Spg020218 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020218
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRING/FYVE/PHD zinc finger superfamily protein, putative isoform 1
Locationscaffold1: 28938343 .. 28941543 (-)
RNA-Seq ExpressionSpg020218
SyntenySpg020218
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCAGTGCCATTGACGCTCTATGTGCCGCCGATTCGGAGCCTCAGTCTGTTCGTCGAAACCCTAGAAGATCTTCTCCGTCACACCGCCATTCATACGCTCAGAGCTTATCCTCGCTTTCGCCTCGCCTTCTCTCGCCTCTTCGGCTCTGTATTCAGCGTTTCTTATTCCAGGTAGATTCGATTTGGTTCGATTCGATTCTTCTTCAAGTTGAGCGACTTACTTTGAGGCCTTTTGTTTCGCTACTGCTGGTGTTGTTGTTGTTGTTGTTTGATTTTGGGGATTCGATCGATTCGAATTGTTGGATTTCTGTTTAGGATCTTGAATCTTGAATCTCTCTTCGTTGTTGTACATTGAAGTTCGAGTTTGTTCTGAAATTAGTCGTGATGATGGATTTTCCTTTCTTTCTTGTTCTTCTTTGATTCTGTTTCTGATCCGTTTTAAGCTGTGGATTTTTCAGATTATCTGTTTCTTCGTTTTCTTGTAATTACGTCATGTTGATGCGATTTGTTGAACAGATTAATGAAATCGATTCGATTTTGAGCAAATTTTGTTGGTTTCTTCTCTGGTTTTTTCAGCCTTTCCAATGGGCATGGGCAAAGAAATGGTACCTGCTTTTCAGACTTTTGCTTTTACTTTGAAAAAAACACACAAAAAGAAAAAGGTCAAATCATTTTTCTTCAAATAATTTTATTATTATTATTTTTTTGAAATGACGTTATAAAAGAATGTATATTTACATGGCAAAGTATTTTTTCTAAATAATAAACTTTTGTAATTCCTTGAACAATGGGAAATTTATTTTTAAATTTTAAAATAAATTGATATAAGTATAAGATTTGAATGGCTTTGAACTTCATGATTTATTACATTATGGTTTTTTATTTCTTAAAAATATACATTTTTGTTCCAAAATAAACATTTTGATTTTGATATTATGAAAATGTCTATTTTAATCTCCCGAATTTATTTTAAAAATGTTATTGTTTTTTATTAATGTTATTATTATACTATTTAATATAGCAAAATACTCTCTTTTCTCTCAACTTATGACATTTTTTTTTTAAATTTTTTTCCAAGTATATCAACATTTGTGGGGATTTGAACCTCTGAATTTTTTAGTGGAGGATTTGAACCTTTAATCTTTTTGGTCGAGGACACATGTCATTTAATGCATAGTCGCTTTGGCCAACCCATGACATTCTAGAACATGCATGTGTCCATTGCTAAAACATACGTTTAAAGTCACTTTGTACATCGCCAACAAGAGCATAACTCAAGGCATAAAGTTGTATTGATAACCACGAGGTCTGAGTATCGTATCTTGTGTTTTTAAAGTTGTATCTCGTTTTTCGTTTTTGAGTTGTTCACCAGGAAACTTCACTATGTTAAACAATTATTACCATCATAATTCTCTTTTCATTCCAATAAAGTTTAGGAACTAAACCTGTATTTTACAAAATTGATATTTTTTTTTACCTTGTATTGCAAACGAACATATTTAATAAATAAAATAAGGAAAAAAAAAAAAAAAAGGCATCCACATCCACATCCACATGTTAGTGTCACATGTATGCTAGAGCCAAACCTCTCAAAAGATAACGATTATCCTTATCTTTTATAGAAGGTATGACGTACGATATTTTTAGAAAATCTCAACACAAAAATATCTGTATGAATTGGATTGGAATCTAATAAATTATACAACAATTACAATGGACAGGTTTTTCATTATTATATTTCTAAATAATCACAACGTTATGTAGTTATTTATTTATTTTTTTTTTGGAAGAATACAAACTTGTTAGCAAATAGGGGTCTGTTTGGTAATGTTCTCGTTTCTTATTTCTTGTTTCTAATTTTATTAAGAAATCTAAGCATTTAATATGTATGTTTCTTGTCTCTCATTTTTTTAGAAACACTCCCAAAATTTATATAGAACTTTTGGGAACAACTAAAACTAGTTTCTCCTTTTTTGTTTCCGTTTCCATTTTTTTTCCAAAACATAAATAATAATATAGGTTTATTGTTATTGAATGTATAGGTGTTAGGGTGAAATTCTATTTTTCTTTATTAAAAAGGGGTTTTTACAAGAATGGGCTGAAATCAGCCCATATATTTCACTTTTGTCCAAAAACTTTATAATTTTCATTTCAGTCCAGCCCATTTTTATTAATTGTAGTTCATTTACCAATTTGACCCTTTGATAATCAAAATTAAAAAATAAAAAAAGAAAATACAGAAAAGGAAAAGACGTGATTATATGGCATTTGAAAATAATCCCCCAATTTTCGTCCACAATCGTCCATCACAAACCAAACACCAAGAACAGGTATTTTTCCATCACATACCATTTTTTACATCACAGACCATTTTTCACCCTTTCATTTTCGTCAGTTTTCGTGGTTTGTTGTGATTCTTCCATTTTCGTCCATCACAAAACCGGTATTTTAGAATTCCATACCGCCGAATCTTTATTCCCATATTGGGTATTTAAAAATTCATACCGGGTATTTAAAAATCATACCTGGTATTTTAGAAATCCATACTGGATATTTAACAAGGAATTGTAGAATATGCAAAAAAAAAAAAAAAAAAACCCAGATCTATACGCAAAAAAAAAAATTATTGCAAATTTCAAAATTCATACCGGGTATTTAAAAATTCATACCCAGTATTTAGAAATCATACCGGGTATTTAAAAATGTTGTGTACTGTCAAATTTCAAAGAATGCATGCAAGAGAAGAGCAGAGACAAAATTCTGAAACCAATAATAAAAAATCGTGAGAGAAGACCTCCTATCAACGTCTGTTCATCCCCTTTCAAAAATCAGTAGGTATATAGTGAATTTTTGGATGCTTACGAATACGAATAACCAAGTGATGGGGGGTGATCCCATATGGACTTTTCCATCGGTTAATAACAGCGGTTTGTATAGAGGGAAGATGTTGAGTGGGTTGCATTTCATGAACTTTCTGGCCCCAGTGGCGTTGGTTCCGTGTCAGCAATTCGAGTCAGGCACTGGCGGAGGAAAATTTGATTGTTTGGAAACAAATGAAATTGGATGGCTGTTGGACGTTCTTCGACAGATGCAAAACAAGGTTTTGCGAAATTGGCTAAATTTGAAAATTGAAAAGAATAGGGCAGACAGTGGACAAACACTTAAATGA

mRNA sequence

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCAGTGCCATTGACGCTCTATGTGCCGCCGATTCGGAGCCTCAGTCTGTTCGTCGAAACCCTAGAAGATCTTCTCCGTCACACCGCCATTCATACGCTCAGAGCTTATCCTCGCTTTCGCCTCGCCTTCTCTCGCCTCTTCGGCTCTGTATTCAGCGTTTCTTATTCCAGATTATCTGTTTCTTCGTTTTCTTGTAATTACGTCATGTTGATGCGATTTGTTGAACAGATTAATGAAATCGATTCGATTTTGAGCAAATTTTGTTGGTTTCTTCTCTGGTTTTTTCAGCCTTTCCAATGGGCATGGGCAAAGAAATGCGGTTTGTATAGAGGGAAGATGTTGAGTGGGTTGCATTTCATGAACTTTCTGGCCCCAGTGGCGTTGGTTCCGTGTCAGCAATTCGAGTCAGGCACTGGCGGAGGAAAATTTGATTGTTTGGAAACAAATGAAATTGGATGGCTGTTGGACGTTCTTCGACAGATGCAAAACAAGGTTTTGCGAAATTGGCTAAATTTGAAAATTGAAAAGAATAGGGCAGACAGTGGACAAACACTTAAATGA

Coding sequence (CDS)

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCAGTGCCATTGACGCTCTATGTGCCGCCGATTCGGAGCCTCAGTCTGTTCGTCGAAACCCTAGAAGATCTTCTCCGTCACACCGCCATTCATACGCTCAGAGCTTATCCTCGCTTTCGCCTCGCCTTCTCTCGCCTCTTCGGCTCTGTATTCAGCGTTTCTTATTCCAGATTATCTGTTTCTTCGTTTTCTTGTAATTACGTCATGTTGATGCGATTTGTTGAACAGATTAATGAAATCGATTCGATTTTGAGCAAATTTTGTTGGTTTCTTCTCTGGTTTTTTCAGCCTTTCCAATGGGCATGGGCAAAGAAATGCGGTTTGTATAGAGGGAAGATGTTGAGTGGGTTGCATTTCATGAACTTTCTGGCCCCAGTGGCGTTGGTTCCGTGTCAGCAATTCGAGTCAGGCACTGGCGGAGGAAAATTTGATTGTTTGGAAACAAATGAAATTGGATGGCTGTTGGACGTTCTTCGACAGATGCAAAACAAGGTTTTGCGAAATTGGCTAAATTTGAAAATTGAAAAGAATAGGGCAGACAGTGGACAAACACTTAAATGA

Protein sequence

MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGSVFSVSYSRLSVSSFSCNYVMLMRFVEQINEIDSILSKFCWFLLWFFQPFQWAWAKKCGLYRGKMLSGLHFMNFLAPVALVPCQQFESGTGGGKFDCLETNEIGWLLDVLRQMQNKVLRNWLNLKIEKNRADSGQTLK
Homology
BLAST of Spg020218 vs. NCBI nr
Match: KAE8649764.1 (hypothetical protein Csa_012384 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-23
Identity = 67/88 (76.14%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLL HTAIHT+RAYPRFRLAFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFSVSYSRLSVSSFSCNYVMLMRFVEQI 89
          VF VSYSR ++ S+  + +  + ++E I
Sbjct: 61 VFRVSYSR-NLGSWILDILSSLLYMEVI 87

BLAST of Spg020218 vs. NCBI nr
Match: KAG6603254.1 (hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-23
Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSA PLT YVPPIRSL+LFVETLEDL RHTA HT RAYPRFRLAFSR+FGS
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 VFSVSYSRLSVSSFSCNYVMLMRFVEQINEIDSIL 96
          VF VSYSR    S  CN  +L RF++ I    S+L
Sbjct: 61 VFRVSYSR----SSGCN--LLSRFMKSIEICASLL 89

BLAST of Spg020218 vs. NCBI nr
Match: KAG7037385.1 (hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-23
Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSA PLT YVPPIRSL+LFVETLEDL RHTA HT RAYPRFRLAFSR+FGS
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 VFSVSYSRLSVSSFSCNYVMLMRFVEQINEIDSIL 96
          VF VSYSR    S  CN  +L RF++ I    S+L
Sbjct: 61 VFRVSYSR----SSGCN--LLSRFMKSIELCASLL 89

BLAST of Spg020218 vs. NCBI nr
Match: KAA0060071.1 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa] >TYK29882.1 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 2.7e-23
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLL HTAIHT+RAYPRFRLAFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFSVSYSR 69
           F VSYSR
Sbjct: 61 FFRVSYSR 68

BLAST of Spg020218 vs. NCBI nr
Match: KAG6595630.1 (hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027603.1 hypothetical protein SDJN02_11617, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-20
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LLR +A HTLR YPRFR AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60

Query: 61 VFSVSYSRLS 71
          +F VS SRL+
Sbjct: 61 IFRVSNSRLN 70

BLAST of Spg020218 vs. ExPASy TrEMBL
Match: A0A0A0KZF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.8e-24
Identity = 67/88 (76.14%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLL HTAIHT+RAYPRFRLAFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFSVSYSRLSVSSFSCNYVMLMRFVEQI 89
          VF VSYSR ++ S+  + +  + ++E I
Sbjct: 61 VFRVSYSR-NLGSWILDILSSLLYMEVI 87

BLAST of Spg020218 vs. ExPASy TrEMBL
Match: A0A5A7V2T5 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001360 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLL HTAIHT+RAYPRFRLAFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFSVSYSR 69
           F VSYSR
Sbjct: 61 FFRVSYSR 68

BLAST of Spg020218 vs. ExPASy TrEMBL
Match: A0A6P6AMC9 (uncharacterized protein LOC111310902 isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111310902 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.6e-19
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVET+ED+LR T ++TLRAYPR RL FSR+FGS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 VFSVS 66
          +F +S
Sbjct: 61 IFHLS 65

BLAST of Spg020218 vs. ExPASy TrEMBL
Match: A0A6P6AMB2 (uncharacterized protein LOC111310902 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111310902 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.6e-19
Identity = 62/98 (63.27%), Postives = 72/98 (73.47%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVET+ED+LR T ++TLRAYPR RL FSR+FGS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 VFSVSYSRLSVSSFSCNYVMLMRFVEQINEIDSILSKF 99
          +F        +SSFS   +     VEQ N    +L KF
Sbjct: 61 IF-------HLSSFSHTQLAGSPNVEQRN----LLEKF 87

BLAST of Spg020218 vs. ExPASy TrEMBL
Match: A0A2C9V7E1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-18
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+ FVET+EDLLR TA ++LRAYPRFRLAFSR+F +
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 VFSVS 66
          +F +S
Sbjct: 61 LFRLS 65

BLAST of Spg020218 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-13
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRAYPRFRLAFSRLFGS 60
          MLQLFF +AFSA PLTLY+PPIR L++FVET+E++     +++ R +PR R+A+SRL   
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VFSVS 66
           FS S
Sbjct: 61 FFSSS 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649764.11.2e-2376.14hypothetical protein Csa_012384 [Cucumis sativus][more]
KAG6603254.11.2e-2372.63hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037385.11.2e-2372.63hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0060071.12.7e-2392.65RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo ... [more]
KAG6595630.14.7e-2082.86hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZF75.8e-2476.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1[more]
A0A5A7V2T51.3e-2392.65RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis mel... [more]
A0A6P6AMC95.6e-1980.00uncharacterized protein LOC111310902 isoform X2 OS=Durio zibethinus OX=66656 GN=... [more]
A0A6P6AMB29.6e-1963.27uncharacterized protein LOC111310902 isoform X1 OS=Durio zibethinus OX=66656 GN=... [more]
A0A2C9V7E14.8e-1880.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G52105.17.8e-1355.38unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36616:SF5DIS3-EXONUCLEASE-LIKE PROTEINcoord: 1..66
NoneNo IPR availablePANTHERPTHR36616BNAC07G32700D PROTEINcoord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020218.1Spg020218.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding