Spg019709 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019709
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold5: 30911932 .. 30917995 (-)
RNA-Seq Expression	Spg019709
Synteny	Spg019709

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAGGCGTTGGAAGGGTAATGCATGTGGAATTATCTTAGTAGAGCATGATAATGCATGAGTGTGTTTAGGTTGCTTTAGGGATAATTCAACTGCTTGCAAGCTAAAGAGAACTGAGTTAAACACATGAAAATAAGCAATAAGGATATTCTTAGTTTCAACGCATGTGTTAGACCTAAAACATATGATAATTTTTCACTTAGGCATCAATAGTCTGTCGATTCATTGATATGTGTTGCACTAATACCTTATCTTTCACATGTGGTTGTTGCGGTGAAAGTCTTGATAGCTCATCTCTCACTATTTTCCCTGTAACGCTTTAAATTTTGTTTTTATATCATCACATGTTCATACCGTATCTCAACTTCTTTAATGAGCATGAACACTTTCACATTAGAATAGAATAGAATAAAGATATTTTTACTTCTCACCCTTTTCCTGTGTTCTGACCCTAGAATACTCTAGGTATTACTTGGAAGTGCATAATTTATACATGGATTAATGCACAACAATGACACTTTCATTAATTAATTCCATGCAATAAGAAGTGAATACAGTCGACACGAAGTTTTTGGACTTGTTGCAGGGGAAGGCAACTGTAGTTTTAAAATGTATTTTATTAATTCCTTATTCTGTGTATTGTGCTATCACAACTGAAGGAGTGTTCAAGACACAAGCGGAAGCAATTTGGATCGAAACACTCAAAATTCTTTTAATTTTAGTAATGAAAACATGCAAATATTAAACTGAAAACATATAATAGTTTTCACCAACCTTTTGGCTTGAAATTCTTGCAATTCGTGAATGATTTCTTTGCACGAATCGGTTTTAGACGACCACGAGAGTCTTCCCTGCTAATCTCCGGCCTTAGAACGAGTTGTGGGACTCTAGAACGTGATGAACTTCAAGAGCAAAAAGAAGAACCAAGCTTGAAAGAGTTTATTTTCCTTTGAATTTTTGAGAGAATTTTTCACCACCTCCATCAGCTTGCTTTCACGTTTTTCATCTTCCTTTTAAAGAAGAGATGGTTGAGCTGGTGCTTCCCCAAAGAGACAGCAAAAACACTCATAAAAATGAGTTGTCTTCAATGTGTCTTGTGTAAGCAAAATAAGAATGGAAAATGGGTTTTGGTGTCATGCACAAACTGATTCATGAAATCACTAAAATTGAAAATTGATTTTAAATTTTCAATTAAAATTAATTTTAAAAATAAAATTAATTTATAATTAATTAAACTATTTTAATTAATTATTTTTATTCAATTTAATATCAATATACTAAATTAAATAAATACATCAATCCCAATCTCTCTCAATTCCGGTTTCTAATACAAATCCCTACTCATATCCAAAACGATAAATGTATCGAATACATAATTCTAATATTTAAATCTTATTTAAATATTCTCGACTCTCTCTACTATTAGTTTAATTCACAAATTAAACTTTAGCGTTAAATATATTTGTTGATGGAGAAATTTTGACCAATCACGAATTGCCACGTCGTTACATAAAATTAATGACAAAATTAAAATTAATTAAATTTGGGGCCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAAACAACGTTGGCCAATTATAAATTTATAGAGCCAAATTTCTATTTGATCAATTAATTAAAATTAAATTATTTTGATCAAATTAATTAATTTGACCAATTAATTAAAAATAATAATTATTTGAATCAAATTTGGGTCTTTTAAATGTTTGGGTCATATGGTTTTGGGTCAAATATGAACCAAACCCAAGACTAAATGGATGAGCCTAAGACCAATAAAGCCCAAGCCCAAGTTGTTAGGCCCAAAAGTCACCAGGGCCCAGCTTGCGAGAACTCTATAAATAGAGGAGTTCTCCACCATTTCAAGGGTTCAGATTTTTGGAGCTCTCAACCAGACTTAGAGAATTCAGAGAAATTCCCCCAAAACGGAAGACTGAAGACTCTCTGAAATCTACTAGTTTCCAAGCACTGAACACTTCTTGAAGACTGAAGACTCTTTCAAACTTAGAGGACTTCAAGCTCCAAGAAACCATCGAAGCTTCAGACTCGAGATCAAGCGTTCCAACCCTCGAGTGAAACACATTCACACACAAGAGAGAGAATCAGAGGATTATGTACTAGAGATTGTATACTCACACGCATACAACATTAATACAAATCAAAGTTTATTCCACGTGTCTCATTCATTTGAATTTACGTGTGAACAAATTGGCACACCCAGTGGGACAATCTCTACCTCTCATCTCTTTCTCTTGTTACAAGATCCAACCAACGTGATGGCACCAAAGAAAGCTCCCGCGAAGGTTACAACATCAAGCGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCGCTATTCGAATCTGTCATTCCAACATCTAAGCGGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGACTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAACCGAGAAACGGCTGAGTCTAGCCAGACCCCTGTTGCAGGAAAGAATGATAAGGGGAAAGCTGTCGTGCATGAGGACCAACCGCAACACTCTGCATCAGTTGCCTCTTTGTCTGTCCAACAACTGCAAGACATGATCATGAATTCCATCAGGGCTCAATATGGTGGACCCACTCAAAGTTCTCTCTTGTATTCTAAATCTTATACAAAGAGGGTTGACAATCTCAGACTGCCCACTGGGTATCAGCCTCCCAAGTTCCAACAGTTTGATGGAAAGGGCAACCCAAAGCAGCACATCGCCCACTTTGTTGAAACCTGTGAGAACGCTGGTACTGGAGGAGATTTGCTTGTTAAGCAATTTGTTCAAACATTAAAAGGAAACGCGTTCGATTGGTACACTGACCTAGAGCCTGATACAATTGACAGCTGGGAACAGATGGAGAGAGAATTTCTGAATCGCTTCTACAGTACGAGGCAGATAGTTAGTATGACGGAACTCACGAGCACAAAGCAGCGAAAGGGTGAGCCAGTCATTGACTACACCAACCGTTGGAGAGCCTTGAGTCTCGACTGTAAAGATAGACTCTCCGAGGTGTCCTCTGTTGAGATGTGCACCCAAGGTATGCACTGGGGACTTCTTTATATCTTGCAGGGGATAAAACCCTGAACCTTTGAAGAATTAGCGACTCGTGCTCATGATATGGAGTTGAGCATCGCTAATAGAGGGAATAAAGATCCCGTAGTCCCAGACATGAGAAAAGAAAAGAAAGAAGTCAAAGGCACTGAGAAAGTTATGAAGAGTGCCACGAAAGTGTCCATGGTCGTCAACACGACCCCTGTGAAACTTTCCGCCAAAGGAAGGGAAAACAAAACAAATAAGCGAGTAGAGACAGGCGAGAGACGCCGCCTAACTTTAAAAGAAAGACAAGAAAAAGTATATCCATTTCCAGACTCCGACGTTCCAGATATGTTGGAACAACTGTTGGAGAAGCAGCTAATTGAGCTCCCAGAGTGCAAACGACCAAAAGAGTTAGGGAAAGTCAATGATCCTAACTATTGCAAGTATCACAGAGTCGTTAGTCACACGGTGGAGAAGTGTTTTGTATTAAAGGAGCTAATCCTTAAATTGGCTCGCGAGAAGAGAATTGAGTTAGACCTTGATGAGGTGGCTCAGACGAATCATGCAACAATAGCGGCAAATGTAAGGGATCAACTTCCCCTAATCTCCTCATGTGATTATGAAGAAAAGTTGATTCAATTTGGGACCCTTGATCCCATAGTGGTTCAATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATATTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCATTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTTTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAAGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGCATACTTCCCAAGGTACTTTCTCGATGATAGTCAAGAAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTCTGATGGTACAAACATCCCAACCTCCGAGGCACGCACATGTGCTTCGTGTTGCATGTCTATCGGATTTTCTGATGAAGATTTGTTGCTAGGGTCAAAGCCACACAATAGACCTCTATTCGTCTCAGGATACATTCAAGAACAAAGGGTTAGTCGGATCCTCATCGATGATGGATCAACTGTCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTTGATGGAGGAACTATCAAATAGTAAGTTGGTGATCCAAGGCTTCAATCAGGGTGGACAACGGGCAATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGCAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCCACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTTATCTGAAGAATGAAAACACAGGGGAAACCATACCGGCAGAAATCCCCTTGATAAAAAAGAATGATAAATTCGATTTAGAGCCACAGGCAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGTGAAACCTAAGGTTTTGTAAAGGATGAGAAATGTTCAAATTCGCCTATCCTACCATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGACGTTGAAATTTTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCCGAGGATGATAAGATAAAAGCGATCCTTCCTGACAAACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCAAAAACAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGAAAGATTTGAGCTCTCTGCAACGCAGAGGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTGGAAGAGGTTGATGACTCAAAGGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCACATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAATGTCAATGAAGCGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTTAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAGAAGAACTATCTGCTTCATCGATTTCTCACCGATTTCAGTATGAGGATGCGATGAAAAATGAAAAGATCACGAAGGCTGAAGCGACGTGA

mRNA sequence

ATGCTAAGGCGTTGGAAGGGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCGCTATTCGAATCTGTCATTCCAACATCTAAGCGGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGACTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAACCGAGAAACGGCTGAGTCTAGCCAGACCCCTTTGATTCAATTTGGGACCCTTGATCCCATAGTGGTTCAATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATATTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCATTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTTTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAAGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGCATACTTCCCAAGGTACTTTCTCGATGATAGTCAAGAAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCAGAGCCACAGGCAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGTGAAACCTAAGAGGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTGGAAGAGGTTGATGACTCAAAGGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCACATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAATGTCAATGAAGCGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTTAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAGAAGAACTATCTGCTTCATCGATTTCTCACCGATTTCAGTATGAGGATGCGATGAAAAATGAAAAGATCACGAAGGCTGAAGCGACGTGA

Coding sequence (CDS)

ATGCTAAGGCGTTGGAAGGGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCGCTATTCGAATCTGTCATTCCAACATCTAAGCGGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGACTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAACCGAGAAACGGCTGAGTCTAGCCAGACCCCTTTGATTCAATTTGGGACCCTTGATCCCATAGTGGTTCAATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATATTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCATTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTTTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAAGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGCATACTTCCCAAGGTACTTTCTCGATGATAGTCAAGAAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCAGAGCCACAGGCAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGTGAAACCTAAGAGGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTGGAAGAGGTTGATGACTCAAAGGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCACATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAATGTCAATGAAGCGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTTAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGATGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAGAAGAACTATCTGCTTCATCGATTTCTCACCGATTTCAGTATGAGGATGCGATGAAAAATGAAAAGATCACGAAGGCTGAAGCGACGTGA

Protein sequence

MLRRWKGIEIREDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKRSKDTLNPDVMSVMMTDIDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGSQEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKRKAKFQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAAYFPRYFLDDSQEEALETVTCHIVDVVEDDDVPASSSGTMAEPQADARKEAVEDVNTSDLKKGEASTSLVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRLSVTTRRDKEELSASSISHRFQYEDAMKNEKITKAEAT

Homology

[Close]

BLAST of Spg019709 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 1.0e-28
Identity = 84/193 (43.52%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 283  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
            L   ++KLL+EG+++P +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  KEKE  
Sbjct: 842  LSSTQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGD 901

Query: 343  DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
             QRTS F  I P VAR  VF+RL++ E E +  Q T++  R   F+RL+M    E+    
Sbjct: 902  GQRTSAFDRISPHVARTPVFERLSMTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQ 961

Query: 403  TPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL-----------SVTTRRDKEEL 462
                TRPSAF+RL+M      +    +   RP +F RL           S+ T++ KE  
Sbjct: 962  AWMTTRPSAFERLSM------AKKKNVQTPRPPIFNRLRDEGSHVQTGSSIDTKK-KEST 1021

Query: 463  SASSISHRFQYED 465
            S +S+  R ++ D
Sbjct: 1022 SRASVWCRIKHTD 1027

[Close]

BLAST of Spg019709 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-08
Identity = 43/117 (36.75%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 79  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGS 138
           E+K+ L ++ V + +     + ++          +  L+QFGT +P+VVQF +E   + S
Sbjct: 352 EKKVELNLEEVAQTNHAAVTIMSETFLPRLIFEQRESLVQFGTFEPVVVQFHQEVAPEDS 411

Query: 139 QEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKRKAKFQKKKGKKKSRRSK 196
           +EK  SIE+++EGW +V RRKK+K +  +KESR +R+ +R  K +K K KKK+++ K
Sbjct: 412 REKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFYRNYRRGNKAEKNKKKKKTQKLK 468

HSP 2 Score: 137.5 bits (345), Expect = 3.0e-28
Identity = 73/134 (54.48%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 283 LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
           L   ++KLL+EG+S+P +RKGLGYKSPEP+RI ++GK KV D NHIT+EE D++  KE  
Sbjct: 25  LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGD 84

Query: 343 DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
           +QR SVF  IRP VAR +VF+RL++ EAE E  Q   +  R  VFRRL+     EEST  
Sbjct: 85  NQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFRRLTTTPIKEESTCH 144

Query: 403 TPNVTRPSAFQRLN 417
               TRPSAF+RL+
Sbjct: 145 ALTTTRPSAFERLD 158

[Close]

BLAST of Spg019709 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-28
Identity = 84/192 (43.75%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 283  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
            L   ++KLL+EG+S+P +RKGLGYKSPEP+RI ++GK KV D NHIT+EE D++  KE  
Sbjct: 1051 LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGD 1110

Query: 343  DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
            +QR SVF  IRP VAR +VF+RL++ EAE E  Q   S  R  VFRRL+     EEST  
Sbjct: 1111 NQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFRRLTTTPIKEESTCH 1170

Query: 403  TPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELS 462
                TRPSAF+RL +      S    +   R  +F  L          S    + KE +S
Sbjct: 1171 ALTTTRPSAFERLGV------SKKKNVQAPRAPIFNHLGDKGSHDNIDSNIDTKKKEPMS 1230

Query: 463  ASSISHRFQYED 465
               +  R ++ D
Sbjct: 1231 RVKVWRRIKHTD 1236

[Close]

BLAST of Spg019709 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 5.7e-19
Identity = 65/125 (52.00%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 4   RWKGIEIREDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKRSKDTLNPDVMS 63
           R KGI I+      A+A  I K + ES K  + +K+NPL+      S RS    +PDVMS
Sbjct: 25  RSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMS 84

Query: 64  VMMTDIDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLD 123
           VMM D+  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAESSQTP+++     
Sbjct: 85  VMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKG 144

Query: 124 PIVVQ 129
             VVQ
Sbjct: 145 KNVVQ 148

HSP 2 Score: 93.2 bits (230), Expect = 6.5e-15
Identity = 57/172 (33.14%), Postives = 100/172 (58.14%), Query Frame = 0


Query: 79  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGS 138
           E+++ L ++ V + +     + ++  +       +  L+QFGT +PIVVQF +E + +  
Sbjct: 503 EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 139 QEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKRKAKFQKKKGKKKSRRSKPVM 198
           Q +   IE+++EGW +V  RKK++    ++ESR +++ +R  K QK K KKK+ + K V 
Sbjct: 563 QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

Query: 199 EESEDFFCPPQPITLAAYFPRYFLDDSQEEALETVTCHIVDVVEDDDVPASS 251
            E  +F  P + +TLA + P+ FL D Q+E  E V CH ++  E++ +P  S
Sbjct: 623 NEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRS 674

HSP 3 Score: 136.7 bits (343), Expect = 5.1e-28
Identity = 84/192 (43.75%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 283 LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
           L   ++KLL+EG+S+P +RKGLGYKSPEP+RI ++GK KV D NHIT+EE D++  KE  
Sbjct: 213 LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGD 272

Query: 343 DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
           +QR SVF  IRP VAR +VF+RL++ EAE E  Q   S  R  VFRRL+     EEST  
Sbjct: 273 NQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFRRLTTTPIKEESTCH 332

Query: 403 TPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELS 462
               TRPSAF+RL +      S    +   R  +F  L          S    + KE +S
Sbjct: 333 ALTTTRPSAFERLGV------SKKKNVQAPRAPIFNHLGDKGSHDNIDSNIDTKKKEPMS 392

Query: 463 ASSISHRFQYED 465
              +  R ++ D
Sbjct: 393 RVKVWRRIKHTD 398

[Close]

BLAST of Spg019709 vs. NCBI nr
Match: XP_031737045.1 (uncharacterized protein LOC116402134 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-27
Identity = 83/192 (43.23%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 283 LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
           L   ++KLL+EG+S+P +RKGLGYKSPEP+RI ++GK KV D NHIT+EE D++  KE  
Sbjct: 426 LSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGD 485

Query: 343 DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
           +QR SVF  IRP VAR +VF+RL++ EAE E  Q   +  R  VFRRL+     EEST  
Sbjct: 486 NQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFRRLTTTPIKEESTCH 545

Query: 403 TPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELS 462
               TRPSAF+RL +      S    +   R  +F  L          S    + KE +S
Sbjct: 546 ALTTTRPSAFERLGV------SKKKNVQAPRAPIFNHLGDKGSHDNIDSNIDTKKKEPMS 605

Query: 463 ASSISHRFQYED 465
              +  R ++ D
Sbjct: 606 RVKVWRRIKHTD 611

[Close]

BLAST of Spg019709 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.0e-29
Identity = 84/193 (43.52%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 283  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
            L   ++KLL+EG+++P +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  KEKE  
Sbjct: 842  LSSTQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGD 901

Query: 343  DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
             QRTS F  I P VAR  VF+RL++ E E +  Q T++  R   F+RL+M    E+    
Sbjct: 902  GQRTSAFDRISPHVARTPVFERLSMTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQ 961

Query: 403  TPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL-----------SVTTRRDKEEL 462
                TRPSAF+RL+M      +    +   RP +F RL           S+ T++ KE  
Sbjct: 962  AWMTTRPSAFERLSM------AKKKNVQTPRPPIFNRLRDEGSHVQTGSSIDTKK-KEST 1021

Query: 463  SASSISHRFQYED 465
            S +S+  R ++ D
Sbjct: 1022 SRASVWCRIKHTD 1027

[Close]

BLAST of Spg019709 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-08
Identity = 43/117 (36.75%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 79  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGS 138
           E+K+ L ++ V + +     + ++          +  L+QFGT +P+VVQF +E   + S
Sbjct: 352 EKKVELNLEEVAQTNHAAVTIMSETFLPRLIFEQRESLVQFGTFEPVVVQFHQEVAPEDS 411

Query: 139 QEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKRKAKFQKKKGKKKSRRSK 196
           +EK  SIE+++EGW +V RRKK+K +  +KESR +R+ +R  K +K K KKK+++ K
Sbjct: 412 REKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFYRNYRRGNKAEKNKKKKKTQKLK 468

HSP 2 Score: 134.4 bits (337), Expect = 1.2e-27
Identity = 78/175 (44.57%), Postives = 105/175 (60.00%), Query Frame = 0


Query: 283 LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
           L   ++KLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  +EKE  
Sbjct: 289 LSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGD 348

Query: 343 DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
           +QRTS F  I P VARA VF+RL++ EA+ +  Q                         S
Sbjct: 349 NQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQ-------------------------S 408

Query: 403 TPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRLSVTTRRDKEELSASSIS 458
           T N+ R SAFQRL +   EE+    T   T+PS F+RLS+T +++ +   A  I+
Sbjct: 409 TSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAPIIN 438

[Close]

BLAST of Spg019709 vs. ExPASy TrEMBL
Match: A0A5A7UMH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002660 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-27
Identity = 78/176 (44.32%), Postives = 103/176 (58.52%), Query Frame = 0


Query: 283 LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
           L   K+KLL+EG+++P +RKGLGYKSPEP+RI  +GK KV D NHITV+EVD  +EKE  
Sbjct: 258 LSSTKKKLLREGHAIPMSRKGLGYKSPEPIRITIKGKEKVVDNNHITVKEVDSMEEKEGD 317

Query: 343 DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
            QRTS F  I P V RA VF+RL++ EAE +  Q                         S
Sbjct: 318 SQRTSAFDRISPHVTRAPVFERLSMTEAERKDHQ-------------------------S 377

Query: 403 TPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRLSVTTRRDKEELSASSISH 459
           T NV + SAFQRL +   EE+        T+PS F+RLS+T +++ +   A  I+H
Sbjct: 378 TSNVDQRSAFQRLTITFKEEKGICQASITTKPSAFERLSITKKKNAQTPRAPIINH 408

[Close]

BLAST of Spg019709 vs. ExPASy TrEMBL
Match: A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-27
Identity = 67/135 (49.63%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 283 LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
           L   ++KLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D+NHIT++E D  +EKE  
Sbjct: 431 LSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITLKEADSMEEKEGD 490

Query: 343 DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
            QRTS F  I P VARA VF++L++ EAE +  Q T++  R   F+RL++   +E+    
Sbjct: 491 SQRTSAFDRISPHVARAPVFEKLSMTEAERKDHQSTSNLDRRSAFQRLTITFKEEKGICQ 550

Query: 403 TPNVTRPSAFQRLNM 418
           T   T+PSAF+RL++
Sbjct: 551 TSMTTKPSAFERLSI 565

[Close]

BLAST of Spg019709 vs. ExPASy TrEMBL
Match: A0A5D3D7W3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1539G00020 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.8e-26
Identity = 76/187 (40.64%), Postives = 111/187 (59.36%), Query Frame = 0


Query: 283 LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESV 342
           L   ++KLL+EG+ +P +RKGLGYKSPEP+RI ++GK KV D N IT++EVD  +EKE  
Sbjct: 107 LSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITKKGKEKVVDNNRITIKEVDSMEEKEGD 166

Query: 343 DQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFS 402
            QRTS F  I P VA A VF+RL++ +AE +  Q T++  R   F+RL+M    E+    
Sbjct: 167 SQRTSAFDRISPHVAHAPVFERLSMTKAERKDHQSTSNLDRRSAFQRLTMTFKKEKGICQ 226

Query: 403 TPNVTRPSAFQRLNMPIGEEEST-----FSTLDVTRPSVFQRLSVTTRRDKEELSASSIS 462
               TRP  F+RL++   +   T      + L+   P V    S+ T++ KE  S +S+ 
Sbjct: 227 ASMTTRPLTFERLSIAKKKNAQTPRAPIINRLEDGAPRVQTDSSIDTKK-KESTSRASVW 286

Query: 463 HRFQYED 465
            R ++ D
Sbjct: 287 RRIKHID 292

The following BLAST results are available for this feature:

BLAST of Spg019709 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042067.1	1.0e-28	43.52	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos...	[more]
KAA0042067.1	4.5e-08	36.75	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos...	[more]
XP_031735972.1	5.1e-28	43.75	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031735972.1	5.7e-19	52.00	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737045.1	1.1e-27	43.23	uncharacterized protein LOC116402134 [Cucumis sativus]	[more]

BLAST of Spg019709 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg019709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJZ7	5.0e-29	43.52	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TJZ7	2.2e-08	36.75	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UMH1	1.6e-27	44.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UD46	2.7e-27	49.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7W3	8.8e-26	40.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg019709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019709.1	Spg019709.1	mRNA