Spg020687 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020687
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	scaffold10: 25923048 .. 25924934 (+)
RNA-Seq Expression	Spg020687
Synteny	Spg020687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCCTTGAGGCTAAAGCAATTCTTGAGGGTTTAAGATCTTACGTGATTTCGACAGAGGAAGAACGGGTCAACACCCTTTTGTCGTTTGTGGTCGAGTCTGATTCCAGCAAGGTCATCAATGCCCTAAATCAAGAGGTTGAAGACCATTCGAAAATTTCCTTGATGATCAAAGGCATTAGTGATCTTCTCCCCTCTGCAAATGTCTCATCTTTATCCAAATGCTCTAGGATGGAGAACAGGGGAGCTCAGACTTTGAAGCGCGCAACAACTGTACATAGGAATTTTTCGATTTTTTTGGGTGCAACTTGTATCCTATTTTGGGAAGTTCCATTTTTTTTTTTTTGTAGGGATAACGTTCTCCTTGGCTCTCTTCAGCTTTAATTGAAGAGTTTGGTGTACCTAATTTTTCTAGTTAATGGATGTCTATTTTTCTCCCAAAAAAAATAATATATTAATTTAAAAAAGTAATTAAAATTGAAGGAGTGTAGAACACTCAAGCAGAAGCGACTTGGATCGAAAACACTTTAATTTCAATAATTTTGCAAAGGAAAACATAATAACCGAAAATAAAGCAAGCAAAACCAACCTTTTTGGAGCTCGATTCTCAACACTTTGTTGGTTGAATTTGATCACGAACACATCATGGACGACCACCAACGTCTTCCCCACTATTAGGAAGAGAAAATAGTAGAATTTGAGAGAACAGTGTAATGTCTTGAGAGAACCTTTTTCCAACCGTCCAAGAAGAAGATTTCAAGCTGATATCCATCTCCTTTTAAAGAGCATATGCATGTGAATCAAGCTTGAAAAATAGACAACAAGAAATGGAGGGGATTAGTCATTCCAAGATGTGTTAACACTACACAATTTGCCTCTTGGAATTTTTATTTAAGAAAGATTGAAAAATGATATTCAATTTCCCAAATCTTCCTTTAACTGACTTTAAATAATTACTTTTAAAAAAAAATTAATTTTAAATAATTAATTAAAATGTTCAATTAATTATAATTATTTAATTTAATATCAAATATTAAACTAAATAATTCCACTAATCCCGACCTCTCTCAAAATCGTTCTCTCGTACATGAATCCCTATTCACATGTATAATATTTAAATCGTATTTAAATATTTCTAACTCTCTCAAAATATAGTTTAATTCATAATTAAACTATTATGTCGAATATATCGTATATAATTGAAGTTAACTCCCTAAACCGAATTTGAACGCTTCAAATTCTTTCATCACACTATTATTAAGGTTTAGTTCGTATGAGCTAGTAAGGGGACCTAATGGACCTACAGATCATGGGCTCCAACGATCTGAGATTAACCGGCTAAACTCTTTAACCTAGTTAACAAACATTCGTTAACTACCGGGACACTCCACTATAGCCCAGTGGTTGCACTCCCCTCACTGTAGATATATTTCTGTCCACCCGATATAACAATGATTAGTAAGTCGATCTTTCACAGGTTGTTCGTAACTACAGCTGGGTCAAATGTCCGTTTTACCCCTGAATTTACCTCTTGTTCCTTAAGTCCCACTGATCCTCTAATGAATAATTGGTTTGTGGTCCAACCACTAAACCAAGTCCCTCTCGAGCCCAATGAGAGAGTGGGGCCCCTTGTTCAAGACTTGGAGTTAGCACTTAAGGGAACAACCTTTCTACTATCCCTAAAAGCAGGTAGGAGCGAATTCCATCTTGCAGGACTATGTCCCTAGCTATCCACCCGGTCTTATCCTTGAAATGGGGGGCTTATTGAGTCAGCGAACTCGGGTCACTCTCACCCATACAGATCTAAGGATAATCCCGAATAAACAGGAGTTCATACTTAGCTCAAGATTAAGATCGAGTTACGTAGGTCATCGTATGAAATTG

mRNA sequence

ATGAAAATCCTTGAGGCTAAAGCAATTCTTGAGGGTTTAAGATCTTACGTGATTTCGACAGAGGAAGAACGGGTCAACACCCTTTTGTCGTTTGTGGTCGAGTCTGATTCCAGCAAGGTCATCAATGCCCTAAATCAAGAGGTTGAAGACCATTCGAAAATTTCCTTGATGATCAAAGGCATTAGTGATCTTCTCCCCTCTGCAAATGTCTCATCTTTATCCAAATGCTCTAGGATGGAGAACAGGGGAGCTCAGACTTTGAAGCGCGCAACAACTCAGGTAGGAGCGAATTCCATCTTGCAGGACTATGTCCCTAGCTATCCACCCGGTCTTATCCTTGAAATGGGGGGCTTATTGAGTCAGCGAACTCGGGTCACTCTCACCCATACAGATCTAAGGATAATCCCGAATAAACAGGAGTTCATACTTAGCTCAAGATTAAGATCGAGTTACGTAGGTCATCGTATGAAATTG

Coding sequence (CDS)

ATGAAAATCCTTGAGGCTAAAGCAATTCTTGAGGGTTTAAGATCTTACGTGATTTCGACAGAGGAAGAACGGGTCAACACCCTTTTGTCGTTTGTGGTCGAGTCTGATTCCAGCAAGGTCATCAATGCCCTAAATCAAGAGGTTGAAGACCATTCGAAAATTTCCTTGATGATCAAAGGCATTAGTGATCTTCTCCCCTCTGCAAATGTCTCATCTTTATCCAAATGCTCTAGGATGGAGAACAGGGGAGCTCAGACTTTGAAGCGCGCAACAACTCAGGTAGGAGCGAATTCCATCTTGCAGGACTATGTCCCTAGCTATCCACCCGGTCTTATCCTTGAAATGGGGGGCTTATTGAGTCAGCGAACTCGGGTCACTCTCACCCATACAGATCTAAGGATAATCCCGAATAAACAGGAGTTCATACTTAGCTCAAGATTAAGATCGAGTTACGTAGGTCATCGTATGAAATTG

Protein sequence

MKILEAKAILEGLRSYVISTEEERVNTLLSFVVESDSSKVINALNQEVEDHSKISLMIKGISDLLPSANVSSLSKCSRMENRGAQTLKRATTQVGANSILQDYVPSYPPGLILEMGGLLSQRTRVTLTHTDLRIIPNKQEFILSSRLRSSYVGHRMKL

Homology

[Close]

BLAST of Spg020687 vs. NCBI nr
Match: TYK16320.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-07
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 103 YVPSYPPGLILEMGGLLSQRTRVTLTHTDLRIIPNKQEFILSSRLRSSYVGHRM 157
           YVPSYP  L  EMGGLL QR R  LT+ DLRI+ N+Q+FI+S  LRSSY+G  +
Sbjct: 819 YVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYLGEEI 872

[Close]

BLAST of Spg020687 vs. ExPASy TrEMBL
Match: A0A5D3CY86 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001000 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.0e-08
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 103 YVPSYPPGLILEMGGLLSQRTRVTLTHTDLRIIPNKQEFILSSRLRSSYVGHRM 157
           YVPSYP  L  EMGGLL QR R  LT+ DLRI+ N+Q+FI+S  LRSSY+G  +
Sbjct: 819 YVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYLGEEI 872

The following BLAST results are available for this feature:

BLAST of Spg020687 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16320.1	1.7e-07	61.11	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]

BLAST of Spg020687 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg020687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CY86	8.0e-08	61.11	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]

BLAST of Spg020687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 27..87 e-value: 6.3E-7 score: 29.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020687.1	Spg020687.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity