Spg020362 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020362
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpentatricopeptide repeat-containing protein At1g80550, mitochondrial
Locationscaffold1: 27780879 .. 27783689 (-)
RNA-Seq ExpressionSpg020362
SyntenySpg020362
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAACTTGGGTGTAGTCCAAATGAGTCTGCTTACAATGCTTTGATTGATGCTCTTGTGGAGAAGGGCATGATAGATATGGCTAGGAAGTACGATGAAGAAATGGTAGCGAAGGGTCTTTCGCCTAAGCTAAGAGAGGAATTAGGGACAAAGATGGTGAATGGTGGCTCCAATGTAAACTGCAACAAATAGACACTTATCTGCACTCTTTGATGCTTGTAGACACGTCCGATCTTGGGATAGGAAAAAAAAATCAATTTTTATCTTTCCACTCGTGAAAGTTGTACCATTTTTATAAAGTTTTAATTTTATTACATTTGGGTGGAGAAATTTAAACTTTAACCTTTAGGTTGGGGATAAATGTCGATTCCGACGAAGCTATTGGTAAAATTTGATATTTATAACAATCTTATTGCACCTTACATATATGTCTTGCAATCTTAATCTTAAACTTGAAAAAATATTTTATTTTTACCTTATATGTATGTGGCATAAAATCGATAAGATTTTAAAATGAGTTTTGGCAAAATTATTTAATGGTTAATTTGTACCTAAATCAAATTTAAATTTGTGCATTGTTTCTGAAGGAGACAAGTCAAAGGAAAGGGGAAGGAGAATAGTAGAGAAGTAGAAAATATGGATCACCTGTCCTTCTAAATCCTGTATCTTCTTCTCCTTTGCTTCTAAAGTCTTTTTTTCCCTGACTGCAAATGAAATATCTCAAATACTTGGAAAAGAAAATGAAAACAACAATTACACAGAAATATCAGCTGCCCTATCTGTGTTAAGCTATTAAATTGGGATATAGTGGTGAAATATGAATTATGTTAAGTTTCTGAAACTATTCGCATGTAGACGTTGGGGCCTGAACTTGCAATTTTTTTTTTGTGGGCCGCTACATTTGCAATTATTTTGGGCCAGTTTGTTACATTTGCAACCGACCCTTTTATTTATTGAACTAATTCCGTTGGAATTAAGGTTTGTGGGAGGGGTAAATGCGTAATTTAGGGGTTTTAGTTTTTCCTTATTTGTCCTTGTCTTCTTCTTGCGTGTTGTGTGGTAATGTTGCAGGGGCTTTTTGGACTTTTGAGTGTGAAGTTGCCCATAGAGTGTTACTCTGCCCTTAGTTTTGAATTTGGAACGCCCAATGTAAAAGACATTGGAAGGGAAACGTAAAAATTTGACAATTGAATTTTTCAAAATGATGTATATTAAATTACGTTGATGTTAATATATTTTTAGAATTAAAATAACTATTTTTTGTAACTTCTTTTTAAACATTTCACTAAACTTGTACCAAAAAAAATAAAGGTGCAAGTTATTAAAAAAAACATTTGTTTCTTTTAAGTTCAACCTTCAAAAGCAATGTATCTCAAAAAAATAATAATAATAAAAATAAAAATAAATTCAAAAGCAATGGTTGGTATTTGAATTTAAACATTATAAATATTTTTAAGGTTAAAAATCACTTTTAGTCCCTGAACTTTGGTTTGTAACGATATAGTCCCTATACTTTCAATTTTGTAACAATTTAGTCCTTGTACTTTCAATTTTGTAACAATTTAGTCCCTGAACTTTAATAAGTAACAATTTAGTCCTTGTACTTTCAAATTTGTAACGATTTAGTCCCTATCGTGAAAAATTAATGTAAAGATTTAATGAAATTTCTTACCTTGATAGATTAATTAACTAATTTGGGATCCAATATGTTAATAAGCTACAAAGTTTAATCATTAAATAATAAAAATCAACATTTAATTTTGATGAATTTTTTTGCGACAAGGATTAAATTGTTACAATTTTGAAAGTATAGGGACTAAATTGTTACAAATTTGAAAGTATAGGGACTAAATTGTTACTTATTAAAGTTCAAGGACTAAATTGTTACAAAATTGAAAGTGCAGGGACTAAATCGTTACAAATTAAAGTTCAGGAACCAAATTGTTACTTTCATGAAAGTTCAGGGACCAAAAGTGATTTTTAACCTATTTTTAACTAGTCTAGTTGGGTTATTACAATTACACACTATAACTTTCAATTTCACCAATTTCTCTCATAAATTTACAATTTTTTTCCTTCAATCGAGATGATGGTTACGTTCAATATTGATATTAAAATCAAATCTTCCACGATTAATATTATAGCTCTCAAATTTTATATCGAATTGTTCGACCTAAGTCGAATGAAAAGGAGAAATTTGAAATTTTAACTAGTTAGAAGAAGGCTATTAGACAAATTCGATATGGATAGTGTTGATGGTCAAATTTGGTCGGGAGGAACTAACCTGACCTTCACGTGCCACCAACGGTAAATTTGTTTGATAGGGGGGAAGACGTGGCCTACAAGACAGTAAACCTGCACACCGGTGTGGTGCTAGCCACACCGCCTCCGATGCTTAAGTCAGAAAACGTAAGAGGAGAGCAAGAGAGTAAGAGTAGAGAGTTCGGGTCCCCTTCTTCAGTGGCGAAGAGGGGTATAAATACTTGCTTACGCTCGTAGGGTTTCAAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGTTGGAGGCTGCAGGGACCGAACGAAGTCGGAGGGACTCGGCCCATAGCCGAGGCAGACCATGGGCCTCGCCCTCAGCTGGTCGAGGCCGAGCAGGGGGTCGGGCCAAAAGCCCGACCCCTTCGGTCTTGGCCCGTCCTACTCGTCGGTTTCGCCTCTAGAGTCCATCTCTCAGCCCTATTTCTGTCCGATTGTCCTCGTCAGCGAGTACATCGGAGTGGTCCAAAATTACCTATAACAGATAGAGTCGCTCAATAA

mRNA sequence

ATGGAGGAACTTGGGTGTAGTCCAAATGAGTCTGCTTACAATGCTTTGATTGATGCTCTTGTGGAGAAGGGCATGATAGATATGGCTAGGAAGTACGATGAAGAAATGGTAGCGAAGGGTCTTTCGCCTAAGCTAAGAGAGGAATTAGGGACAAAGATGGTGAATGGTGGCTCCAATGGGCTTTTTGGACTTTTGAGTGTGAAGTTGCCCATAGAGTGTTACTCTGCCCTTAGTTTTGAATTTGGAACGCCCAATGTAAAAGACATTGGAAGGGAAACGGGGGAAGACGTGGCCTACAAGACAGTAAACCTGCACACCGGTGTGGTGCTAGCCACACCGCCTCCGATGCTTAAGTCAGAAAACGGTTTCAAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGTTGGAGGCTGCAGGGACCGAACGAAGTCGGAGGGACTCGGCCCATAGCCGAGGCAGACCATGGGCCTCGCCCTCAGCTGGTCGAGGCCGAGCAGGGGGTCGGGCCAAAAGCCCGACCCCTTCGGTCTTGGCCCGTCCTACTCGTCGGTTTCGCCTCTAGAGTCCATCTCTCAGCCCTATTTCTGTCCGATTGTCCTCGTCAGCGAGTACATCGGAGTGGTCCAAAATTACCTATAACAGATAGAGTCGCTCAATAA

Coding sequence (CDS)

ATGGAGGAACTTGGGTGTAGTCCAAATGAGTCTGCTTACAATGCTTTGATTGATGCTCTTGTGGAGAAGGGCATGATAGATATGGCTAGGAAGTACGATGAAGAAATGGTAGCGAAGGGTCTTTCGCCTAAGCTAAGAGAGGAATTAGGGACAAAGATGGTGAATGGTGGCTCCAATGGGCTTTTTGGACTTTTGAGTGTGAAGTTGCCCATAGAGTGTTACTCTGCCCTTAGTTTTGAATTTGGAACGCCCAATGTAAAAGACATTGGAAGGGAAACGGGGGAAGACGTGGCCTACAAGACAGTAAACCTGCACACCGGTGTGGTGCTAGCCACACCGCCTCCGATGCTTAAGTCAGAAAACGGTTTCAAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGTTGGAGGCTGCAGGGACCGAACGAAGTCGGAGGGACTCGGCCCATAGCCGAGGCAGACCATGGGCCTCGCCCTCAGCTGGTCGAGGCCGAGCAGGGGGTCGGGCCAAAAGCCCGACCCCTTCGGTCTTGGCCCGTCCTACTCGTCGGTTTCGCCTCTAGAGTCCATCTCTCAGCCCTATTTCTGTCCGATTGTCCTCGTCAGCGAGTACATCGGAGTGGTCCAAAATTACCTATAACAGATAGAGTCGCTCAATAA

Protein sequence

MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGGSNGLFGLLSVKLPIECYSALSFEFGTPNVKDIGRETGEDVAYKTVNLHTGVVLATPPPMLKSENGFKEFGGVSGQTRRNRGGWRLQGPNEVGGTRPIAEADHGPRPQLVEAEQGVGPKARPLRSWPVLLVGFASRVHLSALFLSDCPRQRVHRSGPKLPITDRVAQ
Homology
[Close]
BLAST of Spg020362 vs. NCBI nr
Match: XP_022148858.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Sbjct: 396 MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 452

[Close]
BLAST of Spg020362 vs. NCBI nr
Match: XP_038896131.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Benincasa hispida] >XP_038896132.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Sbjct: 396 MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 452

[Close]
BLAST of Spg020362 vs. NCBI nr
Match: KAG7014158.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-21
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Sbjct: 396 MEELGCSPDESAYNSLIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 452

[Close]
BLAST of Spg020362 vs. NCBI nr
Match: KAG6575615.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-21
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Sbjct: 396 MEELGCSPDESAYNSLIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 452

[Close]
BLAST of Spg020362 vs. NCBI nr
Match: XP_023522861.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 8.3e-21
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSP+ESAYN+LIDALVEKGMIDMARKYDEEMV KGLSPKLREELGTKMVNGG
Sbjct: 186 MEELGCSPDESAYNSLIDALVEKGMIDMARKYDEEMVVKGLSPKLREELGTKMVNGG 242

[Close]
BLAST of Spg020362 vs. ExPASy Swiss-Prot
Match: Q9M8M3 (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80550 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-11
Identity = 31/55 (56.36%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVN 56
           M+E G +P+ +AYNA+IDAL++KGM+DMAR+Y+EEM+ +GLSP+ R EL  K ++
Sbjct: 387 MKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSPRRRPELVEKSLD 441

[Close]
BLAST of Spg020362 vs. ExPASy Swiss-Prot
Match: Q8LDU5 (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 3.9e-05
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0 

Query: 5   GCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 44
           GCSPN  +Y  LI  L ++GM D  +KY EEM++KG SP
Sbjct: 325 GCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSP 363

[Close]
BLAST of Spg020362 vs. ExPASy TrEMBL
Match: A0A6J1D599 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111017413 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Sbjct: 396 MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 452

[Close]
BLAST of Spg020362 vs. ExPASy TrEMBL
Match: A0A5A7UVK9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G001970 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSPNE AYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR ELGTKMVNGG
Sbjct: 385 MEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLRVELGTKMVNGG 441

[Close]
BLAST of Spg020362 vs. ExPASy TrEMBL
Match: A0A1S3CFA1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499823 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSPNE AYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR ELGTKMVNGG
Sbjct: 385 MEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLRVELGTKMVNGG 441

[Close]
BLAST of Spg020362 vs. ExPASy TrEMBL
Match: A0A6J1GNU3 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455781 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.8e-21
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSPKLR ELGTKMVNGG
Sbjct: 413 MEELGCSPDESAYNSLIDALVEKGMIDMARKYDEEMVAKGLSPKLRAELGTKMVNGG 469

[Close]
BLAST of Spg020362 vs. ExPASy TrEMBL
Match: A0A0A0KBR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432170 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-20
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG 58
           MEELGCSPNE AYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR ELGT+M+NGG
Sbjct: 385 MEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLRVELGTQMMNGG 441

[Close]
BLAST of Spg020362 vs. TAIR 10
Match: AT1G80550.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-12
Identity = 31/55 (56.36%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1   MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVN 56
           M+E G +P+ +AYNA+IDAL++KGM+DMAR+Y+EEM+ +GLSP+ R EL  K ++
Sbjct: 387 MKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSPRRRPELVEKSLD 441

[Close]
BLAST of Spg020362 vs. TAIR 10
Match: AT4G01400.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-06
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0 

Query: 5   GCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 44
           GCSPN  +Y  LI  L ++GM D  +KY EEM++KG SP
Sbjct: 325 GCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSP 363

[Close]
BLAST of Spg020362 vs. TAIR 10
Match: AT2G15980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 9.8e-04
Identity = 18/40 (45.00%), Postives = 27/40 (67.50%), Query Frame = 0 

Query: 2   EELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGL 42
           EE+GCSPN  +YN L++A   +G++  A K  EEM  +G+
Sbjct: 273 EEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGV 312

The following BLAST results are available for this feature:
BLAST of Spg020362 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022148858.13.4e-22100.00pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica ... [more]
XP_038896131.13.4e-22100.00pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Benincasa ... [more]
KAG7014158.12.8e-2196.49Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6575615.12.8e-2196.49Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023522861.18.3e-2194.74pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Cucur... [more]
BLAST of Spg020362 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M8M32.8e-1156.36Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop... [more]
Q8LDU53.9e-0553.85Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidop... [more]
BLAST of Spg020362 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D5991.6e-22100.00pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Momordic... [more]
A0A5A7UVK94.0e-2196.49Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CFA14.0e-2196.49pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis ... [more]
A0A6J1GNU36.8e-2194.74pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbit... [more]
A0A0A0KBR12.6e-2092.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432170 PE=4 SV=1[more]
BLAST of Spg020362 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G80550.12.0e-1256.36Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G01400.32.7e-0653.85FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G15980.19.8e-0445.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..47
e-value: 1.1E-8
score: 37.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 12..43
e-value: 2.0E-5
score: 22.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.432693
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..148
NoneNo IPR availablePANTHERPTHR47942:SF22OSJNBA0033G05.8 PROTEINcoord: 1..56
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020362.1Spg020362.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding