Spg020645 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020645
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold9: 16285223 .. 16286316 (+)
RNA-Seq Expression	Spg020645
Synteny	Spg020645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAACGAGAGCTAGAAAAGAGAGGGAGAATGAGGACGAAGAGGTACTTGTTACCCCTGAAGTACAGAAAGCGAAAACGAAAAAGAAGAAGACGCCAGAGGAGAAAGAAGCGAAAAGAAGAAGGAGGCAACAGAGGGCCGAGGATCAGGAGGCTTTACAGAAAGCGACGGATGATGTGGCTGCCACAGTAGTTGAAGAAAACCCGAAAGAACCAGAAAAACAGAACCTAGAACAGACTGAGCAGAGAGTCGCGGATACAGAAGAAGTTCAAGAGGAGCAAATAGAGGAAGTTCGAGAGGAAAATACCGAGGAAGTTCAAGAAGAGGAGCACACAGAGGAAGTTCAAGAAAAGCAGGCTGAGGATGTGCAAGAGCAATAGGCAGAAGATGTTCAGGTAACGGATAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGTGATCATGCCAGAAGTACCACGGATACTCCTTCGCCTCCAACCACGGATTCTGAAAGAGAAAATGCAGGAAGAGAGGAACGAGAAAAGAAGGAAGCTGAGGACAAGGCTAGAGAAGAAGAGGCAAAGCAAGCAGAAGAAGAGATTTTGCCCAAGCAAGCGGAAGACAAGGGCAAAGGTATTGCTGAGGCATCGAGTGAGGCTGACGAGATTGAGGAACCGAGATTACCGTACAATCGCTTCATCAATAACCTTGCTCGGGCAAAGTATGTTGAGATGTTGAGACTGGACTTCTTGTTTGAATGAGGATTTGGCGATGATCTGCCACGGTTCTTGGGGACTGGAATAGTGAACCTCGGCTGGAGTAAATTTTGTGCAAAGCCGGAACCTGTTAACTCAAACATTGTTCGGGAATTTTACGCCAATATTGACGATCACGAAGAATTTCAGGTTATCGTTCGAGGAGTGCCCGTTGACTGGAGCCCAGGAGCCATTAATTCTTTGTTCAACCTCCAGGACTTTCCACACGCAGGCTTTAATGAGATGGTGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCGAGAGGTTGGCATCGAGGGGGCCCAGTGGAGACTGTCGAAGACGGAAAAGCGCACATTTCAGGCTGCTTAG

mRNA sequence

ATGGCCAAAACGAGAGCTAGAAAAGAGAGGGAGAATGAGGACGAAGAGGTACTTGTTACCCCTGAAGTACAGAAAGCGAAAACGAAAAAGAAGAAGACGCCAGAGGAGAAAGAAGCGAAAAGAAGAAGGAGGCAACAGAGGGCCGAGGATCAGGAGGCTTTACAGAAAGCGACGGATGATGTGGCTGCCACAGTAGTTGAAGAAAACCCGAAAGAACCAGAAAAACAGAACCTAGAACAGACTGAGCAGAGAGTCGCGGATACAGAAGAAGTTCAAGAGGAGCAAATAGAGGAAGTTCGAGAGGAAAATACCGAGGAAGTTCAAGAAGAGGAGCACACAGAGGAAGTTCAAGAAAAGCAGGCTGAGGATGAGGCTCGAGTGGAGGTGATCATGCCAGAAGTACCACGGATACTCCTTCGCCTCCAACCACGGATTCTGAAAGAGAAAATGCAGGAAGAGAGGAACGAGAAAAGAAGGAAGCTGAGGACAAGGCTAGAGAAGAAGAGGCAAAGCAAGCAGAAGAAGAGATTTTGCCCAAGCAAGCGGAAGACAAGGGCAAAGGTATTGCTGAGGCATCGAGTGAGGCTGACGAGATTGAGGAACCGAGATTACCGTACAATCGCTTCATCAATAACCTTGCTCGGGCAAATGAACCTCGGCTGGAGTAAATTTTGTGCAAAGCCGGAACCTGTTAACTCAAACATTGTTCGGGAATTTTACGCCAATATTGACGATCACGAAGAATTTCAGGTTATCGTTCGAGGAGTGCCCGTTGACTGGAGCCCAGGAGCCATTAATTCTTTGTTCAACCTCCAGGACTTTCCACACGCAGGCTTTAATGAGATGGTGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCGAGAGGTTGGCATCGAGGGGGCCCAGTGGAGACTGTCGAAGACGGAAAAGCGCACATTTCAGGCTGCTTAG

Coding sequence (CDS)

ATGGCCAAAACGAGAGCTAGAAAAGAGAGGGAGAATGAGGACGAAGAGGTACTTGTTACCCCTGAAGTACAGAAAGCGAAAACGAAAAAGAAGAAGACGCCAGAGGAGAAAGAAGCGAAAAGAAGAAGGAGGCAACAGAGGGCCGAGGATCAGGAGGCTTTACAGAAAGCGACGGATGATGTGGCTGCCACAGTAGTTGAAGAAAACCCGAAAGAACCAGAAAAACAGAACCTAGAACAGACTGAGCAGAGAGTCGCGGATACAGAAGAAGTTCAAGAGGAGCAAATAGAGGAAGTTCGAGAGGAAAATACCGAGGAAGTTCAAGAAGAGGAGCACACAGAGGAAGTTCAAGAAAAGCAGGCTGAGGATGAGGCTCGAGTGGAGGTGATCATGCCAGAAGTACCACGGATACTCCTTCGCCTCCAACCACGGATTCTGAAAGAGAAAATGCAGGAAGAGAGGAACGAGAAAAGAAGGAAGCTGAGGACAAGGCTAGAGAAGAAGAGGCAAAGCAAGCAGAAGAAGAGATTTTGCCCAAGCAAGCGGAAGACAAGGGCAAAGGTATTGCTGAGGCATCGAGTGAGGCTGACGAGATTGAGGAACCGAGATTACCGTACAATCGCTTCATCAATAACCTTGCTCGGGCAAATGAACCTCGGCTGGAGTAAATTTTGTGCAAAGCCGGAACCTGTTAACTCAAACATTGTTCGGGAATTTTACGCCAATATTGACGATCACGAAGAATTTCAGGTTATCGTTCGAGGAGTGCCCGTTGACTGGAGCCCAGGAGCCATTAATTCTTTGTTCAACCTCCAGGACTTTCCACACGCAGGCTTTAATGAGATGGTGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCGAGAGGTTGGCATCGAGGGGGCCCAGTGGAGACTGTCGAAGACGGAAAAGCGCACATTTCAGGCTGCTTAG

Protein sequence

MAKTRARKERENEDEEVLVTPEVQKAKTKKKKTPEEKEAKRRRRQQRAEDQEALQKATDDVAATVVEENPKEPEKQNLEQTEQRVADTEEVQEEQIEEVREENTEEVQEEEHTEEVQEKQAEDEARVEVIMPEVPRILLRLQPRILKEKMQEERNEKRRKLRTRLEKKRQSKQKKRFCPSKRKTRAKVLLRHRVRLTRLRNRDYRTIASSITLLGQMNLGWSKFCAKPEPVNSNIVREFYANIDDHEEFQVIVRGVPVDWSPGAINSLFNLQDFPHAGFNEMVVAPSNDQLNAAVREVGIEGAQWRLSKTEKRTFQAA

Homology

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BLAST of Spg020645 vs. ExPASy TrEMBL
Match: A0A4Q3ENY7 (Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_09925 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-09
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 207 IASSITLLGQMN-----LGWSKFCAKPE-PVNSNIVREFYANIDDHEEFQVIVRGVPVDW 266
           ++S+  +  Q+N       W KFCA PE   N  ++ EFYAN+ DHE+  V VRGV VD 
Sbjct: 33  VSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTLMYEFYANLPDHEDDVVTVRGVDVDC 92

Query: 267 SPGAINSLFNLQD--FPHAGFNEMVVAPSNDQLNAAVREVGIEGAQWRLSKTEKRTFQ 317
           S GAIN+L    D  F + G+ + +  P+ D++ + +      G  W + K  ++ F+
Sbjct: 93  SVGAINALLGTPDIEFENEGYRQWLRNPNLDEMLSVLT---TPGENWVMDKGVRKLFR 147

The following BLAST results are available for this feature:

BLAST of Spg020645 vs.


Match Name	E-value	Identity	Description

BLAST of Spg020645 vs.


Match Name	E-value	Identity	Description

BLAST of Spg020645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Q3ENY7	6.5e-09	34.75	Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_099...	[more]

BLAST of Spg020645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 147..167
None	No IPR available	COILS	Coil	Coil	coord: 78..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020645.1	Spg020645.1	mRNA