGGAATATGGAGGTCCCTGGGAATTGAAAGGGCTACCGTCTTATGGGGAAAGTTGAGGATCTTGAAAGGAGTTCTTAAGAAGGCTCCGTGCAGGGTGTGTAGGGCTCTTGAGAAACTTATGAGGGACTTCTTATGGGAGGGAGTCGATGAGGGGAGTGGCGCATCTCGTTAG

Protein sequence

MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHARGREGEKKRGSDFEEEGAPATMEGSPTATGKTSAAERSRERRLEAFGLVRRARLVGDLRSLASFLRWDQLAGVLVPSGLRTYGWITFPSSLHFCPGGIWRSLGIERATVLWGKLRILKGVLKKAPCRVCRALEKLMRDFLWEGVDEGSGASR
Homology
BLAST of Spg020694 vs. NCBI nr
Match: XP_023007305.1 (GATA transcription factor 5-like [Cucurbita maxima] >XP_023007306.1 GATA transcription factor 5-like [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 9.5e-26
Identity = 70/96 (72.92%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           M+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEHGSALRV+E+DD  EFEK+
Sbjct: 19  MESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYQEFEKD 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHA 97
            VSVS DSNQSGE    GE+DS SLLAVELAIP  A
Sbjct: 79  LVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDA 114

BLAST of Spg020694 vs. NCBI nr
Match: KAG7035058.1 (GATA transcription factor 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-25
Identity = 70/96 (72.92%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           M+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEHGSALRV+E+DD  EFEK+
Sbjct: 19  MESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYHEFEKD 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHA 97
            VSVS DSNQSGE    GE+DS SLLAVELAIP  A
Sbjct: 79  LVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDA 114

BLAST of Spg020694 vs. NCBI nr
Match: KAG6605045.1 (GATA transcription factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-25
Identity = 70/96 (72.92%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           M+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEHGSALRV+E+DD  EFEK+
Sbjct: 19  MESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYREFEKD 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHA 97
            VSVS DSNQSGE    GE+DS SLLAVELAIP  A
Sbjct: 79  LVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDA 114

BLAST of Spg020694 vs. NCBI nr
Match: XP_022948191.1 (GATA transcription factor 5-like [Cucurbita moschata] >XP_022948192.1 GATA transcription factor 5-like [Cucurbita moschata])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-25
Identity = 70/96 (72.92%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           M+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEHGSALRV+E+DD  EFEK+
Sbjct: 19  MESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYREFEKD 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHA 97
            VSVS DSNQSGE    GE+DS SLLAVELAIP  A
Sbjct: 79  LVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDA 114

BLAST of Spg020694 vs. NCBI nr
Match: XP_023532489.1 (GATA transcription factor 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-25
Identity = 69/96 (71.88%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           M+ +Q+D LVEEI   NGANLVAGE+ EVDEF NF NGDFEHGSALRV+E+DD  EFEK+
Sbjct: 31  MESAQQDALVEEIWCLNGANLVAGEDFEVDEFFNFSNGDFEHGSALRVEENDDYREFEKD 90

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHA 97
            VSVS DSNQSGE    GE+DS SLLAVELAIP  A
Sbjct: 91  LVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDA 126

BLAST of Spg020694 vs. ExPASy TrEMBL
Match: A0A6J1L063 (GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111499842 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.6e-26
Identity = 70/96 (72.92%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           M+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEHGSALRV+E+DD  EFEK+
Sbjct: 19  MESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYQEFEKD 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHA 97
            VSVS DSNQSGE    GE+DS SLLAVELAIP  A
Sbjct: 79  LVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDA 114

BLAST of Spg020694 vs. ExPASy TrEMBL
Match: A0A6J1G8K4 (GATA transcription factor OS=Cucurbita moschata OX=3662 GN=LOC111451842 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.8e-26
Identity = 70/96 (72.92%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           M+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEHGSALRV+E+DD  EFEK+
Sbjct: 19  MESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYREFEKD 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHA 97
            VSVS DSNQSGE    GE+DS SLLAVELAIP  A
Sbjct: 79  LVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDA 114

BLAST of Spg020694 vs. ExPASy TrEMBL
Match: A0A6J1JGE0 (GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111484266 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.1e-23
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           MK +Q DD+VE+    NGA+LVAGE+ EVDEFLNF +GDFEHGSALRV+EDDD +EFEKN
Sbjct: 19  MKFAQPDDMVEDDECSNGADLVAGEDFEVDEFLNFSHGDFEHGSALRVEEDDDYEEFEKN 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHA 97
           R+SVS  SNQSG F   GE+ S +++AVELAIP  A
Sbjct: 79  RLSVSPYSNQSGGFPTAGEEGSKAVVAVELAIPGDA 114

BLAST of Spg020694 vs. ExPASy TrEMBL
Match: A0A6J1J7X0 (GATA transcription factor 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484266 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-22
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           MK +Q DD+VE+    NGA+LVAGE+ EVDEFLNF +GDFEHGSALRV+EDDD +EFEKN
Sbjct: 19  MKFAQPDDMVEDDECSNGADLVAGEDFEVDEFLNFSHGDFEHGSALRVEEDDDYEEFEKN 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIPAHARGR 100
           R+SVS  SNQSG F   GE+ S +++AVELAIP   + R
Sbjct: 79  RLSVSPYSNQSGGFPTAGEEGSKAVVAVELAIPNQNQNR 117

BLAST of Spg020694 vs. ExPASy TrEMBL
Match: A0A1S3CE81 (GATA transcription factor OS=Cucumis melo OX=3656 GN=LOC103499720 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-22
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 0

Query: 1   MKPSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQEDDDDDEFEKN 60
           MK +Q+D LVEE+   NGANLV+GE+ E++EFLNF NGD EHGS+LR QEDDD +EFEKN
Sbjct: 19  MKSAQQDALVEEVWCLNGANLVSGEDFEIEEFLNFSNGDLEHGSSLRPQEDDDCEEFEKN 78

Query: 61  RVSVSLDSNQSGEFLDFGEDDSNSLLAVELAIP 94
           R S+S +SNQ+G     G++DS SLLAVELA P
Sbjct: 79  RFSLSSNSNQTGGSPVVGDEDSKSLLAVELAFP 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023007305.19.5e-2672.92GATA transcription factor 5-like [Cucurbita maxima] >XP_023007306.1 GATA transcr... [more]
KAG7035058.11.2e-2572.92GATA transcription factor 5 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6605045.11.6e-2572.92GATA transcription factor 5, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022948191.11.6e-2572.92GATA transcription factor 5-like [Cucurbita moschata] >XP_022948192.1 GATA trans... [more]
XP_023532489.13.6e-2571.88GATA transcription factor 5-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1L0634.6e-2672.92GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111499842 PE=3 SV=1[more]
A0A6J1G8K47.8e-2672.92GATA transcription factor OS=Cucurbita moschata OX=3662 GN=LOC111451842 PE=3 SV=... [more]
A0A6J1JGE08.1e-2366.67GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111484266 PE=3 SV=1[more]
A0A6J1J7X01.4e-2264.65GATA transcription factor 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A1S3CE812.4e-2264.52GATA transcription factor OS=Cucumis melo OX=3656 GN=LOC103499720 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020694.1Spg020694.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding