Spg019550 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019550
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mediator of RNA polymerase II transcription subunit 11
Location	scaffold5: 31980481 .. 31982827 (+)
RNA-Seq Expression	Spg019550
Synteny	Spg019550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGTATCGCTCCACCCAGAATGACCAATCATCTGGGCCCCCTTCGAGTATGGGCATTTTAATCTTTTTGAGTTTATGTTTTTCAAAGTAAATCTCCTTGGTGCTTTTAGTTGCTGTTGGATGACCCTATATCAAGTTATGGTGTCTTGTGTTTCTGGCTTGCCTCTTTTCCATCTCGCTAACCGCTTCGTGACCGACTTGTAACTAGGTTGAGCAAGGCCCTTTGGGTCTCCACCGTTGCCTGTCTTTGATCTTCTAGGTTGTTTAAAAGTCTCTCTATTCTCTTATTAATTTCTGCCATTGTCCGTTCGATTTCAGGGATCTTGTCTTTCATGGCCTCTACACTTTTTTCCGATTCGGACATTCTCTCTTCTAACTATCTTTGCAACATTGTCCGTGTCTTTCCCAGGATGAACGCTCTGATACCACTTTGTTAAAATACTTCTTAATAGATTTACACTGGATGATACCAAAATACAAAGTAATAGTCCACCAAATATAAAATAACTTTAGAAACTCCACCTTTCGAGAGGGTGGTTCTCTCCCACTCTATCATCCTCGACAGAGACAAACTAACTCAAAATAAGCATAAAACATACAAAAGTACATAAGGCATATATAAATACTAATTCTTAAGATGGTGGTGAATTTCCACCTCTATCCCTCCTTGTATACGTAATGATACCCATTTGTGTATAGGTAATGATAAGTGGGGTCCTCACATAATGTTATTATATGAAATTTAATCCTATCAGAAGTCCAAATAAAATTTTCTTACAAAAAGTGCTCTTCCTTGTATCTAGTTTTCCTGCACAGGAAAAGTATGGAATGATTGTGTTAGAGTATTACTGGGAATATACTGGGATATTGGTAGTGACATAATGGTAATTTGTTGGTAGTTTTTTAGGGTGAGTTGGTTGGGAGTTGGGGAGTGTAGAGGAGGGGTATTATTTCTGAATAGTATTAATTTGTTACCATTTGGTTCTCGTAATTGCGATCCTAGTAGATTGTAGAGAATAACTAGAACATAAGTTTTGTGGTTTGGTTGGTATGCTTAACTTTAGCATTATTAAAGATGGGGCATCATTGTCAGGATTTGGTGTTCCATAAGTAACAACGATAACCTTTCATATTTAATTACAAGTGAAGAGTATCAGAGTATGTTTGGATATTTTTTAATATTCCATACGTCAAAAATAGTTATCTAATTGGCTATATGTCAAAAATATTTTCAAAAATCTCAAAAGCACTCCCTTTCACTTTGTGGAAGAAGCGCATGATATTGTTTCTCTCTCACTAGTTAAGTAAATGGTTCATTTGAAGCCATCTAAATGCGCTCCTATATTTCACCTAAATCTCGTTGAATTGTATCTGAAGAATAATGTGCAACATTTTCTCCACCTTGAAATCAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAGTACCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATCACTAATGAGCTTTCCTGCAAGAAACTGGAATACATGATTTCAAAGTTGGATGGAATGAAACAAACCATCGATGAGTATCAAGTGAAAATGGAAGATGCTTGAAGCACGTCTTGGTGAGCTGCTAATCTAACCATTTGCCATTTTTCTCGTACGGGGTTGTAGAAACTAAAGGTTAAAAGGTTTCTTCAGTCATGTACTTATATGAACCATCCATGGTAGAACTAATAGAATCCATGTATGACTCGTTGACTCATACCAAGATCCTGTTGTATACTTAGTAAGATCTCTTTTTTTATCCTATTATTATCTGGGGTTTTTTGTCATCCATTTTCGAAAGGGTGACAGATCCAAATCTGGGCAGATATTCTATCTGTAGGGATGGCTTTACCATTCATTGTTTTCCTTTAAAAATCTGTGGTCTTTTCTGTATTTGATATAAGGTAATGTCTTATTGGCTGTATTCGGTTTCTTCCATTTGTTCGTGTCAGGAGCCCGAGTCACCTGCTCAACAAAGTGAAGTATTCATTATTGAATTTTGATGTTCAAATGATTGATTATAACAACCAGTTGTCTTTCTAGCTAACATGGAACTAAAAGTCTTGTTTTATGGCGGTGGATTGAGAATATACTTTTTTCCATTGAAATAGAAACGGCTGCAGGAGTATAGCAGAGCAAGGCTACAAGTTTTGGAGAGAGAACACTTTTTCCTTTTCATTTGCTTAGACTGCTTTATCTTTTTTAGTTTTTCTTGAGCCAAAAGGAGTTTATTCTTCCAAGGTTGTGCTTGCCACATAGAAGATATTGGAGAGATGTTTCTGATCCTTTTGAAAATCAAAAGCAAGGGAG

mRNA sequence

ATGGTGAAGTATCGCTCCACCCAGAATGACCAATCATCTGGGCCCCCTTCGAGAAAAGTATGGAATGATTGTGTTAGAGTATTACTGGGAATATACTGGGATATTGGTAGTGACATAATGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAGTACCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATCACTAATGAGCTTTCCTGCAAGAAACTGGAATACATGATTTCAAAGTTGGATGGAATGAAACAAACCATCGATGAGTATCAAGTGAAAATGGAAGATGCTTGA

Coding sequence (CDS)

ATGGTGAAGTATCGCTCCACCCAGAATGACCAATCATCTGGGCCCCCTTCGAGAAAAGTATGGAATGATTGTGTTAGAGTATTACTGGGAATATACTGGGATATTGGTAGTGACATAATGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAGTACCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATCACTAATGAGCTTTCCTGCAAGAAACTGGAATACATGATTTCAAAGTTGGATGGAATGAAACAAACCATCGATGAGTATCAAGTGAAAATGGAAGATGCTTGA

Protein sequence

MVKYRSTQNDQSSGPPSRKVWNDCVRVLLGIYWDIGSDIMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA

Homology

[Close]

BLAST of Spg019550 vs. NCBI nr
Match: XP_023520390.1 (mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520391.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKM
Sbjct: 92  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKM 151

Query: 99  EDA 102
           EDA
Sbjct: 152 EDA 154

[Close]

BLAST of Spg019550 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKM
Sbjct: 56  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKM 115

Query: 99  EDA 102
           EDA
Sbjct: 116 EDA 118

[Close]

BLAST of Spg019550 vs. NCBI nr
Match: XP_022927635.1 (mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927636.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927637.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927638.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKM
Sbjct: 92  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKM 151

Query: 99  EDA 102
           ED+
Sbjct: 152 EDS 154

[Close]

BLAST of Spg019550 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKM
Sbjct: 56  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKM 115

Query: 99  EDA 102
           ED+
Sbjct: 116 EDS 118

[Close]

BLAST of Spg019550 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 4.3e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVK+
Sbjct: 56  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKV 115

Query: 99  EDA 102
           EDA
Sbjct: 116 EDA 118

[Close]

BLAST of Spg019550 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-16
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 13  SGPPSRKVWNDCVRVLLGIYWDIGSDIMDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL 72
           SGP    V + C   +          + DIQVTLR+EIKSACEYRPFEKCDY++RI NE+
Sbjct: 38  SGPKKEFVNSHCREFM--------QSMKDIQVTLREEIKSACEYRPFEKCDYNARIANEI 97

Query: 73  SCKKLEYMISKLDGMKQTIDEY 95
             +KLEY++++L+ +KQT D Y
Sbjct: 98  CFQKLEYVLTQLEDLKQTADRY 111

[Close]

BLAST of Spg019550 vs. ExPASy TrEMBL
Match: A0A6J1EPI6 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKM
Sbjct: 92  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKM 151

Query: 99  EDA 102
           ED+
Sbjct: 152 EDS 154

[Close]

BLAST of Spg019550 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKM
Sbjct: 56  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKM 115

Query: 99  EDA 102
           ED+
Sbjct: 116 EDS 118

[Close]

BLAST of Spg019550 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVK+
Sbjct: 56  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKV 115

Query: 99  EDA 102
           EDA
Sbjct: 116 EDA 118

[Close]

BLAST of Spg019550 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-25
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTID+YQVKM
Sbjct: 56  IKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKM 115

Query: 99  EDA 102
           ED+
Sbjct: 116 EDS 118

[Close]

BLAST of Spg019550 vs. ExPASy TrEMBL
Match: A0A6J1I6T5 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111471674 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.7e-24
Identity = 59/63 (93.65%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 39  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKM 98
           I DIQVTLRDEIKSACEYRPFEKCDYSSRI NEL CKKLEYMI KLDGMKQTIDEYQVKM
Sbjct: 56  IKDIQVTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKM 115

Query: 99  EDA 102
           EDA
Sbjct: 116 EDA 118

[Close]

BLAST of Spg019550 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 87.0 bits (214), Expect = 9.2e-18
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 13  SGPPSRKVWNDCVRVLLGIYWDIGSDIMDIQVTLRDEIKSACEYRPFEKCDYSSRITNEL 72
           SGP    V + C   +          + DIQVTLR+EIKSACEYRPFEKCDY++RI NE+
Sbjct: 38  SGPKKEFVNSHCREFM--------QSMKDIQVTLREEIKSACEYRPFEKCDYNARIANEI 97

Query: 73  SCKKLEYMISKLDGMKQTIDEY 95
             +KLEY++++L+ +KQT D Y
Sbjct: 98  CFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:

BLAST of Spg019550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520390.1	1.5e-25	96.83	mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pep...	[more]
XP_023520392.1	1.5e-25	96.83	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep...	[more]
XP_022927635.1	3.3e-25	95.24	mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita mos...	[more]
XP_022927640.1	3.3e-25	95.24	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos...	[more]
XP_022142440.1	4.3e-25	95.24	mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP...	[more]

BLAST of Spg019550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6ID77	1.3e-16	51.22	Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O...	[more]

BLAST of Spg019550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPI6	1.6e-25	95.24	Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=...	[more]
A0A6J1EPJ1	1.6e-25	95.24	Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=...	[more]
A0A6J1CKY4	2.1e-25	95.24	Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX...	[more]
A0A1S3B5G7	3.5e-25	93.65	Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1I6T5	1.7e-24	93.65	Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=36...	[more]

BLAST of Spg019550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01435.1	9.2e-18	51.22	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..101
None	No IPR available	PANTHER	PTHR22890:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11	coord: 39..97
IPR019404	Mediator complex, subunit Med11	PANTHER	PTHR22890	UNCHARACTERIZED	coord: 39..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019550.1	Spg019550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity