Spg020272 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020272
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold1: 26126122 .. 26127191 (+)
RNA-Seq Expression	Spg020272
Synteny	Spg020272

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCAAGAAAAGAGAGAGAGAATGAGGAAGAGGAGGTGCCTGTTACCCTTGAAGTACCGAAAACAACGGCGAAGAAAAAGAAATCGCCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGTGCAGAAGGTAGTTGAAGATGTTGCAGCTGTGGCAGTTGAGGAAGGAAATCTGAGGGAACCAGGAGTACAAAACCCAGAGCAGACTGACCCGAGAGTTGCAGATACGGAGGAAGTTCAAGAAGGAAACACAGAGGTAGTTCAAGAAGAGCACAGAGAGGAAGTTAAAAAAAAAAGACCGAGGATACGTAAGAGAAACAGACGGAAGATGTGCAAGAAAAAGGCAATGAACATGTGGAACAAGAGCAGGAGGCTCGAATGGAGGTTATCATGCCGGAAGTGCCACGACGTCGCCGCCAGAAGCAAAAAGCCAGTCGTGTTAAGTTAGCCTGAACTGATACACCCTCGCCGCCAACCACTGATTCTGAGAGAGAAAATGCAGAGAGAGAGGAACATGAGAAAAAAGAGGTCGAAGCCAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTAAGGAGGAAGTTTTGCTCAAACAAAGGGAAGACAAGGGCAAGGGCATTGCTGAAGCATCATCGGAACCAGAAGATAGCGAAACAGAAGAACCAAGGTTGCCGTATCACCGTTTCGTCAACAATCTTGCCAGAGCAAAGTATGCTGAGCTGTTGAAGAGAGACTTCCTGTTTGAGAGAGGATTTAGTGGTGATCTTCCATATTTTCTGCGGGTCGGTATTACGAACCACGGTAGGGAGTTATTTTGTTCCAAGCCTGAATCTGTGAACGCGCATGTAGTATGCGAGTTTTATACAAATATTGACGAGGAAGAGGGTTTCCAAGTTATCGTTCGAGGTGTAAAAGTTGACTGGAGTCTTGGTGCCATTAACGCACTGTATAACCTTCAAGATTTCCCCCACGAAGGATACAATGAGATGGATGTGGCGCCATCTAATGAGAAATTAAGCGATGCTGTTCGGGAAGTTGGTGGTTAA

mRNA sequence

ATGAGAGCAAGAAAAGAGAGAGAGAATGAGGAAGAGGAGGTGCCTGTTACCCTTGAAGTACCGAAAACAACGGCGAAGAAAAAGAAATCGCCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGTGCAGAAGGTAGTTGAAGATGTTGCAGCTGTGGCAGTTGAGGAAGGAAATCTGAGGGAACCAGGAGTACAAAACCCAGAGCAGACTGACCCGAGAGTTGCAGATACGGAGGAAGTTCAAGAAGGAAACACAGAGGTAGTTCAAGAAGAGCACAGAGAGGAAGTTAAAAAAAAAAGACCGAGGATACGTAAGAGAAACAGACGGAAGATGTGCAAGAAAAAGGCAATGAACATGTGGAACAAGAGCAGGAGGCTCGAATGGAGGTTATCATGCCGGAAAGAGGAACATGAGAAAAAAGAGGTCGAAGCCAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTAAGGAGGAAGTTTTGCTCAAACAAAGGGAAGACAAGGGCAAGGGCATTGCTGAAGCATCATCGGAACCAGAAGATAGCGAAACAGAAGAACCAAGGTTGCCGTATCACCGTTTCGTCAACAATCTTGCCAGAGCAAAGTATGCTGAGCTGTTGAAGAGAGACTTCCTGTTTGAGAGAGGATTTAGTGGTGATCTTCCATATTTTCTGCGGGTCGGTATTACGAACCACGGTAGGGAGTTATTTTGTTCCAAGCCTGAATCTGTGAACGCGCATGTAGTATGCGAGTTTTATACAAATATTGACGAGGAAGAGGGTTTCCAAGTTATCGTTCGAGGTGTAAAAGTTGACTGGAGTCTTGGTGCCATTAACGCACTGTATAACCTTCAAGATTTCCCCCACGAAGGATACAATGAGATGGATGTGGCGCCATCTAATGAGAAATTAAGCGATGCTGTTCGGGAAGTTGGTGGTTAA

Coding sequence (CDS)

ATGAGAGCAAGAAAAGAGAGAGAGAATGAGGAAGAGGAGGTGCCTGTTACCCTTGAAGTACCGAAAACAACGGCGAAGAAAAAGAAATCGCCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGTGCAGAAGGTAGTTGAAGATGTTGCAGCTGTGGCAGTTGAGGAAGGAAATCTGAGGGAACCAGGAGTACAAAACCCAGAGCAGACTGACCCGAGAGTTGCAGATACGGAGGAAGTTCAAGAAGGAAACACAGAGGTAGTTCAAGAAGAGCACAGAGAGGAAGTTAAAAAAAAAAGACCGAGGATACGTAAGAGAAACAGACGGAAGATGTGCAAGAAAAAGGCAATGAACATGTGGAACAAGAGCAGGAGGCTCGAATGGAGGTTATCATGCCGGAAAGAGGAACATGAGAAAAAAGAGGTCGAAGCCAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTAAGGAGGAAGTTTTGCTCAAACAAAGGGAAGACAAGGGCAAGGGCATTGCTGAAGCATCATCGGAACCAGAAGATAGCGAAACAGAAGAACCAAGGTTGCCGTATCACCGTTTCGTCAACAATCTTGCCAGAGCAAAGTATGCTGAGCTGTTGAAGAGAGACTTCCTGTTTGAGAGAGGATTTAGTGGTGATCTTCCATATTTTCTGCGGGTCGGTATTACGAACCACGGTAGGGAGTTATTTTGTTCCAAGCCTGAATCTGTGAACGCGCATGTAGTATGCGAGTTTTATACAAATATTGACGAGGAAGAGGGTTTCCAAGTTATCGTTCGAGGTGTAAAAGTTGACTGGAGTCTTGGTGCCATTAACGCACTGTATAACCTTCAAGATTTCCCCCACGAAGGATACAATGAGATGGATGTGGCGCCATCTAATGAGAAATTAAGCGATGCTGTTCGGGAAGTTGGTGGTTAA

Protein sequence

MRARKERENEEEEVPVTLEVPKTTAKKKKSPEEKEAKRRRRQQRAEDQEIVQKVVEDVAAVAVEEGNLREPGVQNPEQTDPRVADTEEVQEGNTEVVQEEHREEVKKKRPRIRKRNRRKMCKKKAMNMWNKSRRLEWRLSCRKEEHEKKEVEAKAREEAEKKAKEEVLLKQREDKGKGIAEASSEPEDSETEEPRLPYHRFVNNLARAKYAELLKRDFLFERGFSGDLPYFLRVGITNHGRELFCSKPESVNAHVVCEFYTNIDEEEGFQVIVRGVKVDWSLGAINALYNLQDFPHEGYNEMDVAPSNEKLSDAVREVGG

Homology

The following BLAST results are available for this feature:

BLAST of Spg020272 vs.


Match Name	E-value	Identity	Description

BLAST of Spg020272 vs.


Match Name	E-value	Identity	Description

BLAST of Spg020272 vs.


Match Name	E-value	Identity	Description

BLAST of Spg020272 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 141..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020272.1	Spg020272.1	mRNA