Spg020355 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020355
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDUF4283 domain-containing protein
Locationscaffold1: 27162390 .. 27164736 (+)
RNA-Seq ExpressionSpg020355
SyntenySpg020355
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATTACTTTAATCTACTTCATCGTTCATGATATCCATTATCTTGTAAAAGGCTTCTTACTCTGGTTTGTAATCTCAGGTGGATAGCTGATTCAGTGACAGCTTTTGACATGCGTACATGAAGATGCTTTTGGGGTACAAAGGTAAATCAGAATCTTAAGATTTTGTTTGAATAAAAATTAAAAGAACTTAACTAATTGAAAACTTTTGCCTTAGAAATCTATTTGAGAACCATACAATGGTTCCCCCACCCAGTCATGTACTTGCATCTACCATATAAAAAACTTATCATTTAGGCTTTGGCTAAAGGAGTTTGTGTTTATTGATTCTGAAAGTCTGGGATTCATATTGACTTTTGTTCTAGTACTTGTTAGCTAGAGTAGCGGTAACCAGTGCATTGTTTCATATTTGTGAAATAAGGAAATGAAAATTGAATCCTATTTCCATGTCTTTTGAGACTCGGTTTTAGGCTTTAACCTTCCCCTTGGGACCAAGAAAGGGCTGATATTAGCGAATGCTCGTAGCGTCCTTGCTTTCTTGATATCAGTAATCAAGGATCTCTCTTCCTTCTGGTAGGTGCAAGCGAGAAAATGAATATCGATATGTATAAGAACAAAATTGGACCAAAATTTTTCATGGGAAGTCAAGTTTAGCCCATGGAAAGAGATCATAAAAGCAAATGCCTTTTTCTGGAACCAAGTTAGATACAAGCTGGGAGATGGTAACAACATTCTGTTTTGGGAAGACAAATGGATTAAAAACCAGCCTCTAAAGGAGTTGTTTCCAAACATGTATAGATTATCAAATGCTAAAGGTAGCACTGTTGAAGATGTGTGGATCTCTTCTAGCCTTTATTGGGACTTAAAGATGAGAAGGGGCTATTTTGATAGAGAGGTGGAAGAGTGGGGTTCTCTTAGTGCTGGTTTGAAGAGTTTCTTGCCTAATTCTAGAGAGGATCAGCTACTGTGGGGGCTCGAATATGGTGGGAATTTCTCGGTAAAGTCGGTTTATCTAGAGTTGCAAGGGAAGAGAATGTTATTAGATAGCTCTTGTTGCTCGGTGATTTGGGAAGGCTCAGTGCCTAAAAGGGTGAAGTTCTTTTTGTGGACTACAACCTTCAGAGGTGTTAATACTTTTGACAAAGTTCAGATGAGATATCCTCATATTTCAATCTCCTTGAATATATGTATGTTGTGTAAGAAGGAAGGCGAGTCTCTAAACCACCTTTTCCTTCATTGTCCTTTTAGCATAAGGGTTGGGATCATTTTGGCAGGTTGGTTGGTTTGAGCTGGTGTGTTCCTTGGTCGGTGAAAGAACGGATGAAAGATACCCTAATGGGAGGTAGTTTCAAAGATAAAGCTAAGATGTTATGGAGCAATGCTTCAAAGGCTATTATGTGGCTTCTTTGGAAGGAAAGAAATAATAGAATTTTTTCAAATAAGTTTATTTCTTTTGAGTCTTTTTGTGATATTGTTCAATTCACGGCCTCCAATTGGAGTAACCTTCACAACCGCTTTTGTAATTACATCACCTTCACCATTAACTTAGATTGGAAGGTTTTTTTTTTATTATTTATTTATTTATTTATTTATTTTATTTTTTTAAACTTCTTTCAGTTCGGGGAGGGACACCTTGTCCCTTGCCCGTTAGGTTGTGCAATTGTTTTTTATGAAATGAAGTAATTATCGTTTCTTATAAAAAATATATATATATATATATATCAATATGTATAATTTTCGTGAGTAGTTCAAGAGAAAACCAAGAGGAAAAAGCTCAAGAGTCGAATGCTAAAACCCCCCTTCCAAAGGAAAGAAAGTGCAGGAAAATATGTTGGGATCAAACCTTAGTCGTTACTAGACGATGCTTCCATAATGAATGGATCAAAATATATGAAACGCTGTGTGACGCCTTCTAGAAAGATTTGATAATCAACCCATTTCACCCAGACAAAGCGCTTTTAAAGTGTCCAGATGCTGACTTTGCAAGGATCATGACATTTAATAAAGGATGGAAGATCATTGGAAATTTTACTTTGAAGTTTGAATATTGGAACTATGAGCTGCACGGAAGAATTAATGTGGTTCCATCCCATGGTGGTTGGCTTCGTTTTCATAACATTCCTCTCCAGAACTGGTGCATTGAAACATTTAAAGCTATCGGGGATGCTTATGGAGGTTACATTGAATGTGTTGATAAATGTTTATCTTTAATTGGTTGTATGGAAGCTGTTATTAGAGTTAAAGGCAATTATTGTGGTTTTATTCCGATCGAAATTGATTTGAAACAGGAAAACGGCGCTGTTGCGGTTGTCCAAGTGGTAACGTTCGAGGATCCCAAGCTCTGA

mRNA sequence

ATGTATAGATTATCAAATGCTAAAGGTAGCACTGTTGAAGATGTGTGGATCTCTTCTAGCCTTTATTGGGACTTAAAGATGAGAAGGGGCTATTTTGATAGAGAGGTGGAAGAGTGGGGTTCTCTTAGTGCTGGTTTGAAGAGTTTCTTGCCTAATTCTAGAGAGGATCAGCTACTGTGGGGGCTCGAATATGACAAAGCGCTTTTAAAGTGTCCAGATGCTGACTTTGCAAGGATCATGACATTTAATAAAGGATGGAAGATCATTGGAAATTTTACTTTGAAGTTTGAATATTGGAACTATGAGCTGCACGGAAGAATTAATGTGGTTCCATCCCATGGTGGTTGGCTTCGTTTTCATAACATTCCTCTCCAGAACTGGTGCATTGAAACATTTAAAGCTATCGGGGATGCTTATGGAGGTTACATTGAATGTGTTGATAAATGTTTATCTTTAATTGGTTGTATGGAAGCTGTTATTAGAGTTAAAGGCAATTATTGTGGTTTTATTCCGATCGAAATTGATTTGAAACAGGAAAACGGCGCTGTTGCGGTTGTCCAAGTGGTAACGTTCGAGGATCCCAAGCTCTGA

Coding sequence (CDS)

ATGTATAGATTATCAAATGCTAAAGGTAGCACTGTTGAAGATGTGTGGATCTCTTCTAGCCTTTATTGGGACTTAAAGATGAGAAGGGGCTATTTTGATAGAGAGGTGGAAGAGTGGGGTTCTCTTAGTGCTGGTTTGAAGAGTTTCTTGCCTAATTCTAGAGAGGATCAGCTACTGTGGGGGCTCGAATATGACAAAGCGCTTTTAAAGTGTCCAGATGCTGACTTTGCAAGGATCATGACATTTAATAAAGGATGGAAGATCATTGGAAATTTTACTTTGAAGTTTGAATATTGGAACTATGAGCTGCACGGAAGAATTAATGTGGTTCCATCCCATGGTGGTTGGCTTCGTTTTCATAACATTCCTCTCCAGAACTGGTGCATTGAAACATTTAAAGCTATCGGGGATGCTTATGGAGGTTACATTGAATGTGTTGATAAATGTTTATCTTTAATTGGTTGTATGGAAGCTGTTATTAGAGTTAAAGGCAATTATTGTGGTTTTATTCCGATCGAAATTGATTTGAAACAGGAAAACGGCGCTGTTGCGGTTGTCCAAGTGGTAACGTTCGAGGATCCCAAGCTCTGA

Protein sequence

MYRLSNAKGSTVEDVWISSSLYWDLKMRRGYFDREVEEWGSLSAGLKSFLPNSREDQLLWGLEYDKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPLQNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVAVVQVVTFEDPKL
Homology
[Close]
BLAST of Spg020355 vs. NCBI nr
Match: XP_022149859.1 (uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncharacterized protein LOC111018186 [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 5.5e-29
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 0 

Query: 37  EEWGSLSAGLKSFLPNSREDQLLWGLEYDKALLKCPDADFARIMTFNKGWKIIGNFTLKF 96
           ++W  + + +K     +    ++   + DKAL+KCP  D A ++  NKGW   G  T+K 
Sbjct: 59  DDWSRILSYVKE---QTESSYIINPFQADKALMKCPSKDLACLLLTNKGWVTFGPVTVKL 118

Query: 97  EYWNYELHGRINVVPSHGGWLRFHNIPLQNWCIETFKAIGDAYGGYIECVDKCLSLIGCM 156
           E WN  LHGR  + PS+G W++  NIPL  W + TFKAIG+A GG+I+  D     I C 
Sbjct: 119 EAWNPLLHGRAFLFPSYGNWVKIRNIPLHLWSLATFKAIGNALGGFIDYDDNNSCFIECF 178

Query: 157 EAVIRVKGNYCGFIPIEIDLKQENGAVAVVQVVTFEDPK 196
           +  I+VK NYCGFIP EI    +       +VV+FED K
Sbjct: 179 DVAIKVKSNYCGFIPAEIS-SMDGPLCFQAKVVSFEDSK 213

[Close]
BLAST of Spg020355 vs. NCBI nr
Match: KAA0041398.1 (hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-25
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 0 

Query: 65  DKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPL 124
           DKALL   D D A+++  N GW  +G F +KFE W+  +H    V+PS+GGW RF  IPL
Sbjct: 255 DKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSVHADTKVIPSYGGWTRFRGIPL 314

Query: 125 QNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVA 184
             W + TF  IG+A GG+I+   + ++ I   EA+I+VK NY GF+P  I +  E G V 
Sbjct: 315 HIWNLNTFIHIGEACGGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQIHDEEGHVF 374

Query: 185 VVQVVT 191
           ++Q+VT
Sbjct: 375 IIQIVT 380

[Close]
BLAST of Spg020355 vs. NCBI nr
Match: KAA0044557.1 (hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-25
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 65  DKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPL 124
           DKALL   D D A+++  N GW  +G F +KFE W+   H    V+PS+GGW RF  IPL
Sbjct: 232 DKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFRGIPL 291

Query: 125 QNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVA 184
             W + TF  IG+A GG+I+   + ++ I   EA+I+VK NY GF+P  I +  E G V 
Sbjct: 292 HIWNLNTFIQIGEACGGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQIHDEEGHVF 351

Query: 185 VVQVVT 191
           ++Q VT
Sbjct: 352 IIQTVT 357

[Close]
BLAST of Spg020355 vs. NCBI nr
Match: KAA0044449.1 (hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-24
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 65  DKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPL 124
           DKALL   D + A+++  N GW  +G F +KFE W+   H    V+PS+GGW RF  IPL
Sbjct: 230 DKALLFIKDKELAKLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPL 289

Query: 125 QNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVA 184
             W + TF  IG+AYGG+I+   + ++ +   EA+I+VK NY GF+P  I +  E G   
Sbjct: 290 HIWNLNTFIQIGEAYGGFIDAAPESVNKLELTEALIKVKENYTGFLPAFIQIHDEEGHDF 349

Query: 185 VVQVVT 191
           ++Q VT
Sbjct: 350 IIQTVT 355

[Close]
BLAST of Spg020355 vs. NCBI nr
Match: TYK29576.1 (hypothetical protein E5676_scaffold655G001820 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-24
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 65  DKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPL 124
           DKALL   D + A+++  N GW  +G F +KFE W+   H    V+PS+GGW RF  IPL
Sbjct: 230 DKALLFIKDKELAKLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPL 289

Query: 125 QNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVA 184
             W + TF  IG+AYGG+I+   + ++ +   EA+I+VK NY GF+P  I +  E G   
Sbjct: 290 HIWNLNTFIQIGEAYGGFIDAAPESVNKLELTEALIKVKENYTGFLPAFIQIHDEEGHDF 349

Query: 185 VVQVVT 191
           ++Q VT
Sbjct: 350 IIQTVT 355

[Close]
BLAST of Spg020355 vs. ExPASy TrEMBL
Match: A0A6J1D6X4 (uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018186 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 0 

Query: 37  EEWGSLSAGLKSFLPNSREDQLLWGLEYDKALLKCPDADFARIMTFNKGWKIIGNFTLKF 96
           ++W  + + +K     +    ++   + DKAL+KCP  D A ++  NKGW   G  T+K 
Sbjct: 59  DDWSRILSYVKE---QTESSYIINPFQADKALMKCPSKDLACLLLTNKGWVTFGPVTVKL 118

Query: 97  EYWNYELHGRINVVPSHGGWLRFHNIPLQNWCIETFKAIGDAYGGYIECVDKCLSLIGCM 156
           E WN  LHGR  + PS+G W++  NIPL  W + TFKAIG+A GG+I+  D     I C 
Sbjct: 119 EAWNPLLHGRAFLFPSYGNWVKIRNIPLHLWSLATFKAIGNALGGFIDYDDNNSCFIECF 178

Query: 157 EAVIRVKGNYCGFIPIEIDLKQENGAVAVVQVVTFEDPK 196
           +  I+VK NYCGFIP EI    +       +VV+FED K
Sbjct: 179 DVAIKVKSNYCGFIPAEIS-SMDGPLCFQAKVVSFEDSK 213

[Close]
BLAST of Spg020355 vs. ExPASy TrEMBL
Match: A0A5A7TEP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00440 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.2e-26
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 0 

Query: 65  DKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPL 124
           DKALL   D D A+++  N GW  +G F +KFE W+  +H    V+PS+GGW RF  IPL
Sbjct: 255 DKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSVHADTKVIPSYGGWTRFRGIPL 314

Query: 125 QNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVA 184
             W + TF  IG+A GG+I+   + ++ I   EA+I+VK NY GF+P  I +  E G V 
Sbjct: 315 HIWNLNTFIHIGEACGGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQIHDEEGHVF 374

Query: 185 VVQVVT 191
           ++Q+VT
Sbjct: 375 IIQIVT 380

[Close]
BLAST of Spg020355 vs. ExPASy TrEMBL
Match: A0A5A7TRS9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003060 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-25
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 65  DKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPL 124
           DKALL   D D A+++  N GW  +G F +KFE W+   H    V+PS+GGW RF  IPL
Sbjct: 232 DKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFRGIPL 291

Query: 125 QNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVA 184
             W + TF  IG+A GG+I+   + ++ I   EA+I+VK NY GF+P  I +  E G V 
Sbjct: 292 HIWNLNTFIQIGEACGGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQIHDEEGHVF 351

Query: 185 VVQVVT 191
           ++Q VT
Sbjct: 352 IIQTVT 357

[Close]
BLAST of Spg020355 vs. ExPASy TrEMBL
Match: A0A5D3E0Y8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001820 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 65  DKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPL 124
           DKALL   D + A+++  N GW  +G F +KFE W+   H    V+PS+GGW RF  IPL
Sbjct: 230 DKALLFIKDKELAKLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPL 289

Query: 125 QNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVA 184
             W + TF  IG+AYGG+I+   + ++ +   EA+I+VK NY GF+P  I +  E G   
Sbjct: 290 HIWNLNTFIQIGEAYGGFIDAAPESVNKLELTEALIKVKENYTGFLPAFIQIHDEEGHDF 349

Query: 185 VVQVVT 191
           ++Q VT
Sbjct: 350 IIQTVT 355

[Close]
BLAST of Spg020355 vs. ExPASy TrEMBL
Match: A0A5A7TTA1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001820 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 65  DKALLKCPDADFARIMTFNKGWKIIGNFTLKFEYWNYELHGRINVVPSHGGWLRFHNIPL 124
           DKALL   D + A+++  N GW  +G F +KFE W+   H    V+PS+GGW RF  IPL
Sbjct: 230 DKALLFIKDKELAKLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPL 289

Query: 125 QNWCIETFKAIGDAYGGYIECVDKCLSLIGCMEAVIRVKGNYCGFIPIEIDLKQENGAVA 184
             W + TF  IG+AYGG+I+   + ++ +   EA+I+VK NY GF+P  I +  E G   
Sbjct: 290 HIWNLNTFIQIGEAYGGFIDAAPESVNKLELTEALIKVKENYTGFLPAFIQIHDEEGHDF 349

Query: 185 VVQVVT 191
           ++Q VT
Sbjct: 350 IIQTVT 355

The following BLAST results are available for this feature:
BLAST of Spg020355 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149859.15.5e-2940.88uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncha... [more]
KAA0041398.11.3e-2544.44hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa][more]
KAA0044557.13.7e-2544.44hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa][more]
KAA0044449.12.4e-2442.86hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa][more]
TYK29576.12.4e-2442.86hypothetical protein E5676_scaffold655G001820 [Cucumis melo var. makuwa][more]
BLAST of Spg020355 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg020355 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D6X42.7e-2940.88uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5A7TEP06.2e-2644.44DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TRS91.8e-2544.44DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3E0Y81.2e-2442.86DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TTA11.2e-2442.86DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Spg020355 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020355.1Spg020355.1mRNA