Spg019634 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019634
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Locationscaffold5: 30205997 .. 30209849 (+)
RNA-Seq ExpressionSpg019634
SyntenySpg019634
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAAGTAGCAGAAGATGCACGTACTCTCTCTAAAGTCATAGCACCTACACAGCCGAATAGCAAGAATGTGCTCAAGTTTCTAGGAAAACTTCGTATAAGTTTAGAGTATTGGGGGCAATTTTATTAACTTTTTACTTTAGTTTATGTTTTATTTAGATAGTTGAAATATCTTGTAATTTAATTTTGCACAAATTTTGCTACTACATTGTTTTATCATTTTCCAATTTAATATCAAGGCCATTTTTATTTTCATTTTTCTTTTCCTCTTCAATTGTTTAAATGTTTCGTTTTGTCTTTCTCTTTTCTTACACTAAAATCTCTTTTCATTAAAAATATAAACAGAATCATAAGATAGCTCGGTCACCTCGAATCCACCGCACCTACGTCACAAGATACAGGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTAGATTTTCACTACCTACAGAGGTACCCCCCAAGGTGACCATTACAGTTCCCAATTTAGATGATCCTGAAATCAGAAAAGAGCTAACGGGAGGTGAGAAAGTCTCTTCTAGTGAAAAGCTTGAAGTCTTGGAGGAAAGGTTAAGGGCAGTAGAAGGAACAAACGTCTTCGAAAATATAGATGCGACCAAGCTATGCTTGGTACCAGATGTAATCCTCCCTCCAAAATTCAAGGTGCCCGAGTTTGAAAAGTATGATGGAGCATCATGTCCTAAAAACCATCTCATCATGTATTGCAGGAAGATGGCAGCATACGTCCAAAATGACAAGCTGTTAATTCACTGCTTCCAGGACAGTCTTACTGGTCCAGCGTCTCGATGGTATATGCAGTTAGACAGCACTCATATATGTTCATGGAAGAATCTAGCCGATTCATTTTTAAAGCAATATAAGCACAACATAGATATGGCTCCTGACCGCCTAGACCTCCAGAGGATGGAAAAGAAGAGCACAGAAAGCTTTAAAGAGTATGCCCAAAGGTGGAGGGATATTGCTGCTCAGGTGCAACCACCTTTAGCCGATAAGGAGTTGTCGACCATGTTTATTAATACTCTCAAATCTCCTTTCTACGATAAGATGATTGGGAGTGCCTCTACCAATTTCTCTGACATAATGACAATTGGAGAGAGAATCGAGTACGGAATTAAGCATGGAAAGATAACTGATACGGCTGGATCATCGACAGCGAAAAAGGCGGTTCCATCGAAGAAAAAAGAGGGGGAAGTTCAAATGATTGGTTTTAATTCAAGACAACCATACCCTAATGCCGGAGTGCCACAATATCACTATCCACCTCCATATGTTTACCCTCAACCCTATATCAATAATACGTCAGCCCAATACTCATCCCCTTACGTCCAAAATCCTCGTCCTACTCAAGGCTACCAGCCTCGAAATCAACAGAACACTCCTTATGTCCAAGGACACCAAAACAATAAAGGCGTCCGTAGACAGACTCATTTTGATCCGATTCCGATGACATATACCGAACTTCTACCCCAACTCTTCCAGAATAATCAGCTGGCACCCGTGCCAATGGACCCAGTAAAGCCACCTTACCCAAAGTGGTATGACCCAAATGCCCATTGCGACTACCATGCAGGAGCAATTGGACATTCCACTGAAAACTGTACTGCACTCAAGCATAGGGTGCAAGCATTGATCAAGGCAGGATGGTTGAATTTCAAGAAAGAAAATGGTCCAGATGTCAACAACAATCCTCTGCTAAACCATCAGAATGCACAAGTAAATGCGATAGAGGTTCGTGGAACTGATTTGAAAAAGAATGCTAAGAGCGTAGTGACTCCCATGGGAGAACTATTCGAAATATTATTCAATAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATGACACTGGGGCAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAGAATGCTCAAGGTTTTCTCTCAAGCCAAAACCGTTAACAATATCTTATCGCGAGAAGCCCAGTACCCCAAATTCCAAGCCAAGACCGATTACCATCCAGATTCCGACTCCCTTTGAATATCAAAGTTCAAAAGCAGTACCTTGGAATTATGAATACAAGGTAACTGTTGGTTCTGAACCCCTTCCAATCCATAATATCAGTGGGATAGGAGGTCTAACACGAAGCGGGAAGTGCTATACACCAGAAGACCTATTGAAACCCAAGGGTAAAGAAAAAGGAAAGGCCAAGATCACTGAAGATATCAAGGAAAAAACAGAAGAGTCCATTGCAGTGAAGAACCTGGATGTTAAACAGCCAGCATCTGAAGAGGACATCCAAGAATTTTTGAAGTTGGTTAAGCAAAGTGATTATAAAGTGGTTGAACAGTTAGGTCGAACCCCTGCAAAGATTTCCATATTGGCTTTGTTATTGGCTTCAGATACGCATCGTAGGACCTTGTTGGACATATTGAATCAAACTTATGTTCCGCAAGATATTACGGTGGACAACTTGGATAACATCGTTGGAAACATAACTGCATCCAGTTCAGTAACTTTCACAGATGATGAGTTACCACCAGAAGGCACCGGACACACTAAAGCCTTGCACATTACAGTTAAGTGCAAAAATTTTGCTGTGGCAAAAGTTCTAGTTGATAATGGTTCCTCCTTGAACATAATGCCTAAATCCACGTTGGAGAAATTGCCTGTTGATATTTCTCATGTAAGACCCAGCACTATGATCGTACGAGCTTTTGATGGGGCACGTAGTGAAGTTGTTGGAGACATAGAAGTGCCCATTCAGATAAGTCCATGCACCTTCGATATAACCTTTCAGGTTATGAACATTAATTCGGCCTACAGCTTCTTGTTAGGGCGTCCCTGGATTCACTCAGCTGGAGTGGTCCCATCATCATTACACCAAAAACTTAAATTTGTGGTCGACCGCAAACTAGTGATCATATCTGGACAAGAGGATATCTTAGTGTCAAGACCCTCCTCAATGCCCTACATAGAAGCAACAGAAGAGGTTTTTGAGTCATCATTTCAAGCTTTTGAGATTGCAAATGCCACAACTTTATACGGAGAGATAGGGAAAATGGAGCTGCAACTTTCAAAACTCTCCTTAGCAGGAAACAACCAAAGCCTCGAAAATTTGCTGAATATGTCGAAAAATATGAAGAGGTTTGGTTTGGGATATAAATCAAGCAAAAAGATATGATTAAAGCACACAGACAGGAGAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCAAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAAAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA

mRNA sequence

ATGCTTACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAAGTAGCAGAAGATGCACGTACTCTCTCTAAAGTCATAGCACCTACACAGCCGAATAGCAAGAATGTGCTCAAGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTAGATTTTCACTACCTACAGAGAATGCTAAGAGCGTAGTGACTCCCATGGGAGAACTATTCGAAATATTATTCAATAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATGACACTGGGGCAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAGAATGCTCAAGACAGGAGAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCAAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAAAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA

Coding sequence (CDS)

ATGCTTACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAAGTAGCAGAAGATGCACGTACTCTCTCTAAAGTCATAGCACCTACACAGCCGAATAGCAAGAATGTGCTCAAGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTAGATTTTCACTACCTACAGAGAATGCTAAGAGCGTAGTGACTCCCATGGGAGAACTATTCGAAATATTATTCAATAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATGACACTGGGGCAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAGAATGCTCAAGACAGGAGAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCAAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAAAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA

Protein sequence

MLTQIRRVTRRADEVAEDARTLSKVIAPTQPNSKNVLKTRIMEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRPLYNIPVEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMVQLPQYGEVDIIEECSRQEREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIMAIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK
Homology
[Close]
BLAST of Spg019634 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 2.8e-14
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 0 

Query: 110 VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGV 169
           V ++P P  +N Q+           ++ A  + TPM ELFEIL  +GY+ VE L  +L  
Sbjct: 430 VSKNPLPNHQNVQINAIECQEIESKSKVA-DIRTPMVELFEILLGSGYVSVEYLCPNLKY 489

Query: 170 RAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMVQLPQYGEVDIIEEC 229
           + YD+SL C +  GAKGHS++QC  FR+KVQELLDS  LTV+       Q   ++I+E+ 
Sbjct: 490 KGYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANS----HQKKGINIVEDV 548

Query: 230 SRQE 234
           S  E
Sbjct: 550 SVAE 548

[Close]
BLAST of Spg019634 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-13
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 0 

Query: 143 TPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQEL 202
           TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +  GAKGHS++QC  FR+KVQEL
Sbjct: 455 TPKEELFEILLGSGYVSVEYLCPNLKYKEYDESLTCPFHAGAKGHSLEQCNSFRMKVQEL 514

Query: 203 LDSHFLTV--SQKMVQLPQYGEVDIIEECSRQEREKRLARLESREP 247
           LDS  LTV  S +   +    +V + E  S   + KRL    S +P
Sbjct: 515 LDSKILTVANSHQKKGINVVEDVSVAEGSSDALKPKRLTIFYSEKP 560

[Close]
BLAST of Spg019634 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-09
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 42  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------P 101
           ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            P
Sbjct: 1   MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60

Query: 102 PIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPVH 127
           P+R   EG  P+   Y PLY++P+ Q+P  F K  +Q+P +
Sbjct: 61  PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQQIPTN 101


HSP 2 Score: 87.8 bits (216), Expect = 1.8e-13
Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 0 

Query: 110 VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGV 169
           V  +P P   N Q+           ++ A  + TPM ELFEIL  +GY+ VE L  +L  
Sbjct: 365 VSNNPLPNHXNVQINAIECQEIESKSKVA-DITTPMEELFEILLGSGYVSVEYLCPNLKY 424

Query: 170 RAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGE 229
           + YD+SL C +  GAKGH+++QC  FR+ VQELLDS  LTV+         +V+     E
Sbjct: 425 KGYDESLTCPFHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKGINVVEDVSVAE 484

Query: 230 VDIIEECSRQEREKRLARLESREP 247
             I E  S   + KRL    S +P
Sbjct: 485 GSIAEGSSDALKPKRLTIFYSEKP 507

[Close]
BLAST of Spg019634 vs. NCBI nr
Match: XP_022155744.1 (uncharacterized protein LOC111022791 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-13
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 0 

Query: 233 EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYL 292
           E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYL
Sbjct: 453 EKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQVGPFVYL 512

Query: 293 CPEDFELNNWTVMELPSFVNEISK 316
           CP+ FEL+NW+V+ELPSFVN   K
Sbjct: 513 CPDGFELSNWSVIELPSFVNNKXK 536

[Close]
BLAST of Spg019634 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-12
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 0 

Query: 233  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYL 292
            E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYL
Sbjct: 1037 EKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQVGPFVYL 1096

Query: 293  CPEDFELNNWTVMELPSFVNEIS 315
            CP+ FEL+NW+V++LPSFVN  S
Sbjct: 1097 CPDGFELSNWSVIKLPSFVNNKS 1119

[Close]
BLAST of Spg019634 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 0 

Query: 110 VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGV 169
           V ++P P  +N Q+           ++ A  + TPM ELFEIL  +GY+ VE L  +L  
Sbjct: 430 VSKNPLPNHQNVQINAIECQEIESKSKVA-DIRTPMVELFEILLGSGYVSVEYLCPNLKY 489

Query: 170 RAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMVQLPQYGEVDIIEEC 229
           + YD+SL C +  GAKGHS++QC  FR+KVQELLDS  LTV+       Q   ++I+E+ 
Sbjct: 490 KGYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANS----HQKKGINIVEDV 548

Query: 230 SRQE 234
           S  E
Sbjct: 550 SVAE 548

[Close]
BLAST of Spg019634 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-14
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 0 

Query: 143 TPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQEL 202
           TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +  GAKGHS++QC  FR+KVQEL
Sbjct: 455 TPKEELFEILLGSGYVSVEYLCPNLKYKEYDESLTCPFHAGAKGHSLEQCNSFRMKVQEL 514

Query: 203 LDSHFLTV--SQKMVQLPQYGEVDIIEECSRQEREKRLARLESREP 247
           LDS  LTV  S +   +    +V + E  S   + KRL    S +P
Sbjct: 515 LDSKILTVANSHQKKGINVVEDVSVAEGSSDALKPKRLTIFYSEKP 560

[Close]
BLAST of Spg019634 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-10
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 42  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------P 101
           ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            P
Sbjct: 1   MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60

Query: 102 PIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPVH 127
           P+R   EG  P+   Y PLY++P+ Q+P  F K  +Q+P +
Sbjct: 61  PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQQIPTN 101


HSP 2 Score: 87.8 bits (216), Expect = 8.7e-14
Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 0 

Query: 110 VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGV 169
           V  +P P   N Q+           ++ A  + TPM ELFEIL  +GY+ VE L  +L  
Sbjct: 365 VSNNPLPNHXNVQINAIECQEIESKSKVA-DITTPMEELFEILLGSGYVSVEYLCPNLKY 424

Query: 170 RAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMVQLPQYGE 229
           + YD+SL C +  GAKGH+++QC  FR+ VQELLDS  LTV+         +V+     E
Sbjct: 425 KGYDESLTCPFHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKGINVVEDVSVAE 484

Query: 230 VDIIEECSRQEREKRLARLESREP 247
             I E  S   + KRL    S +P
Sbjct: 485 GSIAEGSSDALKPKRLTIFYSEKP 507

[Close]
BLAST of Spg019634 vs. ExPASy TrEMBL
Match: A0A6J1DR66 (uncharacterized protein LOC111022791 OS=Momordica charantia OX=3673 GN=LOC111022791 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-13
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 0 

Query: 233 EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYL 292
           E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYL
Sbjct: 453 EKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQVGPFVYL 512

Query: 293 CPEDFELNNWTVMELPSFVNEISK 316
           CP+ FEL+NW+V+ELPSFVN   K
Sbjct: 513 CPDGFELSNWSVIELPSFVNNKXK 536

[Close]
BLAST of Spg019634 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-13
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 0 

Query: 233  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYL 292
            E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYL
Sbjct: 1037 EKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQVGPFVYL 1096

Query: 293  CPEDFELNNWTVMELPSFVNEIS 315
            CP+ FEL+NW+V++LPSFVN  S
Sbjct: 1097 CPDGFELSNWSVIKLPSFVNNKS 1119

The following BLAST results are available for this feature:
BLAST of Spg019634 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158986.12.8e-1441.94LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
XP_022157796.11.4e-1346.23LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia][more]
XP_022157796.11.6e-0944.55LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia][more]
XP_022155744.13.1e-1347.62uncharacterized protein LOC111022791 [Momordica charantia][more]
XP_022147189.11.2e-1246.99LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]

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BLAST of Spg019634 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg019634 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2J71.3e-1441.94Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1[more]
A0A6J1DZ906.7e-1446.23Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1[more]
A0A6J1DZ907.6e-1044.55Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1[more]
A0A6J1DR661.5e-1347.62uncharacterized protein LOC111022791 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1D0995.7e-1346.99Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1[more]

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BLAST of Spg019634 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019634.1Spg019634.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid