Spg019909 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019909
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	lectin-like
Location	scaffold5: 36080984 .. 36081283 (-)
RNA-Seq Expression	Spg019909
Synteny	Spg019909

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCTGGATGGTCGGAAGAGCAGGCTGCGCAGCCGCAGCAGCAGCCAGCCACCAGCAGTGCCACCACGAGAAGCGACGAGAACGGCGGCGGAAACTTGAGCAAGAGTTTTATAGAAGAAAAGGAGAAGGTGGTGAGAGGGAAATTAGCAACAGAAGTGAAGCTTGGTCATGGCTTGGAAGCTATTTTGAAAGATGCAGATTTGGCAGTGGACAGATCCTCCTTGGATAAGCTTCATGATCAACTCTATGCTGGGATCTTCTTGAACAAAACAACAAAGGCAAGTCTAACAATATAA

mRNA sequence

ATGGGGTCTGGATGGTCGGAAGAGCAGGCTGCGCAGCCGCAGCAGCAGCCAGCCACCAGCAGTGCCACCACGAGAAGCGACGAGAACGGCGGCGGAAACTTGAGCAAGAGTTTTATAGAAGAAAAGGAGAAGGTGGTGAGAGGGAAATTAGCAACAGAAGTGAAGCTTGGTCATGGCTTGGAAGCTATTTTGAAAGATGCAGATTTGGCAGTGGACAGATCCTCCTTGGATAAGCTTCATGATCAACTCTATGCTGGGATCTTCTTGAACAAAACAACAAAGGCAAGTCTAACAATATAA

Coding sequence (CDS)

ATGGGGTCTGGATGGTCGGAAGAGCAGGCTGCGCAGCCGCAGCAGCAGCCAGCCACCAGCAGTGCCACCACGAGAAGCGACGAGAACGGCGGCGGAAACTTGAGCAAGAGTTTTATAGAAGAAAAGGAGAAGGTGGTGAGAGGGAAATTAGCAACAGAAGTGAAGCTTGGTCATGGCTTGGAAGCTATTTTGAAAGATGCAGATTTGGCAGTGGACAGATCCTCCTTGGATAAGCTTCATGATCAACTCTATGCTGGGATCTTCTTGAACAAAACAACAAAGGCAAGTCTAACAATATAA

Protein sequence

MGSGWSEEQAAQPQQQPATSSATTRSDENGGGNLSKSFIEEKEKVVRGKLATEVKLGHGLEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTKASLTI

Homology

[Close]

BLAST of Spg019909 vs. NCBI nr
Match: XP_038895126.1 (lectin-like [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-25
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1  MGSGWSEE--QAAQPQQQPATSSATTRSDENGGGNLSKS-FIEEKEKVVRGKLATEVKLG 60
          MGSGWSEE  QAAQP QQPAT SA  RS+E+  GN S + F EEKEK+V+GKL  EVKLG
Sbjct: 1  MGSGWSEEQPQAAQPPQQPATVSAALRSNEHDSGNSSNNHFKEEKEKMVKGKLG-EVKLG 60

Query: 61 HGLEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          HG E ILKDADL VDRSSLDKLH+QLYAGIFLNK TK
Sbjct: 61 HGFEDILKDADLPVDRSSLDKLHEQLYAGIFLNKRTK 96

[Close]

BLAST of Spg019909 vs. NCBI nr
Match: XP_004145449.1 (lectin [Cucumis sativus] >KGN66883.1 hypothetical protein Csa_006927 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MGSGWSEEQAAQPQQQPATSSATTRSDENGGGNLSKSFI-EEKEKVVRGKLATEVKLGHG 60
          MG GWSEEQAAQPQ QPA ++A  RS+++ GGN S + + EEKEK V+GKL  E+K+GHG
Sbjct: 1  MGLGWSEEQAAQPQPQPAAANAAVRSNKHRGGNSSNNNLKEEKEKEVKGKLGEEMKVGHG 60

Query: 61 LEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          +E ILKDADL VDRSSLDKL++QLY GIFLNK TK
Sbjct: 61 IEDILKDADLPVDRSSLDKLYEQLYVGIFLNKRTK 95

[Close]

BLAST of Spg019909 vs. NCBI nr
Match: XP_008465530.1 (PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 3.5e-24
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MGSGWSEEQAA--QPQQQPATSSATTRSDENGGGNLSKSFI-EEKEKVVRGKLATEVKLG 60
          MGSGWSEEQAA  QPQQQPA ++A  RS+E+  GN S + + EEKEKVV+GKL  E+KLG
Sbjct: 1  MGSGWSEEQAAQPQPQQQPAAANAAVRSNEHSSGNSSDNNLKEEKEKVVKGKLEEEMKLG 60

Query: 61 HGLEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          HG E ILK ADL VDRSSL+KLH+QLY GIFLNK TK
Sbjct: 61 HGFEDILKYADLPVDRSSLEKLHEQLYVGIFLNKRTK 97

[Close]

BLAST of Spg019909 vs. NCBI nr
Match: XP_023001597.1 (lectin-like [Cucurbita maxima])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 58/95 (61.05%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 1  MGSGWSEEQAAQP-QQQPATSSATTRSDENGGGNLSKSFIEEKEKVVRGKLATEVKLGHG 60
          MGSGWS E+  Q  Q++PA +SA T SD +           +K K VRG L  EVKL HG
Sbjct: 1  MGSGWSAEEDGQALQERPAAASAATGSDGH-----------DKGKAVRGSLGAEVKLEHG 60

Query: 61 LEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          LEAILKDADLA+DRSSLDKLH QL+AGI LNK TK
Sbjct: 61 LEAILKDADLALDRSSLDKLHAQLHAGILLNKATK 84

[Close]

BLAST of Spg019909 vs. NCBI nr
Match: KAG6583794.1 (hypothetical protein SDJN03_19726, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 7.9e-16
Identity = 58/97 (59.79%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 1  MGSGWSEEQAAQP-QQQPATSSATTRSDENGGGNLSKSFIEEKEKVVRGKLATEVKLGHG 60
          MGSGWS E+  Q  Q++PA++SA T SD +           +K K V G L  EVKL HG
Sbjct: 1  MGSGWSAEEDGQGLQERPASASAATGSDGH-----------DKGKAVSGSLGAEVKLEHG 60

Query: 61 LEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTKAS 97
          LEAILKDADLA+DRSSLDKL  QL+AGI LNK TKAS
Sbjct: 61 LEAILKDADLALDRSSLDKLRAQLHAGILLNKGTKAS 86

[Close]

BLAST of Spg019909 vs. ExPASy Swiss-Prot
Match: C0HJV2 (Lectin OS=Luffa acutangula OX=56866 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.2e-04
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 53 EVKLGHGLEAILKDADLAV-DRSSLDKLHDQLYAGIFLNKTTK 95
          EVK+GH LEAILK  D+ V    S  KL+DQ+ AGIFLN  TK
Sbjct: 7  EVKVGHNLEAILKGLDVDVYSVPSFIKLYDQVTAGIFLNNRTK 49

[Close]

BLAST of Spg019909 vs. ExPASy TrEMBL
Match: A0A0A0LYN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G703070 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.7e-25
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MGSGWSEEQAAQPQQQPATSSATTRSDENGGGNLSKSFI-EEKEKVVRGKLATEVKLGHG 60
          MG GWSEEQAAQPQ QPA ++A  RS+++ GGN S + + EEKEK V+GKL  E+K+GHG
Sbjct: 1  MGLGWSEEQAAQPQPQPAAANAAVRSNKHRGGNSSNNNLKEEKEKEVKGKLGEEMKVGHG 60

Query: 61 LEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          +E ILKDADL VDRSSLDKL++QLY GIFLNK TK
Sbjct: 61 IEDILKDADLPVDRSSLDKLYEQLYVGIFLNKRTK 95

[Close]

BLAST of Spg019909 vs. ExPASy TrEMBL
Match: A0A1S3CQJ8 (protein PHLOEM PROTEIN 2-LIKE A1-like OS=Cucumis melo OX=3656 GN=LOC103503156 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.7e-24
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MGSGWSEEQAA--QPQQQPATSSATTRSDENGGGNLSKSFI-EEKEKVVRGKLATEVKLG 60
          MGSGWSEEQAA  QPQQQPA ++A  RS+E+  GN S + + EEKEKVV+GKL  E+KLG
Sbjct: 1  MGSGWSEEQAAQPQPQQQPAAANAAVRSNEHSSGNSSDNNLKEEKEKVVKGKLEEEMKLG 60

Query: 61 HGLEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          HG E ILK ADL VDRSSL+KLH+QLY GIFLNK TK
Sbjct: 61 HGFEDILKYADLPVDRSSLEKLHEQLYVGIFLNKRTK 97

[Close]

BLAST of Spg019909 vs. ExPASy TrEMBL
Match: A0A6J1KH05 (lectin-like OS=Cucurbita maxima OX=3661 GN=LOC111495677 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.9e-17
Identity = 58/95 (61.05%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 1  MGSGWSEEQAAQP-QQQPATSSATTRSDENGGGNLSKSFIEEKEKVVRGKLATEVKLGHG 60
          MGSGWS E+  Q  Q++PA +SA T SD +           +K K VRG L  EVKL HG
Sbjct: 1  MGSGWSAEEDGQALQERPAAASAATGSDGH-----------DKGKAVRGSLGAEVKLEHG 60

Query: 61 LEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          LEAILKDADLA+DRSSLDKLH QL+AGI LNK TK
Sbjct: 61 LEAILKDADLALDRSSLDKLHAQLHAGILLNKATK 84

[Close]

BLAST of Spg019909 vs. ExPASy TrEMBL
Match: A0A6J1CN87 (lectin-like OS=Momordica charantia OX=3673 GN=LOC111012568 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.4e-15
Identity = 57/95 (60.00%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1  MGSGWSEEQAAQPQ-QQPATSSATTRSDENGGGNLSKSFIEEKEKVVRGKLATEVKLGHG 60
          MGSGWSEEQAAQ Q   PAT SA +    +GG                 K+A   +LGHG
Sbjct: 1  MGSGWSEEQAAQSQPPPPATGSAAS----HGG----------------AKVAEVKQLGHG 60

Query: 61 LEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          LEAILKDAD AVDRSS+DKLHDQL+AGIFLNK TK
Sbjct: 61 LEAILKDADSAVDRSSMDKLHDQLHAGIFLNKRTK 75

[Close]

BLAST of Spg019909 vs. ExPASy TrEMBL
Match: A0A6J1CLI9 (lectin-like OS=Momordica charantia OX=3673 GN=LOC111012570 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.4e-15
Identity = 57/95 (60.00%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1  MGSGWSEEQAAQPQ-QQPATSSATTRSDENGGGNLSKSFIEEKEKVVRGKLATEVKLGHG 60
          MGSGWSEEQAAQ Q   PAT SA +    +GG                 K+A   +LGHG
Sbjct: 1  MGSGWSEEQAAQSQPPPPATGSAAS----HGG----------------AKVAEVKQLGHG 60

Query: 61 LEAILKDADLAVDRSSLDKLHDQLYAGIFLNKTTK 95
          LEAILKDAD AVDRSS+DKLHDQL+AGIFLNK TK
Sbjct: 61 LEAILKDADSAVDRSSMDKLHDQLHAGIFLNKRTK 75

The following BLAST results are available for this feature:

BLAST of Spg019909 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895126.1	4.2e-25	75.26	lectin-like [Benincasa hispida]	[more]
XP_004145449.1	1.6e-24	68.42	lectin [Cucumis sativus] >KGN66883.1 hypothetical protein Csa_006927 [Cucumis sa...	[more]
XP_008465530.1	3.5e-24	70.10	PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Cucumis melo]	[more]
XP_023001597.1	1.2e-16	61.05	lectin-like [Cucurbita maxima]	[more]
KAG6583794.1	7.9e-16	59.79	hypothetical protein SDJN03_19726, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg019909 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0HJV2	3.2e-04	60.47	Lectin OS=Luffa acutangula OX=56866 PE=1 SV=1	[more]

BLAST of Spg019909 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYN2	7.7e-25	68.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G703070 PE=4 SV=1	[more]
A0A1S3CQJ8	1.7e-24	70.10	protein PHLOEM PROTEIN 2-LIKE A1-like OS=Cucumis melo OX=3656 GN=LOC103503156 PE...	[more]
A0A6J1KH05	5.9e-17	61.05	lectin-like OS=Cucurbita maxima OX=3661 GN=LOC111495677 PE=4 SV=1	[more]
A0A6J1CN87	9.4e-15	60.00	lectin-like OS=Momordica charantia OX=3673 GN=LOC111012568 PE=4 SV=1	[more]
A0A6J1CLI9	9.4e-15	60.00	lectin-like OS=Momordica charantia OX=3673 GN=LOC111012570 PE=4 SV=1	[more]

BLAST of Spg019909 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019909.1	Spg019909.1	mRNA