Spg019912 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019912
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold5: 28800827 .. 28803657 (+)
RNA-Seq ExpressionSpg019912
SyntenySpg019912
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCAACGACTGAAAACGCAGCAACTCCCTCTTGATTTCTTTGCTGGAAATTTCTTCTTCAAAGACACAATAACCACAGAGGTTACACCGGTATGTCTCTAAGTCTAGGAGGCAAAAGACTTGTGGGAGTCTTTCTCTAAGAGGGAGGCTAGAGAGAATTCTATGGTCTTGTCTTGTGAGTCTAAGAGCAAGAGAAGAGTACTAAACCAATTAGGTCTAGTGTTCTATTTATAGAAGAGAGGCCATGAATAAAATATTCAATTAAATCAATCTTTTCCAAAATTGATTCAATCTTTATTCCTTTTTAATCAATCCAAGATCAATCAATTCCATAATTGATCAATCTTTTCCACAAATGACTAATTACTTCCATAAGTGATTAGATCATTTCCATAAATGATTAATCACTTCCTTAAGTGATTAATTATTTCCATAATTGATTAATTCCCGGCTAATGAATTCTTTAATTAATTAACCACCAATTAAATATCACATATTTAATTTTCGGCCTTGAATTAATTAATTTTGCCCAAATAGATTTTAGGCCTTAAAATTAATTAATTCATATTTGAACTCTTTCAAACTTCCATAAATTTGTTGTGACTCAAATTTATATTAATATTTGAATTTCTTCAAATATTAATTTCTCTCATAATAATATATCAATATATATTATATTGTTTCCCTTAGTAAATTGAACACTTTCAATTTACATTTATTACTTAGTTGCCTCAAATTACTTTATGAGCTACCAGTGGGACCTAATGGACCTGCAGATCAGAAGCTCCAACGATGTGAGATTAATTGGTCAAACTCATTAACCAAATTAATCAATATTCGTTAACTGTGTGTACATTCCACTATAGACTCACAGTTGCACTCTTCTCACTGCAGACATATTTTCTGTGTCCACGGATATAGACCAATATCGACTAGTTAGTCCTTCACGAGTGTCCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCCTAGGTTACTTCTATTTCCTTAAGTATCAGTTCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCATCAAACAGAAAACCCTCTCGTGCCATTGAGAGGGTAGGACCCTTTGTTCAAGACTCAGAGTGACCACTTAAGGAAACACTCATCTGCTTTCCTAAAGTCGGGAAAGAGTGAATTCCATCTTGTACGATTATGTTCCCAACTCCCCACTCGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCGGCGTATTGGCCACTCTCACCCATACAAATCAAAGGACAATCCCTCATAAGCAGGAGTCCATAATCAACTCAGAATTAAGACCAAGTTGTCTAGGTCGTCCTAGTGAAATAGAAAACCAACTAGTTAACGGTGTTATAACAAGTGGTTACTATTTCGTGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTACACGAACACGTTGGATCATAGCATTTGTATCAAATACAAAGTGGGTCGTATCCATAGTGTCACCAGGATAAGGCACCCAGTCTTATCCCTATACTATAGACCCTTTAGGCTGTTTCTTGAACAATGATCCCCATATGTCGCTACATATAGTTCAAGACTCATATTACAGCCTAGGGTGTCTAGTTTATTGGATTACGGTTATTTTAGGCAAAGACAAATATAAAATAACTAATAACATTTAATGGAAAAATATATCAATATTATTTCATTAATATCCGGTCAACGGTTACATTCACTATCTACGAGTTTTAGGGCATAAAACCCAACAATTCTTGATATCACGCGACCTCTTCGTAGAGGTATCAAGGTAAGTTTAGATGAGTCGTTGGGCAGTATCTGGACTCCTATCAAATATGAGAAGATGCTGGATATTTGTAACTACTGTGGTCGTATTGGTCACGAGACGAAGGAGTGTAATTTTTTCTTAGCAAGTGATGGTTCCTCGTCTCGACAACCAGAATATGGTTCATGGATGTCTTTTACAGGACGTTCCTCAAACTTGTTCAGATCTCCGTCGAACAGCCCCATAGGAAGCAATCGATCGATGATGGATGTGTCCCCTAACCAGATTGGATCTTCGCCTCGTAATCTCGTGATAATGAATGGATAGAATCTCAGGTTGGAGGCCTCTCAGCGTTCGTCCCCGAAAACAGGCTCCGGTAGCAAACCCACGGATATCTCGTCGTCGGTGGAGGAGACGGTCGCTGCTCCGATCATGGAAGGGGCTCAACCAATTAATGCTCTTCATGTGGGCTTTAATGGCATTGATTACTCAAAGGTCAAGAAAAAATTAGAGTATGGAAAAGAAACCAAAATTCAAGTGGCTGAAGGTAACGAAATTTTCGTCTTCAAAGCGGAAGGAAGGGATCAGAAACCGTCGATTTTTTCGCATTCTCTATCTTCAAGCAAAGATTTGGTTGAAGGAATACCGGTTCAGCCAACTGGGGTTTATTCTCTGTCCAACCCATCGGTTGGTTTGTCATGCAGCGTGGACCGAACAGGTTTTCATACAGACGCACAGAAAAATGAAGATTGGGCTTCATTGCTATCAAAATCGAACACTGAGATGGGAGAGAAGACAGTGACGGCTTCATACTTGTCGAAGATAGGGCCAAAGCCTGTGAGTTGGAAACGCAGGGCCCCTAAAATGTCGTCTGATCTCAATGGAAGTGGCAATGCAGATAGTCAGAAGAAGCGAATGGGTGAGGGGCTAGCTGGAGTCTCTTTGAAGTGTGCGCGTGCTGAGGAAGATGACACTACAATCTCAACTGAACCATCGGTGGAGGCTGCTGAGCAGCCCCGCCGAGAGCCATGA

mRNA sequence

ATGCTCCAACGACTGAAAACGCAGCAACTCCCTCTTGATTTCTTTGCTGGAAATTTCTTCTTCAAAGACACAATAACCACAGAGGTTACACCGCTACCAGTGGGACCTAATGGACCTGCAGATCAGAAGCTCCAACGATGTATCAAGGTAAGTTTAGATGAGTCGTTGGGCAGTATCTGGACTCCTATCAAATATGAGAAGATGCTGGATATTTGTAACTACTGTGGTCGTATTGGTCACGAGACGAAGGAGTGTAATTTTTTCTTAGCAAGTGATGGTTCCTCGTCTCGACAACCAGAATATGGTTCATGGATGTCTTTTACAGGACGTTCCTCAAACTTGTTCAGATCTCCGTCGAACAGCCCCATAGGAAGCAATCGATCGATGATGGATAATCTCAGGTTGGAGGCCTCTCAGCGTTCGTCCCCGAAAACAGGCTCCGGTAGCAAACCCACGGATATCTCGTCGTCGGTGGAGGAGACGGTCGCTGCTCCGATCATGGAAGGGGCTCAACCAATTAATGCTCTTCATGTGGGCTTTAATGGCATTGATTACTCAAAGGTCAAGAAAAAATTAGAGTATGGAAAAGAAACCAAAATTCAAGTGGCTGAAGGTAACGAAATTTTCGTCTTCAAAGCGGAAGGAAGGGATCAGAAACCGTCGATTTTTTCGCATTCTCTATCTTCAAGCAAAGATTTGGTTGAAGGAATACCGGTTCAGCCAACTGGGGTTTATTCTCTGTCCAACCCATCGGTTGGTTTGTCATGCAGCGTGGACCGAACAGGTTTTCATACAGACGCACAGAAAAATGAAGATTGGGCTTCATTGCTATCAAAATCGAACACTGAGATGGGAGAGAAGACAGTGACGGCTTCATACTTGTCGAAGATAGGGCCAAAGCCTGTGAGTTGGAAACGCAGGGCCCCTAAAATGTCGTCTGATCTCAATGGAAGTGGCAATGCAGATAGTCAGAAGAAGCGAATGGGTGAGGGGCTAGCTGGAGTCTCTTTGAAGTGTGCGCGTGCTGAGGAAGATGACACTACAATCTCAACTGAACCATCGGTGGAGGCTGCTGAGCAGCCCCGCCGAGAGCCATGA

Coding sequence (CDS)

ATGCTCCAACGACTGAAAACGCAGCAACTCCCTCTTGATTTCTTTGCTGGAAATTTCTTCTTCAAAGACACAATAACCACAGAGGTTACACCGCTACCAGTGGGACCTAATGGACCTGCAGATCAGAAGCTCCAACGATGTATCAAGGTAAGTTTAGATGAGTCGTTGGGCAGTATCTGGACTCCTATCAAATATGAGAAGATGCTGGATATTTGTAACTACTGTGGTCGTATTGGTCACGAGACGAAGGAGTGTAATTTTTTCTTAGCAAGTGATGGTTCCTCGTCTCGACAACCAGAATATGGTTCATGGATGTCTTTTACAGGACGTTCCTCAAACTTGTTCAGATCTCCGTCGAACAGCCCCATAGGAAGCAATCGATCGATGATGGATAATCTCAGGTTGGAGGCCTCTCAGCGTTCGTCCCCGAAAACAGGCTCCGGTAGCAAACCCACGGATATCTCGTCGTCGGTGGAGGAGACGGTCGCTGCTCCGATCATGGAAGGGGCTCAACCAATTAATGCTCTTCATGTGGGCTTTAATGGCATTGATTACTCAAAGGTCAAGAAAAAATTAGAGTATGGAAAAGAAACCAAAATTCAAGTGGCTGAAGGTAACGAAATTTTCGTCTTCAAAGCGGAAGGAAGGGATCAGAAACCGTCGATTTTTTCGCATTCTCTATCTTCAAGCAAAGATTTGGTTGAAGGAATACCGGTTCAGCCAACTGGGGTTTATTCTCTGTCCAACCCATCGGTTGGTTTGTCATGCAGCGTGGACCGAACAGGTTTTCATACAGACGCACAGAAAAATGAAGATTGGGCTTCATTGCTATCAAAATCGAACACTGAGATGGGAGAGAAGACAGTGACGGCTTCATACTTGTCGAAGATAGGGCCAAAGCCTGTGAGTTGGAAACGCAGGGCCCCTAAAATGTCGTCTGATCTCAATGGAAGTGGCAATGCAGATAGTCAGAAGAAGCGAATGGGTGAGGGGCTAGCTGGAGTCTCTTTGAAGTGTGCGCGTGCTGAGGAAGATGACACTACAATCTCAACTGAACCATCGGTGGAGGCTGCTGAGCAGCCCCGCCGAGAGCCATGA

Protein sequence

MLQRLKTQQLPLDFFAGNFFFKDTITTEVTPLPVGPNGPADQKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSRQPEYGSWMSFTGRSSNLFRSPSNSPIGSNRSMMDNLRLEASQRSSPKTGSGSKPTDISSSVEETVAAPIMEGAQPINALHVGFNGIDYSKVKKKLEYGKETKIQVAEGNEIFVFKAEGRDQKPSIFSHSLSSSKDLVEGIPVQPTGVYSLSNPSVGLSCSVDRTGFHTDAQKNEDWASLLSKSNTEMGEKTVTASYLSKIGPKPVSWKRRAPKMSSDLNGSGNADSQKKRMGEGLAGVSLKCARAEEDDTTISTEPSVEAAEQPRREP
Homology
[Close]
BLAST of Spg019912 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-07
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 44  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNF-FLASDGSSSRQPEYG 103
           L+R IK+++D  +G  W PI+YE++ D C +CG IGH + +C+  +LA+   S    EYG
Sbjct: 183 LRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYG 242

Query: 104 SWMSFTG 110
            W+ F G
Sbjct: 243 PWLRFVG 249

[Close]
BLAST of Spg019912 vs. NCBI nr
Match: XP_030959413.1 (uncharacterized protein At4g02000-like [Quercus lobata])

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-05
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 44  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSR-QPEYG 103
           L R  ++ LDE +   W   KYEK+ + C +CG + H+ KEC  +LA  GSSS  + EYG
Sbjct: 176 LSRGRRIVLDEDI-ETWVSFKYEKLTNFCYWCGMVSHDEKECEKWLAGKGSSSHAKQEYG 235

Query: 104 SWMSFT 109
           +W+  T
Sbjct: 236 AWLRAT 240

[Close]
BLAST of Spg019912 vs. NCBI nr
Match: XP_023905689.1 (uncharacterized protein LOC112017470 [Quercus suber])

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-04
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 42  QKLQRCIKVSLDESLGSI-WTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQP 101
           Q L RC K+ L E  GS+ W P+KYE++  IC +CG + HE K+C  ++ S G+ +  + 
Sbjct: 173 QPLCRCRKIILSE--GSVWWVPLKYERLRSICYWCGLVSHENKDCELWIKSKGTLTVDKQ 232

Query: 102 EYGSWM 106
           ++G W+
Sbjct: 233 QFGPWI 236

[Close]
BLAST of Spg019912 vs. NCBI nr
Match: XP_030969817.1 (uncharacterized protein LOC115990093 [Quercus lobata])

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-04
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 0 

Query: 59  IWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMS----FTGRSSN 118
           +W   KYEKM + C +CG + H+ KEC  +L+S GS S  Q EYGSW+       G+ S 
Sbjct: 189 VWVSFKYEKMPNFCYWCGMVSHDAKECKVWLSSKGSLSLDQQEYGSWLRADPFSVGKKSF 248

Query: 119 LFRSPSNSPIGSNRSMMDNLR--LEASQRSSPKTGSGSKPTDISSS 158
           +F   +    G   + +   R   E  Q ++P   +G+   DI+SS
Sbjct: 249 MFVPGTGGDFGGEDTNVRTGRETEERIQGAAPPQEAGTNRVDIASS 294

[Close]
BLAST of Spg019912 vs. NCBI nr
Match: CAB4268866.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-04
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 44  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSRQPEYGS 103
           L+R +K+  D SL ++    KYE++ D C  CGRIGH  KEC F  A +  +  +P YGS
Sbjct: 187 LRRVMKLQFDHSLKAV-IEFKYERLPDFCYACGRIGHVVKECKFVGAMEKEAKEKP-YGS 246

Query: 104 WM 106
           W+
Sbjct: 247 WL 246

[Close]
BLAST of Spg019912 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-08
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 44  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNF-FLASDGSSSRQPEYG 103
           L+R IK+++D  +G  W PI+YE++ D C +CG IGH + +C+  +LA+   S    EYG
Sbjct: 183 LRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYG 242

Query: 104 SWMSFTG 110
            W+ F G
Sbjct: 243 PWLRFVG 249

[Close]
BLAST of Spg019912 vs. ExPASy TrEMBL
Match: A0A2N9EV43 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6587 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-05
Identity = 34/79 (43.04%), Postives = 43/79 (54.43%), Query Frame = 0 

Query: 42  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPE 101
           Q L R  KV L    G  W   +YE++ + C +CGRI H  K+C  +L S GS SS Q  
Sbjct: 173 QPLCRGRKVGLG-GKGECWVSFRYERLTNFCYWCGRITHGEKDCEIWLRSRGSLSSDQQP 232

Query: 102 YGSWMSFTGRSSNLFRSPS 120
           YG+WM   G S  + R PS
Sbjct: 233 YGAWMK--GESERMGRHPS 248

[Close]
BLAST of Spg019912 vs. ExPASy TrEMBL
Match: A0A2N9EVP1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6735 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-05
Identity = 33/78 (42.31%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 42  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPE 101
           Q L R  KV L   +G  W   +YE++ + C +CGRI H  K+C  +L S GS SS Q  
Sbjct: 166 QPLCRGRKVGLG-GMGECWVSFRYERLTNFCYWCGRITHGEKDCEIWLRSRGSLSSDQQP 225

Query: 102 YGSWMSFTGRSSNLFRSP 119
           YG+WM   G S  + R P
Sbjct: 226 YGAWMK--GESERMGRHP 240

[Close]
BLAST of Spg019912 vs. ExPASy TrEMBL
Match: A0A2N9HN71 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43499 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-05
Identity = 34/79 (43.04%), Postives = 43/79 (54.43%), Query Frame = 0 

Query: 42  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPE 101
           Q L R  KV L    G  W   +YE++ + C +CGRI H  K+C  +L S GS SS Q  
Sbjct: 139 QPLCRGRKVGLG-GKGECWVSFRYERLTNFCYWCGRITHGEKDCEIWLRSRGSLSSDQQP 198

Query: 102 YGSWMSFTGRSSNLFRSPS 120
           YG+WM   G S  + R PS
Sbjct: 199 YGAWMK--GESERMGRHPS 214

[Close]
BLAST of Spg019912 vs. ExPASy TrEMBL
Match: A0A6J5TXP7 (CCHC-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13519 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 44  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSRQPEYGS 103
           L+R +K+  D SL ++    KYE++ D C  CGRIGH  KEC F  A +  +  +P YGS
Sbjct: 187 LRRVMKLQFDHSLKAV-IEFKYERLPDFCYACGRIGHVVKECKFVGAMEKEAKEKP-YGS 246

Query: 104 WM 106
           W+
Sbjct: 247 WL 246

The following BLAST results are available for this feature:
BLAST of Spg019912 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156185.11.3e-0741.79uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_030959413.12.7e-0542.42uncharacterized protein At4g02000-like [Quercus lobata][more]
XP_023905689.11.4e-0439.39uncharacterized protein LOC112017470 [Quercus suber][more]
XP_030969817.12.3e-0434.91uncharacterized protein LOC115990093 [Quercus lobata][more]
CAB4268866.13.0e-0443.55unnamed protein product [Prunus armeniaca][more]
BLAST of Spg019912 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg019912 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DU556.4e-0841.79uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A2N9EV435.0e-0543.04Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9EVP15.0e-0542.31Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9HN715.0e-0543.04Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A6J5TXP71.5e-0443.55CCHC-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS... [more]
BLAST of Spg019912 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 59..86
e-value: 1.3E-6
score: 28.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..365
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..157
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 72..85
score: 8.729682

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019912.1Spg019912.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding