Spg020686 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020686
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold10: 29126995 .. 29138625 (-)
RNA-Seq Expression	Spg020686
Synteny	Spg020686

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTGCAATCGGCCCATGGTAAATGCTGATGTGCTGTCCAACAGTTAGACCATTGGATTTTTCCTGCGTGACACGTGGTAGCATCAGATCTCTCATGCAATTTACCTGCCCACGGGAAATTCAAATCCAAATGGAAAAAATATTTAATTTACAACCAATCCCCTTTATATTCAGATGAAATATTTGATCTTGCCAACAGATTGCCGAAACAAACCACTGAGCAAAGATTTTCTTCTAGAAGAATCTTTGATACGGAAGATTTCAAATTTAAATTTAAACCGCTTAAATCAAATCTTCATTTTTATTTAAAACCGAATAATTTAGGAAAAATATTTATTAAAACTTAAATCTAAACAGAAATAATAACTAAAAATACAAACTAAAATTAAATCTAATCTAACTAATCCGATTAAATCAATTAAACAAAATTAACGAAAAATACAAATAAATAAACTGAAAATAAAATCTACGAAAATATTCCAACGAATTAAATTTAATCAGATAAAATTGAAATCAATAAAATCCAATTTAAAGTAATTCAAATCAGAATCAAATAAAATCATCGAAAAAATCAAATCGCAACAAAACCTGGGAGCTAAAAAATATTGCCATACGAAATGCTCCCGCAAAACTCATGCTCTCTCATTCATCAACCAACCTTAGGGAAGGATACTTCGACTGGAATTCCTCACCCCAATAATGTTTCACTCGCTGTCCATTAACCTTGAACACTCTCCCATTCTTTTCATCTCGCAAAGTAATTCCTCACCCCAATAATGTTTCACTCGCTGAACATCATACTCTCGTCCCGTTACGTCTTGGGGTCTTGGATGAACTGCATGTGATATCCGTCTTCATCAATCTCGGTTTAAGTTCATTTCCTCCTCGCCCCTTCTTTTGGATCTACGACTGTGGGTAATTTTTTTTAGGATTTCCTTTTTTTTTTCCATTCGGTCATCTGGTTTTATCTTCTCGTCCGTTTTTGTTCTTCGGTTTAATCTTTTTGTTGTTTCCTTTTTTTCGTTTTTACAGAAACCCATCCCATGCCGCTTCAACTTGTCGTGGGTGTCGACGATATGAATCGGTATCCGCCTGGTAGATTGGGGCACGGTGAGGGGTGGGACGAAGGTAAGGGGTAACCGGCCAATGATGTATTGGAGCAAGCAACCTGAAAACATGGTTTTTTTTATCTGCCTTGTTGTTGTAGTTTGTTCCTCTTCTGATTTACCGTTTGTTAATTGGTTTTGTTTGTAGGTTGGTTTTTTCTTTTCTTGTGGACTCCGATTGTTGTCCATAGTGTTGTGTAAATTTGACACCCCCCCCCCATTCGTATTTTGTGTTCATGCTATTGTGTAAATTTGATTCCTCTCATGACCCCCCCCCCCATTCGTATTTTGTGTTCATGCTATTGTGTAAATTTGATTCCTCTCATGACCCCCCCCCAATTCGTATTATGTGTTCATGCTCACTGGTCAGTACATTTGTTTTTCTATTCCTCTTTCAGTTGTTCATGGTCACTATTCCGTGTTGCATTCTTGTTTTTTCCTTGTCGTTTTTTTTTCCTGATCTGTTTCCATCTTATTTATCCTGTTCTACCCACATAATTTGAGTTAAATTTGTTTGCTGGCCACATTATTTGATTTGATTTTGTATTCTTTTGCCCACAATATTTGATTCAAGTTTGTGTTCTTCATTTACATGTCAGTGTTCAATAGATTGTGTTTTTTCCACTTCTTTCTTATTTCATACTTGTTTGTCCGTTACTTTTTGGCCATATTTGTTTGACTTCCATGGTCTTTTTTGTTCCTTCATGTCAATTTCATGTTGTTTTCCAAATTTCGAAATGTTTTCTGCATTGAACAAAACCATGGTTGAAAACAAAAATCCAACTGAGGCCGGTTACATTTTTTTTCAGTATTAAAATATTTTTTGGTTCTTAGTTTCTGACATTTGGTTACTTTCTGACTAATCACATTGTGGTTGAACCAATGTTTTGTAAATCACGTTTATTTGTGATGGGAAAGGTCTGATGTTGCATTTATTTCACCTTACTCACCATATCTTTCCATTTACAATATTAGAGTTGGTTGCATTTATGTTGACTTCATAAATGCAACCAACCGTCTGAGTTAATAAATAAAGGCAGCTGGCATTTATATTTTGTGGTTTAATTATGCAACCACTGCTTGTATTTTCATTCAACCACCTCCTTCAATCCTTTCCTTATTTAAAGAAGATCATCCTTTCCTAATTTCTTTGAGGAAAGTCTCCACTGCATTGGATAGTCCCTCTAAACGGTGAGTCATTTTCCAACTTCCATACTTTTATTTATTTGTGTTGCTATGTATACCAAGTTCTTCGTTACACTAACTACAATCTCTTCTTATCTTCTGCCCCTAAAGACAAACCTAAACCCGATCTCCACCTTCTTCTATTTCGTTTCACGCATCCCGATCTCATATAACGATAAGTTTTCGTTCTCTTCCTTCGTTCACTTTGTTTGTACTTGGTCTACATTCATACGGTCATATCTTAATAACTTTCTCCCTTTATGTCATATGCTTGCAGGTTTGCTCCAAAAAACACCGTTATATTCGAGGTTCGTTCGTTCAATTTAAATACCCTTATACTGTTCTGTAAATTGTGTATATTCTTTGTTGTGGACATTACGAACTGCTTCATTTGTATTACTGAATTTCGGACAGTTCGTTGCTTTGTTTTGTTTTTTCACGTTGTATTGTTCATTGCGTTAGTATTTTAGCTTATGTAATGATATCATTTTCTGTATAAATGAATTTTTTCTTATGAAATGTTGACGAATATTTTAAATAAATGGAAGTAAAAAATATGCCACGTTGTTTGAATGAATGTTTAGTTGCTAAAATTCATCATGGTTTTACTATCATCTTTTATTTCGAATGTTGACAAAAAGATGCAGTAGCAATTTTGTAATGACATGTACACTAAAATGTTGAAACAAAAAAAAAAAAAAAAGAAATTTGAAGTTTACTATAACACAAGTTAAATTTAGTATCAATTATGGAAAAATGGTTTCGATAATATGTACATTTGCTTTAAAGAAGTTAAAATTTGTTTGACTCCCTCTTGCTTGCTTCTGGAATTTTAGTTTTAAAAAAGTTGAGACCTCACTATAATATGAAAAATGTTCGGTTTTTTTTTTATCTACAACACTTTGCTGAAAAATTAATTTTAAGTGGATAAATTATATTAAAAGAAATTTAATTTGGATTTCAGTTTTCATTCAAGTTTTTCAACACACTGATTAATATCATATTTGTACTAACAAGTGAAAAAGGAATGAAGTTAAAAATTAACGACATTCATGTAATTAGAATGAATAAAAGTGATTTCAGAAAAAAAATAAATAAACAATATACATCATGTTAAAGTAATCTGTTTATTTTTTTTTTTACAAAATTGAAGTCATGAAAATAACATTTTCATATGGTTTCAAAAAAAGCCACTGAATTAACTTTTTAGTACATTTTTTTCTTCCGATTAGAGTTATTTTGTTCTAACTTCAATGACTTAAGAAGTTCAACATCCAAGTCAAATGAATTTTGTACTTTCCATTAGAGTTAATAATAACAAAATTAAGGTAAAACAGATTTCCTAATTTGTGTTAGAGGTAAGAAGTGCAAATTTGAAGTAAAATACATTCCCTAATTCCAATTTGAGTTAGAGAAGCTTAAAATTGATGTAATCAAAATATCATGTTTTGTCATTGAAGTACATTTCATATTATTATCTTTATTCAAGGGTTTTTTTATATGATTTTATTTTCATTTTTTCATTAGTTTAATTGCACAAAGAATTTCAAAAAACAAGTATTGAAAATGTTCCTATTATATATATGCTCAATTTATATCTTATCACATCCTTTGATTTTCATTAAGCTTACTTTACTTTAATTGTACTTTGATACTTGTCTGTATTATGTGAGCTTAATAATCTATCTTAGTTTAGTCTACGGGTTATTGTGCATTCCGAACATATACTTCTAAACCCCAAAAGATAGATTCAATTATTTGGTAAAATAATACACAATTGTTTTGTGACCAAAGAACAAATTATGTAAATTACCTTTTCACCCAAAACCCCAAATCATAAACCCTAAACCACTCAACCTTAAACCCTAAACCCTAAACCACTTAACCACTAAACCGTAAACCAGTAAACCCTAAACCATAAACAACTTAAACCCTAAACCCTTAACCACTTAACCACTAAACCCACTTAACCCCTGAACCGTAAACCACTTAAACACTAAACCACTAAACCCTAAACCACTTAACCACTAAACTCACTTAAGCACTGAACCCTAAACCACTTAACCACTAGACCCTAAAGCACTAAACCTTAAACCCTAACTCGTAAACAAGTTAACCACTAAACCCTAAACCGTAGACCACTAAATCACGAACCCCAAACTTACCGAACCCTAAAACCTAAACACTAAACCCTAAACCCTAAAGATTAAACCCTAAAACCCTAAACCGTTGACCCTAAAACCGGAAACCATAAACACTAAAACCATTAAGACTAAAATCTGGATTCTTGTAATCATAAAACGAAACAACACGCTTTAAATATAGACGATAGGTGACTGCTTGACTTGGTACATTTTGAATAATAGGACTATGGGGGCAACAAAATTCTATGTCGTGTTTGTTGGTCGCAACCCAGGAATTTACACCTCCTGGGTTGAATGCCACAGACAAGCTAACCAGTTTAAGGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTACGTTGCGGACACCAGTGGCGCACCAAACCTCGTTGACCAACATGAAGTGCGCACCAAACCTTACTGTAGGGGCTATGGAACTGTAGGAAACTGTTACAGTATTAGTCAGATGTTTGTAGGGTTCCTGTTCGGAATAATTGTAACTTACGTCATCGTTCACTATCCTTAGAATGCTAGCGTATCCCCTTATAAGATGAGTAAGGCGTTGAACTAAATAAAAGTCGGTTTATGTTTTGTCCAGGCTGAAGTTGTACAGTTCATAATGGATTCCATAACCCCACATGAACTTGTGTCTGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAAATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGTTGTCGAGAAAGCACCAAGATGGATAGGAGATGTTTTGCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACAGAAATCGTAGACGTGGAAGAGATGGTCGCGATGTCCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCATTTCAACGCGACTTTGAATGCCGTACTACGATTGTACAATGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGGTATGGACACTATACGTTTGTACACATCGTTAAGTTTTTACAACGTCCTTCTGACATTTGTAATGTCGTGTGGAAACAGAATTGTTTAGGTGCATTGGACGGTACGTACGTAAAGGTCCATGTTAGTGCAACTGATCGACCAAGGTATAGGACGCGGAAGGGTGAGATTTCAACAAATGTTTTGGGCGTTGTGTCGCCAAAAGGTGAATTCATTTTTGTTATGCCGGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTTAGAGATGCTATATCACGCCCCAATGGACTAATAGTGCCGAAGGGTATGGAACGAAGTATGAATGTAAAATAGGATCGCTTGAGTCAGCCTTAGGTATTAACCATCTTTTATGAACAGGTTACTACTACCTCTGTGATCCCGGGTACCGAAATGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGAGAGGCAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGCACGTAATGTTATCGAGAGAGCATTCGGTGCTCTGAAAGGACGGTGGGTGATACTTCGGGGGAAGTCCTACTACCCTGCTCGGACCCAGTGTCGAATCATAACAGCGTGCTGTTTACTCCACAACCTTATCACCCGGGAGATGGATCTGGATGTTGGATTGGATGAAGGTGATGTTGGTCGATCTAAACCCGTACCTCTAGATGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGATGCAAAAGCGAGATGACCTAGCGAACAGGATGTTCAACGCGTGGGGGCAACATAATCCCTGATCCAGTTTCGACATACGACTATCTGCTATGTTGTAATTCTAATAGTTCTTACATTTATTCGGCCGTACATTTCTTCTACAATCTAAACGATCTATTCAATGTAACTCAGTTAGATTTATGGAAAACAATCTTTAATGTTGTTATTCTACATTATGTTTCTAACTTTTCGTCTGTGATTACTTCATAACTAACACTTCAACATTATGTCGCTGATAGTGTGAATTGATCAGAATACGTACTTACGAAATCTAATGACGCAATTGTCTATCCATGTAGACTAATGGCAGGTGCAGATAAACAAACGAAACACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGCCCGGATACCTACCCCGACTGAAGCAGATGATAAAAGATAAAATGGTGACCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTACAGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCTGGGCTGCAGTGGATTCGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAAGGAGGTATATGATGCATGGGTGAATTTACGATCACTATTCATTAATTGATGTAACTCATGTACACTATCGTTGCTAAAACACTCTTCAATACATGCAGTCACACTCGAGCGCAAAGGGGCTGCTGAACAAGCCATTTCCTCCTCCTAAAATTTAATTTTATTTTGAATTTTCATAATACAAATGAAATTGAATTTTAGTTTATTTAATTCAATAATTAATAATCTGAAAATTTAAATCTAAATATTGAATTTTGAATTTTAAATTAATTAAAAGCTAATTTAAAATAATTATTAATTATTTATTAATTAAATAATCAAATATATAATTAATTTAATATCTAATATTAAATTAATATTTTGCTACTAATCCCAATCATTTCTGAAATGTTATTTTCCAACCATGAATCCCTATTCATGTGCTCGATATTTAAATCATATTTAAATATATTAAATTCTCTCAAGGTTAGGTTGAACAAAAACCCGACGTGTCGGTAGTATCCAATATGACCGACCATTTCCCTAAATTGAATTTGAACTTATTCTAATTCATTCCATCATATTGTTCCAAATTTTATTCCTTAAGCTAGCAAGGGGACCTAATGGACCTACAAATCAAGGGCTCCAACGGTTCGAGGTTTCACCGGTTAAACTCTTTTAACATAGTTAACCAACATCTGTTAACTACCGGGTCACTCCACTATAGCCTAGTAATTGAACTCCACTCACTGTAGATATATTTCCATCCACTTGAGATAACCAGGATTAGTAAGTCAATCCTTCACAGGTCGTTCGTAACTATAGCTGGTCAAAAGGTCTGTTTTACCCCTATAACACTTCTTGATTCCTTAAGTCCACTGGTCCTCTAATGAACAATTTGTTTATGGTCCTACCACTAAACATAGTCCCTCTCGGGCCAATGAGTGGGTGAGGCCCCTTGTTCAAGCCTCGGAGTCAGCACTTAAGGGAACAACCTTTCTACTATCCCTGATTCGGGTAGGAGTGAATTCCATCTTGCAATACTATGTCCCCAGCTATTCATCCAATCTTATCCCCCAAAATGGTAGGCTTATTGAGCGGCACAGTTTGGCCACTCTCACCCATGCAGATCAAAGAATAATCCCAAACAAATAGGAGTTCATAGTAAGTTCAGGATTAAGATCGAGTTACCTAGGTCATCACATGAAATAGTCAGTCTTAACAGTAAACGACGTTATAAAGTAAGAGTGACTCATTTCTTGGTCTGGTCTTGTGTAAACTTCTCTGAAAAATGATGCCCCTACTCGCATGTCTCTACATGAACGATCCAGGATCACATCGTTTGCCTCGTTCGCAAAGTAGGCCGCATCCATAGTGTTACCAAGATAAGGTACCCAACATTATCCCTATACTATAGACCATTTAGGTTATATACTAGAAGTTTATCCTTGTCCATATCCATGATATAGTTCGAGTATTTCATACTATAACCATGGATGTTTATCTTATTGGATTTAAAGTATATAAACAAACAATTCACTGAATAACATCTTTATTGCAAAAAGGTTACAAACTTTGAGTTTTAGGACATAAAACCCAACACAAATAATCCCATACTTATTGCAGATGAAAGGAATAGAGCCATCAAGGATTATGCAGCCGCAACTTTTTACAATCTCAATACAGGAATTGTTGAGCCATTCATTGATGCCAATCATTTTGAGCTCAAGTCAATCATGTTTCAAATGCTTCAAACGATAGGCCAATTTTCAGGACTTCCTAGTGAAGATCCTCACAAACGCATGAAACAATTCTTGAGAATAAGCAACTCGTTCAATTTCAATGGAGTATCCAATGAAATATTGCGTTTGAAACTTTTTCCATTTTCTTTACAGGGCATTGCAGAAGCATGGATAGATTCTTTTCCATCGGATAACATCACCACATGGGATGATCTTGCTGAAAAGTTTCTCTTCAAATATTTTCCGCCCACAAAGAATGCACAAATCCGAGGGGAAATTATCACGTTTAAACAAGGACCACAAGAAAGGGTAGACACTGCATGGGAATGCTTCAAGAAGTTGATAAGGAAATGTCCACACCAGGGCTTGCCCGCTTGTCTTCTTGTAGAGCATTTCTACAATGGATTGACTCAAGCTTCCAAAGCGGTAGTCAATGCACCAACTAATGGTTCATTGCTTAAAAAGACTTTCAATGAAGCAAATGAAATTCTGGATGCAATTATTGTAAATCACAGTCAATGGGGAGAAGAAGAAACACCTTCGAGGAGCAATGTCAAGGTCCAAGAAGTCAACCATCTCGAGACACTCTCAGAACAGATGTTAACTATGAACGATATGCTTATGAATCTGACCTTAAGAAATCAAGTTCAAGTTGCAGCCGTGAGCAGAGTTTCAACCCCCATGTGCACTACTTGAATTAAGAGCACTCATTTGAAGATTCTCTTCAAAATCCAACTTCAGTTTGTTTTGTAGGTGCGCAAAATAGAATAAACCCTTATTCCAACACATATAATTTAGGATGGAGACAACACCCTAACTTATCTTCGAGAGGAAAAAATGAAAGCACATCAAATGCAGCCCCATTTAAGCAGGGAGGACAAACCAGATTTAATAGTTAGACTCAAATGAAGATTGTACAACCTTTGCAGTCGCAATTGCAGCAGTCGATGCAAGGGCAGCCCCAATCCACAACAAACTTTGAGAATCTTATGAGGGAACTAATGACTAAGGATGATGTTGTAATTCAAAGTCAAACAGCTTCCTTAAAGAGTCTTGAATCTCAGATTGGGCAGTTGGCTAAGGAAATGAGGAACAAACCAATAGGGACCCTACCAAGCAATACAAAGAATCCTAAAAGAAAACGCCTTGGCAAGGGTAAGGCTGATAGCATGAAATAATGCTATCTTTTTAGCCCTAAATTTAGGCTTATTCCATGCTTAATTTGGTACTTAATTGCATTAATTTATTGATTTCAGAACTCTTAGTCTCAAAAGGAGCAACTGATGCAATTTTTTGAAATTGACGCTAATCGGGCCCAATTTGGAGATTATTTGATGAGTTAGAAGCCTGGCACATGGGAAGCTTGATGTTGTAGAAGTCTGGCGCATGGAAAGTTTGATGTTGTAGAAGTCTAGCGCATGGGAAGCATGATGAGCTAGAGCTTTTGAGCTAGAGCATTGGTATTGAGTGGGGAGCAAGTTTATGTTGAGTAGTGAGCAAGTTTCCATCCAAATGGTGATACTTTGGCTCCAAGTATGATCCTTTGGCTTCAAGTATTCCCCTTTGACTCCAAGTATTCCCCTTTGGCTCCAAGTAAGAGGAGATTATAAATAGAGGGGAGGTGAAAGGAGAAAATCAATCCAAGGATCCAAGGATCCAAGGCATTACTACATTTTTATGTTTTATTACATTGTGTGCTTTATATTAGAGCTTGAAGTAATTTCTCTTCATCAAGGCTTAGCCTAGGCGCCCATGCGGCGATGAACTTTTATGTATGCGTTATATTTTGAATGAATGAAGTTGATGTTTTCTACTTAGATGCTTTAATATTTTCATTACTAATGCCCGCCTGGCCAGCCGGTTGCAGTAGCATCATGATAAACCCAGAAAGGGTAACGCATGTGGAAACGTCTAAGTAGAGCAAGATAGTGCATTGCATGTAGTCTAGGTTGCGTTAGAGTTAGCTCTGCCGCAAGAGATAATTCATGAATGTGTTTAGACTGTTTTAGGGGTAACTCAGTCACTTGCAAGTAAGTATGAGAACTGCGTTAATGCATGAACTAGGTGAACAGAAACGTTCTTAGTCCTATGCCAAATGCATGAGTAATACCGGAAGGGAATCACATGTTTATTTCTCACTTAAGCATCAATAGCATCTCATTCATAGTATGCGCTACAGGATAGTTCATTAACACATGTGGTTGATGCGGTGAAAGCCTTGATTGCTCATCTCTCACTGTTTTCCCTTTAATGCATAGGTTCTATTTTTATAATCGCATGTTTATTTCACCGCATCTCAATCTCTTTTGTAATTCCTAACGCCCATGCATTAGAATAGGATTTAAGGAAAGACACTTTTACTACTCGCCCCTTCCCTGTGGATCTGACCCTAGAATACTCCAGGTATTACTTGGTAGTGGATAATTTATACTTGGATTAATGCACACCAACGACATATTCTTTATTTAATTCAATACAATTAGAAGTGGTTATAGTTCGAACCAAAGGCCTCCATTGATCCCAAGTAATTTGGAATTGAGATTGTGTAGGTATGTATGATAGTTTGTGGTTATTTTTGTTTTCTTTCTGTTTTGTATCTATTTCTTGTTTTGCTTTCTTTTCTTTTATCTTGTTAAAATAAAAAATATTTCAAAAAGATTGAGCAAAAATGTTTAGAGTGGTGGAAAGGTAAGAAAATCAAGTTTTGTAAACCAAGACTCGCATTTTCATGATTTGCCAAAATTTTATCTAAATTCTTCTTCAAATTTTGTACGCTTAACCCGTGTGGATATTCTAATCATTTTGAATAAGTGTGCAGAAGATAGGTAAAGGAGCAGGAAAAAGCGATTGGGAAAGGGAAGGATATGCAAAGCAAATGCGGTCGAAAAATCTGCCTTGTGTTGAATAA

mRNA sequence

ATGGAAGTGCAATCGGCCCATGAAACCCATCCCATGCCGCTTCAACTTGTCGTGGGTGTCGACGATATGAATCGGTATCCGCCTGGTAGATTGGGGCACGGTGAGGGGTGGGACGAAGGTAAGGGGACTATGGGGGCAACAAAATTCTATGTCGTGTTTGTTGGTCGCAACCCAGGAATTTACACCTCCTGGGTTGAATGCCACAGACAAGCTAACCAGTTTAAGGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTACGTTGCGGACACCAGTGGCGCACCAAACCTCGTTGACCAACATGAAGTGCGCACCAAACCTTACTGTAGGGGCTATGGAACTGCTGAAGTTGTACAGTTCATAATGGATTCCATAACCCCACATGAACTTGTGTCTGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAAATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGTTGTCGAGAAAGCACCAAGATGGATAGGAGATGTTTTGCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACAGAAATCGTAGACGTGGAAGAGATGGTCGCGATGTCCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCATTTCAACGCGACTTTGAATGCCGTACTACGATTGTACAATGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGACTAATGGCAGGTGCAGATAAACAAACGAAACACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGCCCGGATACCTACCCCGACTGAAGCAGATGATAAAAGATAAAATGGTGACCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTACAGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCTGGGCTGCAGTGGATTCGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAAGGAGGATCACATCGTTTGCCTCGTTCGCAAAGTAGGCCGCATCCATAGTGTTACCAAGATAAGAATAGGATTTAAGGAAAGACACTTTTACTACTCGCCCCTTCCCTGTGGATCTGACCCTAGAATACTCCAGAAGATAGGTAAAGGAGCAGGAAAAAGCGATTGGGAAAGGGAAGGATATGCAAAGCAAATGCGGTCGAAAAATCTGCCTTGTGTTGAATAA

Coding sequence (CDS)

ATGGAAGTGCAATCGGCCCATGAAACCCATCCCATGCCGCTTCAACTTGTCGTGGGTGTCGACGATATGAATCGGTATCCGCCTGGTAGATTGGGGCACGGTGAGGGGTGGGACGAAGGTAAGGGGACTATGGGGGCAACAAAATTCTATGTCGTGTTTGTTGGTCGCAACCCAGGAATTTACACCTCCTGGGTTGAATGCCACAGACAAGCTAACCAGTTTAAGGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTACGTTGCGGACACCAGTGGCGCACCAAACCTCGTTGACCAACATGAAGTGCGCACCAAACCTTACTGTAGGGGCTATGGAACTGCTGAAGTTGTACAGTTCATAATGGATTCCATAACCCCACATGAACTTGTGTCTGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAAATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGTTGTCGAGAAAGCACCAAGATGGATAGGAGATGTTTTGCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACAGAAATCGTAGACGTGGAAGAGATGGTCGCGATGTCCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCATTTCAACGCGACTTTGAATGCCGTACTACGATTGTACAATGTTCTACTTAAGAAACCTGAACCGATCACGGCTTCTTGCCAAGATGGGAGACTAATGGCAGGTGCAGATAAACAAACGAAACACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGCCCGGATACCTACCCCGACTGAAGCAGATGATAAAAGATAAAATGGTGACCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTACAGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCTGGGCTGCAGTGGATTCGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAAGGAGGATCACATCGTTTGCCTCGTTCGCAAAGTAGGCCGCATCCATAGTGTTACCAAGATAAGAATAGGATTTAAGGAAAGACACTTTTACTACTCGCCCCTTCCCTGTGGATCTGACCCTAGAATACTCCAGAAGATAGGTAAAGGAGCAGGAAAAAGCGATTGGGAAAGGGAAGGATATGCAAAGCAAATGCGGTCGAAAAATCTGCCTTGTGTTGAATAA

Protein sequence

MEVQSAHETHPMPLQLVVGVDDMNRYPPGRLGHGEGWDEGKGTMGATKFYVVFVGRNPGIYTSWVECHRQANQFKGALHKSYPTFQEAEYAFRHYVADTSGAPNLVDQHEVRTKPYCRGYGTAEVVQFIMDSITPHELVSVLSIMADSQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTKMDRRCFAILCSLLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLRLYNVLLKKPEPITASCQDGRLMAGADKQTKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRPGYLPRLKQMIKDKMVTCTIESTSVIDCKVQSLKRQYSAISEMLGLGCSGFGWNDEFKCIQAEKEDHIVCLVRKVGRIHSVTKIRIGFKERHFYYSPLPCGSDPRILQKIGKGAGKSDWEREGYAKQMRSKNLPCVE

Homology

[Close]

BLAST of Spg020686 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 1.7e-55
Identity = 148/441 (33.56%), Postives = 187/441 (42.40%), Query Frame = 0


Query: 160 MNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTKMDRRCFAILCSLLRTTSGLVG 219
           MNN+ R+ +  P  RH+IR+LA FR+IHESDL CR+ST+MDRR FAILC LLR  +GL  
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 220 TEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLRLYNVLLKKPE 279
           TEIVDVEEMVAM LHI AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY  L+K+P 
Sbjct: 61  TEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 280 PITASCQDGRL------------------------------------------------- 339
           P+T++C D R                                                  
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180

Query: 340 ------------------------------------------------------------ 397
                                                                       
Sbjct: 181 YVLAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240

[Close]

BLAST of Spg020686 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.3 bits (578), Expect = 2.8e-55
Identity = 152/449 (33.85%), Postives = 191/449 (42.54%), Query Frame = 0


Query: 136 HELVSVLSIMADSQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRE 195
           HEL S+++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 196 STKMDRRCFAILCSLLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGET 255
           ST+MDRRCFAILC LLRT +GL  TE+VDVEEMVAM LHI+AHDVKNRVI+R+F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 256 VSRHFNATLNAVLRLYNVLLKKPEPITASCQDGR-------------------------- 315
           +SRHFN  L AV+RL++ LLKKP+P+   C D R                          
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRA 183

Query: 316 ------------------------------------------------------------ 375
                                                                       
Sbjct: 184 RYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLV 243

Query: 376 ------------------------------------------------------------ 397
                                                                       
Sbjct: 244 DAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRW 303

[Close]

BLAST of Spg020686 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 2.1e-50
Identity = 103/191 (53.93%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 210 LLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLR 269
           +LRT  GL  T+ VDVEEMV + LHI+AHDVKNRV RR FARSGETVSRHFN  LN VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 270 LYNVLLKKPEPITASCQDGR-----LMAGADKQTKHIWTRQEEARLVESLVELVHEGGWR 329
           L+ +LLK+P+ +T SC   +     + +   K TKH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 330 GDNGTFRPGYLPRLKQMIKDKMVTCTIESTSVIDCKVQSLKRQYSAISEMLGLGCSGFGW 389
            DNGTF+PGYL ++++++K+K++   I+ T  ++  V+ LK+QY+ I+EM+G  CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 390 NDEFKCIQAEK 396
           N E KCI+AEK
Sbjct: 181 NKERKCIEAEK 191

[Close]

BLAST of Spg020686 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 2.1e-50
Identity = 103/191 (53.93%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 210 LLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLR 269
           +LRT  GL  T+ VDVEEMV + LHI+AHDVKNRV RR FARSGETVSRHFN  LN VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 270 LYNVLLKKPEPITASCQDGR-----LMAGADKQTKHIWTRQEEARLVESLVELVHEGGWR 329
           L+ +LLK+P+ +T SC   +     + +   K TKH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 330 GDNGTFRPGYLPRLKQMIKDKMVTCTIESTSVIDCKVQSLKRQYSAISEMLGLGCSGFGW 389
            DNGTF+PGYL ++++++K+K++   I+ T  ++  V+ LK+QY+ I+EM+G  CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 390 NDEFKCIQAEK 396
           N E KCI+AEK
Sbjct: 181 NKERKCIEAEK 191

[Close]

BLAST of Spg020686 vs. NCBI nr
Match: TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 4.1e-46
Identity = 124/330 (37.58%), Postives = 162/330 (49.09%), Query Frame = 0


Query: 160 MNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTKMDRRCFAILCSLLRTTSGLVG 219
           MN+  RI +      H+IRQLA FR IHES+L C +ST+MDR+ F IL  LLR  SGL  
Sbjct: 1   MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60

Query: 220 TEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLRLYNVLLKKPE 279
           TEIVDVEEMVA  LH++AHDVKNR+I+R+F RS ETVSR+FN  L AV+R+Y   +++  
Sbjct: 61  TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120

Query: 280 PITASCQDGR-------------------------------------------------- 339
             T +C D R                                                  
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180

Query: 340 -LMAG-----------ADKQTKHIWTRQEEARLVESLVELV------------------- 397
            ++AG            D   +    R     L  S  ++V                   
Sbjct: 181 YVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGG 240

[Close]

BLAST of Spg020686 vs. ExPASy Swiss-Prot
Match: Q9KEI9 (Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rnhA PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-08
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 44 MGATKFYVVFVGRNPGIYTSWVECHRQANQFKGALHKSYPTFQEAEYAFR 94
          M  +K+YVV+ GR PGIYTSW  C  Q   + GA  KSYP+ +EAE AFR
Sbjct: 1  MAKSKYYVVWNGRKPGIYTSWSACEAQVKGYTGAKFKSYPSKEEAEAAFR 50

[Close]

BLAST of Spg020686 vs. ExPASy Swiss-Prot
Match: Q07762 (Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 8.1e-05
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 49  FYVVFVGRNPGIYTSWVECHRQANQFKGALHKSYPTFQEA 89
           FYVV VGR  GIY++W +C  Q   F GA++KS+ T  EA
Sbjct: 156 FYVVAVGRQRGIYSTWDQCSEQVKGFSGAVYKSFRTLSEA 195

[Close]

BLAST of Spg020686 vs. ExPASy Swiss-Prot
Match: O70338 (Ribonuclease H1 OS=Mus musculus OX=10090 GN=Rnaseh1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 6.9e-04
Identity = 24/74 (32.43%), Postives = 36/74 (48.65%), Query Frame = 0


Query: 41  KGTMGATKFYVVFVGRNPGIYTSWVECHRQANQFKGALHKSYPTFQEAEYAFRHYVADTS 100
           +G  G   FY V  GR  G++ SW EC  Q ++F  A  K + T  EA +AF    +   
Sbjct: 20  RGICGLGMFYAVRRGRRTGVFLSWSECKAQVDRFPAARFKKFATEDEA-WAFVRSSSSPD 79

Query: 101 GAPNLVDQHEVRTK 115
           G+      HE +++
Sbjct: 80  GSKGQESAHEQKSQ 92

[Close]

BLAST of Spg020686 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.0e-56
Identity = 148/441 (33.56%), Postives = 187/441 (42.40%), Query Frame = 0


Query: 160 MNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTKMDRRCFAILCSLLRTTSGLVG 219
           MNN+ R+ +  P  RH+IR+LA FR+IHESDL CR+ST+MDRR FAILC LLR  +GL  
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 220 TEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLRLYNVLLKKPE 279
           TEIVDVEEMVAM LHI AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY  L+K+P 
Sbjct: 61  TEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 280 PITASCQDGRL------------------------------------------------- 339
           P+T++C D R                                                  
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180

Query: 340 ------------------------------------------------------------ 397
                                                                       
Sbjct: 181 YVLAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240

[Close]

BLAST of Spg020686 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-55
Identity = 152/449 (33.85%), Postives = 191/449 (42.54%), Query Frame = 0


Query: 136 HELVSVLSIMADSQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRE 195
           HEL S+++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 196 STKMDRRCFAILCSLLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGET 255
           ST+MDRRCFAILC LLRT +GL  TE+VDVEEMVAM LHI+AHDVKNRVI+R+F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 256 VSRHFNATLNAVLRLYNVLLKKPEPITASCQDGR-------------------------- 315
           +SRHFN  L AV+RL++ LLKKP+P+   C D R                          
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRA 183

Query: 316 ------------------------------------------------------------ 375
                                                                       
Sbjct: 184 RYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLV 243

Query: 376 ------------------------------------------------------------ 397
                                                                       
Sbjct: 244 DAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRW 303

[Close]

BLAST of Spg020686 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.0e-50
Identity = 103/191 (53.93%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 210 LLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLR 269
           +LRT  GL  T+ VDVEEMV + LHI+AHDVKNRV RR FARSGETVSRHFN  LN VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 270 LYNVLLKKPEPITASCQDGR-----LMAGADKQTKHIWTRQEEARLVESLVELVHEGGWR 329
           L+ +LLK+P+ +T SC   +     + +   K TKH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 330 GDNGTFRPGYLPRLKQMIKDKMVTCTIESTSVIDCKVQSLKRQYSAISEMLGLGCSGFGW 389
            DNGTF+PGYL ++++++K+K++   I+ T  ++  V+ LK+QY+ I+EM+G  CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 390 NDEFKCIQAEK 396
           N E KCI+AEK
Sbjct: 181 NKERKCIEAEK 191

[Close]

BLAST of Spg020686 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.0e-50
Identity = 103/191 (53.93%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 210 LLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLR 269
           +LRT  GL  T+ VDVEEMV + LHI+AHDVKNRV RR FARSGETVSRHFN  LN VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 270 LYNVLLKKPEPITASCQDGR-----LMAGADKQTKHIWTRQEEARLVESLVELVHEGGWR 329
           L+ +LLK+P+ +T SC   +     + +   K TKH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 330 GDNGTFRPGYLPRLKQMIKDKMVTCTIESTSVIDCKVQSLKRQYSAISEMLGLGCSGFGW 389
            DNGTF+PGYL ++++++K+K++   I+ T  ++  V+ LK+QY+ I+EM+G  CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 390 NDEFKCIQAEK 396
           N E KCI+AEK
Sbjct: 181 NKERKCIEAEK 191

[Close]

BLAST of Spg020686 vs. ExPASy TrEMBL
Match: A0A5D3BZA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00580 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-46
Identity = 124/330 (37.58%), Postives = 162/330 (49.09%), Query Frame = 0


Query: 160 MNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTKMDRRCFAILCSLLRTTSGLVG 219
           MN+  RI +      H+IRQLA FR IHES+L C +ST+MDR+ F IL  LLR  SGL  
Sbjct: 1   MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60

Query: 220 TEIVDVEEMVAMSLHIIAHDVKNRVIRRQFARSGETVSRHFNATLNAVLRLYNVLLKKPE 279
           TEIVDVEEMVA  LH++AHDVKNR+I+R+F RS ETVSR+FN  L AV+R+Y   +++  
Sbjct: 61  TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120

Query: 280 PITASCQDGR-------------------------------------------------- 339
             T +C D R                                                  
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180

Query: 340 -LMAG-----------ADKQTKHIWTRQEEARLVESLVELV------------------- 397
            ++AG            D   +    R     L  S  ++V                   
Sbjct: 181 YVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGG 240

[Close]

BLAST of Spg020686 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 6.0e-11
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 183 FRLIHESDLCCRESTKMDRRCFAILCSLLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKN 242
           +++++  +  C E+ +MD+  F  LC LL+T   L  T  + +E  +A+ L II H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 243 RVIRRQFARSGETVSRHFNATLNAVLRL 271
           R ++  F  SGET+SRHFN  LNAV+ +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAI 119

[Close]

BLAST of Spg020686 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 3.2e-04
Identity = 26/85 (30.59%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 186 IHESDLCCRESTKMDRRCFAILCSLLRTTSGLVGTEIVDVEEMVAMSLHIIAHDVKNRVI 245
           I+ +++ C+   +M    F  LC +L    GL  +  + ++E VA+ L I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 246 RRQFARSGETVSRHFNATLNAVLRL 271
             +F  + ET+ R F+  L A+ RL
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERL 101

The following BLAST results are available for this feature:

BLAST of Spg020686 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036474.1	1.7e-55	33.56	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0034843.1	2.8e-55	33.85	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033487.1	2.1e-50	53.93	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]
TYK26842.1	2.1e-50	53.93	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
TYK04867.1	4.1e-46	37.58	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg020686 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9KEI9	1.2e-08	56.00	Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 73...	[more]
Q07762	8.1e-05	52.50	Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1	[more]
O70338	6.9e-04	32.43	Ribonuclease H1 OS=Mus musculus OX=10090 GN=Rnaseh1 PE=2 SV=1	[more]

BLAST of Spg020686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYW1	8.0e-56	33.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SWD8	1.4e-55	33.85	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SW62	1.0e-50	53.93	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DTL0	1.0e-50	53.93	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BZA2	2.0e-46	37.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg020686 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	6.0e-11	37.50	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	3.2e-04	30.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037056	Ribonuclease H1, N-terminal domain superfamily	GENE3D	3.40.970.10		coord: 45..94 e-value: 2.0E-16 score: 61.9
IPR011320	Ribonuclease H1, N-terminal	PFAM	PF01693	Cauli_VI	coord: 48..89 e-value: 6.6E-16 score: 58.3
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 302..396 e-value: 1.8E-6 score: 28.9
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 174..289
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 174..289
IPR009027	Ribosomal protein L9/RNase H1, N-terminal	SUPERFAMILY	55658	L9 N-domain-like	coord: 48..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020686.1	Spg020686.1	mRNA