Spg020301 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020301
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionexosome complex component RRP43
Locationscaffold1: 22547412 .. 22551342 (+)
RNA-Seq ExpressionSpg020301
SyntenySpg020301
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTGCCAAATGCTGCTTCCGGGGACTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCAATTCAGTTTTTTGAGCGCCATCTTGCTGAATCAATACGTCCCGATGGAAGAGCATTGGGAAAAGCTAGAGATACAACCATTGCTCTTGGTTAGTTGTAAGCCTTGGTTTTCATGTAATTCCTATATCTTTATGATTTCTAGCTTTTGTTTATTAACTCGGGTTTGATTGTTGATTGATTTTGATACTCAAAACTGAATTTGGGTGTCGTCTATTCATATAAGGACCAGTATCATCTGCGAATGGGTCAGCCCTGGCTAAGATTGGTTCTACGGTAAGTGCCTCCACACTTGTCTTTATCATCTGTGCTGGGATTTTGTGATGGTTTGTTCTTAACTTGATATGGTGCAGACAATGTTGGCCGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGTATAGGTTGGCCATTGTTAACTGCTAAATATTTTTGGTCCTTGTTCATAATAATCTGTACGATATCATCCTATACATCTTGGTGATATTGGGTCTATCTTTTTTCAGCTGTTGACTTTCATATGCCTCCAATATGCTCTCCCATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTGTCTGATACTATTTCAAGGTACCATTTCACCTTTTTTGCAATTTAACATATTCTTGGGTCAAAATTTTTAGGTTGTTATTCTCCTTTTTGATTTATACCAATTGTAGGGCTTTGTTATTGCCTTTGTTTTTTTGTAGGTTTGGATATGACTTATCTTTCTTTTGTTTTAACCTCCTTTGTAATTAAACTGACCTATTGCGAACTATTCTGCTTGTGGTTGTATTGTGTTCTTTAATATTCCATAAGCCAACTTGTTCTCTCCAAAGGGTATATAATAGATGTTTACTCATCAATATTATGTTCTCTCCACGACCCTTTTCTTGCTCTTTAGATGTGATCCTAAAAAATTCAATTATTAGATTATTGCTGTTTAATGGAGATCTGGTAAAGAGAATCAAACTACTTTTATGTTTCTGATCTCTTATCCTTGTCCTAAAGGTCAATTTCCTTTGAGCACTTGACTGACTAACTAAGAAACTGATGATGTGAACTTTTCAGTTCTGGGATGATTGATTTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGTATATGTTTTAAATTTATGCATTGTTCGTATTTATACTTTTTTTATTGTAGAAGTATGTTGGTGTCTGAAGTAAGGCCTATTACCTTTATTTTTCTGTCTGAAATTTGTACTTGTGCCGTGCTACTCTTATTGGAATTTTCTTTTTGTAACATGTTTTTGGCCTGATTACAGCTTTATTATTGTAGTTAACTATTTTGAATGAGATAGCGACTTGCCATGTGTTCCCCAGGATATTTATTGCTTGGATGCTGATGGATCTCTTTTCGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTAAGATTTCAGCCTTTCAACTAGTTCATAACTTGATGTTTTGTGCATAATTTGGTAGATGTTGTTTTATGCTTATGGCAGTAATGCTGGTTATAGGACATTTATTCTCCATTAAGAATAGTTTTATTCAGATCATAGATTGATACTTCAGACTTGCCAAAACTGTTACTAGATTATATTTCAGAAATTATTCATTTCTTTAAATTATATTGTTATTACAATTTATGGGGACATTCAGTAATTAAGTCACCAACTTAACTTCCACAGCATTCCAATCCCCCCAAAAAAAAGAAAAAGAAAAACTACTATATCATTTATCTATTATGTCAAACAACAGTCAACCATCCTCAAGAACTATTTAGATACATTTCTTAAATCTCAAAGACTAAAGTGTTGCTTTCCAAATTTTAGGGACTAAATAGGAACCAAGTCCAAACCTTAAAGACCATAAGTGAAATTTACCTGAAAAAACTGTGGTTACAGAAGAATTTCTTACAAAAGGCACTGCAAGAAGAGATTGTAAATTGTATTTTTTGCCAAAGTAATCCTATCTCTAAAAGTTTTTCTTTTTTCTTTTTAAAAAAATTTTGTTTTATCCAATTAAGCCACATTAATGCTCTAGCTGCACAAATTCGAAGGGCTTTGGCCTTGTCTTTTAACCACCATCTTGAGATTGCTTCGTGCAACGAATTATCATACCATTTAGGCAAGCAAAGAGATGTTGCTGACAAGTATGTTGGATGGACCATTGATTATTTAAATAGGCCTATTTTTTATGCCTATTTATAGATATCAGAGCCTTGCCAGTTGCTGTTACAAACGGTAATTAAAAATTAATAAGCCAACTAACTGCCATGGTGAAGTACTGTTAGGAAGGTACATTAAAAAAACACATAAGCTAATCACTCTTTACAACTGATTAGCCTGCATCAAGTGCCCAATATGTGTCAGACATGATTTTTTTACCTTAACTATAATATCCATGCTTAATGGTTTTTTTTTCTTCCTCTTTAGATTTCTAGGCTTCACCCACCGGGGTGAGGGGGTATGACATGAACTAGGTTCAAACCTTCTTTGTTTCACATCTTCTGGACGATCATGACTACCTTGATTTTTGCTGAAAAAGATTTATAGGCATATTGATAAGCCATAAGGTGGCAATTGGAGTCTTTCTGTAACTCATTTGGTTTTGTAGGAAACTATTTTATCCTCCCTTCTTTGGCCAATCAAAGGGAAGAATAATCTTGAACTTGTAAGTTGTAATATGTTATCTTCTGTTGATCTTATGTCATATGTGTATGAAACATGTCAGTGATTAATGGCTATTTGTTGAGGCTTCTTTAAAAAATCCAATAATTGCTATTCAAAAGCTCAAAAATGTTAATATGAGGTTTCTTTTCTATCTTGTTTGTTAACTTGGTAATCTGAACCACTTTTAGAATGTTTGCTCTCTTTTTCTCCACCGTGCCATATTTTAAACTTCTTCCTCGTTTATATTGTTAGTGCAAATCCCCGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTATCTCTGAAGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAACTGTATTCCTTTCTCATTAACATGCCTACTCCACAAGAACTATATCTTGGCAGACCCTAATGCAGAGGAGGAGTCTGTCATGGAAACTATTGTGACCGTGGTTTTAGATTCATCTGGTCAACTGGTGTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTACACATCATCTGTTCAGGTTGGTCTCTCCTTTCTCTGGCAAGTTTATTGATGGAATCCAATTCGTTAGAGAATGAATTAGTTCTCTGTATTTCTTCTTTCTTCACATTTTCCCTGTCTGTTAAGTTTGGTGAAGCTGGTTGGATTTTCAATATGGTGTTGGATTTTTAAAAAGTGTTCTTGAAAATTCTAAAAATGCTTTGAAGCATCTCGTCTCAATGGAGGAAGCAAGCCATTCTTCTCATGATGATGATCATCATTATTATCATTTGCTCATACAGAAGCACTTTGATTTACGAAAAATTACAATATCACCCAATCTCAAAAGTTTCCGACTCTTTTGTGTATCTTACTTTAAGATGCACATTCTTTTTAAAAACTATAATTTAGATTAGAGTAACTGGTATACCACAGTTGTGATTTTGCACCTTACAAAGTTTCAATGAACAAATTGTGATTTAAGTGTAAGTGAATACATGATACCCATGTGTGAATGGCGTGGTTGCAGGATTGTGTTGCATTGACAAGACAAAGATTGAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGTATGGAAATTGACTAA

mRNA sequence

ATGGGACTGCCAAATGCTGCTTCCGGGGACTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCAATTCAGTTTTTTGAGCGCCATCTTGCTGAATCAATACGTCCCGATGGAAGAGCATTGGGAAAAGCTAGAGATACAACCATTGCTCTTGGACCAGTATCATCTGCGAATGGGTCAGCCCTGGCTAAGATTGGTTCTACGACAATGTTGGCCGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGTATAGCTGTTGACTTTCATATGCCTCCAATATGCTCTCCCATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTGTCTGATACTATTTCAAGTTCTGGGATGATTGATTTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGATATTTATTGCTTGGATGCTGATGGATCTCTTTTCGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTCTGCACAAATTCGAAGGGCTTTGGCCTTGTCTTTTAACCACCATCTTGAGATTGCTTCGTGCAACGAATTATCATACCATTTAGGCAAGCAAAGAGATGTTGCTGACAAATTTCTAGGCTTCACCCACCGGGTGCAAATCCCCGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTATCTCTGAAGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAACTGTATTCCTTTCTCATTAACATGCCTACTCCACAAGAACTATATCTTGGCAGACCCTAATGCAGAGGAGGAGTCTGTCATGGAAACTATTGTGACCGTGGTTTTAGATTCATCTGGTCAACTGGTGTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTACACATCATCTGTTCAGGATTGTGTTGCATTGACAAGACAAAGATTGAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGTATGGAAATTGACTAA

Coding sequence (CDS)

ATGGGACTGCCAAATGCTGCTTCCGGGGACTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCAATTCAGTTTTTTGAGCGCCATCTTGCTGAATCAATACGTCCCGATGGAAGAGCATTGGGAAAAGCTAGAGATACAACCATTGCTCTTGGACCAGTATCATCTGCGAATGGGTCAGCCCTGGCTAAGATTGGTTCTACGACAATGTTGGCCGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGTATAGCTGTTGACTTTCATATGCCTCCAATATGCTCTCCCATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTGTCTGATACTATTTCAAGTTCTGGGATGATTGATTTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGATATTTATTGCTTGGATGCTGATGGATCTCTTTTCGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTCTGCACAAATTCGAAGGGCTTTGGCCTTGTCTTTTAACCACCATCTTGAGATTGCTTCGTGCAACGAATTATCATACCATTTAGGCAAGCAAAGAGATGTTGCTGACAAATTTCTAGGCTTCACCCACCGGGTGCAAATCCCCGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTATCTCTGAAGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAACTGTATTCCTTTCTCATTAACATGCCTACTCCACAAGAACTATATCTTGGCAGACCCTAATGCAGAGGAGGAGTCTGTCATGGAAACTATTGTGACCGTGGTTTTAGATTCATCTGGTCAACTGGTGTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTACACATCATCTGTTCAGGATTGTGTTGCATTGACAAGACAAAGATTGAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGTATGGAAATTGACTAA

Protein sequence

MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQIRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID
Homology
[Close]
BLAST of Spg020301 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 551.2 bits (1419), Expect = 6.4e-153
Identity = 295/348 (84.77%), Postives = 300/348 (86.21%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIPVVALNDDGKVVF+SE
Sbjct: 181 -----------------------------------------LQIPVVALNDDGKVVFVSE 240

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           EEGGENFEKE VNKEKRKLKLN +PFSLTCLLHKNYILADP AEEESVMETIVTVVLDSS
Sbjct: 241 EEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSS 300

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDCVALTRQR KELQMILDEAISGMEID
Sbjct: 301 GQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGMEID 304

[Close]
BLAST of Spg020301 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 550.1 bits (1416), Expect = 1.4e-152
Identity = 294/348 (84.48%), Postives = 300/348 (86.21%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIPVVALNDDGKVVF+SE
Sbjct: 181 -----------------------------------------LQIPVVALNDDGKVVFVSE 240

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           EEGGENFEKE VNKE+RKLKLN +PFSLTCLLHKNYILADP AEEESVMETIVTVVLDSS
Sbjct: 241 EEGGENFEKEAVNKERRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSS 300

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDCVALTRQR KELQMILDEAISGMEID
Sbjct: 301 GQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGMEID 304

[Close]
BLAST of Spg020301 vs. NCBI nr
Match: XP_022928740.1 (exosome complex component RRP43 [Cucurbita moschata])

HSP 1 Score: 549.3 bits (1414), Expect = 2.4e-152
Identity = 294/348 (84.48%), Postives = 299/348 (85.92%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIP VALNDDGKVVF+SE
Sbjct: 181 -----------------------------------------LQIPFVALNDDGKVVFVSE 240

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           EEGGENFEKE VNKEKRKLKLN +PFSLTCLLHKNYILADP AEEESVMETIVTVVLDSS
Sbjct: 241 EEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSS 300

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDCVALTRQR KELQMILDEAISGMEID
Sbjct: 301 GQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGMEID 304

[Close]
BLAST of Spg020301 vs. NCBI nr
Match: XP_022967860.1 (exosome complex component RRP43 [Cucurbita maxima])

HSP 1 Score: 546.6 bits (1407), Expect = 1.6e-151
Identity = 293/348 (84.20%), Postives = 299/348 (85.92%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMP ICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIPVVALNDDGKVVF+SE
Sbjct: 181 -----------------------------------------LQIPVVALNDDGKVVFVSE 240

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           E+GGENFEKE VNKEKRKLKLN +PFSLTCLLHKNYILADP AEEESVMETIVTVVLDSS
Sbjct: 241 EKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSS 300

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDCVALTRQR KELQMILDEAISGMEID
Sbjct: 301 GQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGMEID 304

[Close]
BLAST of Spg020301 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 545.4 bits (1404), Expect = 3.5e-151
Identity = 288/348 (82.76%), Postives = 300/348 (86.21%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 192

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIPVVALNDDG+VVF+SE
Sbjct: 193 -----------------------------------------LQIPVVALNDDGRVVFVSE 252

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           EEGGENFEKEPVNKEKRKLKLN +PFSLTCLLHK YILADP AEEESVMETIVTVVLDSS
Sbjct: 253 EEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS 312

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDC+ALTRQR KELQ+ILDEAISGMEID
Sbjct: 313 GQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGMEID 316

[Close]
BLAST of Spg020301 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.8e-40
Identity = 98/328 (29.88%), Postives = 165/328 (50.30%), Query Frame = 0 

Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQIRRALALSFNHHLEIASCN 199
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  +                      
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKN---------------------- 184

Query: 200 ELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISEEEGGENFEKEPVNKEKRKL 259
                                 VQ+P V +N++  +  ++              K+K  L
Sbjct: 185 ----------------------VQLPEVTINEETALAEVN-------------LKKKSYL 244

Query: 260 KLNCIPFSLT-CLLHKNYILADPNAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS 319
            +   P + +  +     ++ DP  EEE +    +T+V+D  G+L   +KPGGS L   +
Sbjct: 245 NIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLT-GA 274

Query: 320 SVQDCVALTRQRLKELQMILDEAISGME 347
            +QDC++    R KE++ ++DE I  M+
Sbjct: 305 KLQDCMSRAVTRHKEVKKLMDEVIKSMK 274

[Close]
BLAST of Spg020301 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-39
Identity = 99/327 (30.28%), Postives = 162/327 (49.54%), Query Frame = 0 

Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQIRRALALSFNHHLEIASCN 199
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  +                      
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKN---------------------- 184

Query: 200 ELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISEEEGGENFEKEPVNKEKRKL 259
                                 VQ+P V +N++  +  ++              K+K  L
Sbjct: 185 ----------------------VQLPEVTINEETALAEVN-------------LKKKSYL 244

Query: 260 KLNCIPFSLT-CLLHKNYILADPNAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS 319
            +   P + +  +     ++ DP  EEE +    +TVV D  G+L   +KPGGS L   +
Sbjct: 245 NVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGSGLT-GA 273

Query: 320 SVQDCVALTRQRLKELQMILDEAISGM 346
            +QDC++    R KE+  +LDE I  M
Sbjct: 305 KLQDCMSRAVTRHKEVSKLLDEVIQSM 273

[Close]
BLAST of Spg020301 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-37
Identity = 96/328 (29.27%), Postives = 162/328 (49.39%), Query Frame = 0 

Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQIRRALALSFNHHLEIASCN 199
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  +                      
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKN---------------------- 184

Query: 200 ELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISEEEGGENFEKEPVNKEKRKL 259
                                 VQ+P V +N++  +  ++              K+K  L
Sbjct: 185 ----------------------VQLPEVTINEETALAEVN-------------LKKKSCL 244

Query: 260 KLNCIPFSLT-CLLHKNYILADPNAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS 319
            +   P + +  +     ++ DP  EEE +    +TVV+D  G+L   +KPGGS L   +
Sbjct: 245 NIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGRLCCLHKPGGSGLT-GA 274

Query: 320 SVQDCVALTRQRLKELQMILDEAISGME 347
            +QDC++    R KE++ ++DE    M+
Sbjct: 305 KLQDCMSRAVTRHKEVKKLMDEVFKSMK 274

[Close]
BLAST of Spg020301 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.7e-26
Identity = 82/311 (26.37%), Postives = 144/311 (46.30%), Query Frame = 0 

Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+++ P Q+    L + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQIRRALALSFNHHLEIASCN 199
            + + KAAW+ Y DI CL+ DGS FD A  +  AA                         
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALK----------------------- 196

Query: 200 ELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISEEEGGENFEKEPVNKEKRKL 259
                                 V++P    ++D + V  +             +   R +
Sbjct: 197 ---------------------TVKLPTAVWDEDLERVICA-------------STLTRPV 256

Query: 260 KLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSS 319
           +L+    S +  +  + +LADP  EEE +    +T++L+SS  +V   K GG+ +     
Sbjct: 257 QLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKIIKLGGTHI-QPLL 269

Query: 320 VQDCVALTRQR 331
           ++ C+ + R +
Sbjct: 317 LKKCIEVARSK 269

[Close]
BLAST of Spg020301 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-25
Identity = 79/271 (29.15%), Postives = 128/271 (47.23%), Query Frame = 0 

Query: 38  RPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVD 97
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +AV+
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 98  FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 157
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 158 DADGSLFDAALLSAAAAFSHSAQIRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLG 217
           D DG+LFDA+++ + +A S +                                       
Sbjct: 143 DHDGNLFDASMIGSVSALSIT--------------------------------------- 202

Query: 218 FTHRVQIPVVALNDDGKVVFISEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYI 277
                ++P   + DD               E E + ++   L +N  P S+T      Y+
Sbjct: 203 -----EVPKAEVVDD---------------EVEVMEEDTEPLAINDFPISVTIAKVGEYL 234

Query: 278 LADPNAEEESVMETIVTVVLDSSGQLVSFYK 309
           L DP  EEE +M+T +TV +  SG++ +  K
Sbjct: 263 LVDPCLEEEVIMDTRLTVTVTESGEVCAVQK 234

[Close]
BLAST of Spg020301 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 1.2e-152
Identity = 294/348 (84.48%), Postives = 299/348 (85.92%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIP VALNDDGKVVF+SE
Sbjct: 181 -----------------------------------------LQIPFVALNDDGKVVFVSE 240

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           EEGGENFEKE VNKEKRKLKLN +PFSLTCLLHKNYILADP AEEESVMETIVTVVLDSS
Sbjct: 241 EEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSS 300

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDCVALTRQR KELQMILDEAISGMEID
Sbjct: 301 GQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGMEID 304

[Close]
BLAST of Spg020301 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 7.6e-152
Identity = 293/348 (84.20%), Postives = 299/348 (85.92%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMP ICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIPVVALNDDGKVVF+SE
Sbjct: 181 -----------------------------------------LQIPVVALNDDGKVVFVSE 240

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           E+GGENFEKE VNKEKRKLKLN +PFSLTCLLHKNYILADP AEEESVMETIVTVVLDSS
Sbjct: 241 EKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSS 300

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDCVALTRQR KELQMILDEAISGMEID
Sbjct: 301 GQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGMEID 304

[Close]
BLAST of Spg020301 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.7e-151
Identity = 288/348 (82.76%), Postives = 300/348 (86.21%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIPVVALNDDG+VVF+SE
Sbjct: 181 -----------------------------------------LQIPVVALNDDGRVVFVSE 240

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           EEGGENFEKEPVNKEKRKLKLN +PFSLTCLLHK YILADP AEEESVMETIVTVVLDSS
Sbjct: 241 EEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS 300

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDC+ALTRQR KELQ+ILDEAISGMEID
Sbjct: 301 GQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGMEID 304

[Close]
BLAST of Spg020301 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.7e-151
Identity = 288/348 (82.76%), Postives = 300/348 (86.21%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 192

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIPVVALNDDG+VVF+SE
Sbjct: 193 -----------------------------------------LQIPVVALNDDGRVVFVSE 252

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           EEGGENFEKEPVNKEKRKLKLN +PFSLTCLLHK YILADP AEEESVMETIVTVVLDSS
Sbjct: 253 EEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS 312

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLAYTS+VQDC+ALTRQR KELQ+ILDEAISGMEID
Sbjct: 313 GQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGMEID 316

[Close]
BLAST of Spg020301 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.4e-150
Identity = 287/348 (82.47%), Postives = 300/348 (86.21%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH   
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIPVVALNDDGKVVF+SE
Sbjct: 181 -----------------------------------------LQIPVVALNDDGKVVFVSE 240

Query: 241 EEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSS 300
           EEGGENFEKEPVNKEKRKLKL+ IPFSLTC+LHKN+ILADP AEEES+METIVTVVLD S
Sbjct: 241 EEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLS 300

Query: 301 GQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           GQLVSFYKPGGSVLA+TS+VQDCVALTRQR+KELQ+ILDEAISGMEID
Sbjct: 301 GQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGMEID 304

[Close]
BLAST of Spg020301 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 417.9 bits (1073), Expect = 7.8e-117
Identity = 225/351 (64.10%), Postives = 267/351 (76.07%), Query Frame = 0 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MG+P+AA  DLS+EMEVDAFRR+FP++FFERHL+ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           +GSALAKIGSTTMLAAI+MEVMTPS +SPDEGCIA++FHMPPICSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQ 180
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+   
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSN--- 180

Query: 181 IRRALALSFNHHLEIASCNELSYHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISE 240
                                                    +QIP+VALND+G++V ++ 
Sbjct: 181 -----------------------------------------LQIPIVALNDNGRIVAVTG 240

Query: 241 EEGGEN---FEKEPVNKEKRKLKLNCIPFSLTCLLHKNYILADPNAEEESVMETIVTVVL 300
           E+  +N    EKE VNKEKRKL L  IPFSLTC+LHKNYILADP  EEES+M+T+VTVVL
Sbjct: 241 EKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVL 300

Query: 301 DSSGQLVSFYKPGGSVLAYTSSVQDCVALTRQRLKELQMILDEAISGMEID 349
           DSS Q+VSFYK GG+ LAY+S+++ CV L R+R KEL+ IL E    M+ID
Sbjct: 301 DSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGE----MDID 302

[Close]
BLAST of Spg020301 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-15
Identity = 80/324 (24.69%), Postives = 134/324 (41.36%), Query Frame = 0 

Query: 28  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIE 87
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 88  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 147
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 148 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQIRRALALSFNHHLEIASCNELS 207
           +GK  W  Y+D   + +DG+L DA   +  AA +++A                       
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTA----------------------- 189

Query: 208 YHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISEEEGGENFEKEPVNKEKRKLKLN 267
                             +V +     +D+   + IS+E             E  +   +
Sbjct: 190 ----------------IPKVNVSAEVADDEQPEIDISDE-------------EYLQFDTS 249

Query: 268 CIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSSVQD 327
            +P  +T      + + D  AEEES M + V++ ++ +G +    K  GS L   S + D
Sbjct: 250 SVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSGLD-PSVILD 280

Query: 328 CVALTRQRLKELQMILDEAISGME 347
            +++ +   + L   LD  IS  E
Sbjct: 310 MISVAKHVTETLMSKLDSEISAAE 280

[Close]
BLAST of Spg020301 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-15
Identity = 80/324 (24.69%), Postives = 134/324 (41.36%), Query Frame = 0 

Query: 28  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIE 87
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 88  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 147
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 148 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHSAQIRRALALSFNHHLEIASCNELS 207
           +GK  W  Y+D   + +DG+L DA   +  AA +++A                       
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTA----------------------- 189

Query: 208 YHLGKQRDVADKFLGFTHRVQIPVVALNDDGKVVFISEEEGGENFEKEPVNKEKRKLKLN 267
                             +V +     +D+   + IS+E             E  +   +
Sbjct: 190 ----------------IPKVNVSAEVADDEQPEIDISDE-------------EYLQFDTS 249

Query: 268 CIPFSLTCLLHKNYILADPNAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSSVQD 327
            +P  +T      + + D  AEEES M + V++ ++ +G +    K  GS L   S + D
Sbjct: 250 SVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSGLD-PSVILD 280

Query: 328 CVALTRQRLKELQMILDEAISGME 347
            +++ +   + L   LD  IS  E
Sbjct: 310 MISVAKHVTETLMSKLDSEISAAE 280

The following BLAST results are available for this feature:
BLAST of Spg020301 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023544252.16.4e-15384.77exosome complex component RRP43 [Cucurbita pepo subsp. pepo][more]
KAG7033523.11.4e-15284.48Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022928740.12.4e-15284.48exosome complex component RRP43 [Cucurbita moschata][more]
XP_022967860.11.6e-15184.20exosome complex component RRP43 [Cucurbita maxima][more]
XP_008460772.13.5e-15182.76PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo][more]
BLAST of Spg020301 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q96B265.8e-4029.88Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1[more]
Q9D7531.7e-3930.28Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1[more]
Q2KHU33.5e-3729.27Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1[more]
Q102054.7e-2626.37Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
Q8TYC21.1e-2529.15Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324... [more]
BLAST of Spg020301 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ESF51.2e-15284.48exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE... [more]
A0A6J1HVL57.6e-15284.20exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4... [more]
A0A1S3CEE11.7e-15182.76exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995... [more]
A0A1S3CD661.7e-15182.76exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995... [more]
A0A6J1DFM71.4e-15082.47exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P... [more]
BLAST of Spg020301 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G60080.17.8e-11764.103'-5'-exoribonuclease family protein [more]
AT3G07750.11.0e-1524.693'-5'-exoribonuclease family protein [more]
AT3G07750.21.0e-1524.693'-5'-exoribonuclease family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 48..177
e-value: 1.7E-20
score: 73.9
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 16..347
e-value: 7.5E-78
score: 263.7
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 264..313
e-value: 2.5E-4
score: 21.0
NoneNo IPR availablePANTHERPTHR11097:SF28SUBFAMILY NOT NAMEDcoord: 218..348
coord: 14..178
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 218..348
coord: 14..178
NoneNo IPR availableCDDcd11369RNase_PH_RRP43coord: 21..338
e-value: 3.85739E-108
score: 314.88
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 259..342
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 18..287

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020301.1Spg020301.1mRNA