Spg019473 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019473
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold1: 40600781 .. 40605377 (+)
RNA-Seq ExpressionSpg019473
SyntenySpg019473
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAACAGCAAGATACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAAATTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTTGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGTGAGATTTGATTTTCTTGAAATTTAGTTCATTTTCTAACAAAATTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTCGAATGGAAAACAGAGCACATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTTGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTAATGAATATTTCGTGAGCCAAAAATGACTTTAAGTAGTGTTAATTTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGAAATTCTGGGCAAATCGATTGAGAATCTCATTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGTATTTAATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTTTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATGTTTAGATGTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAACAGTTTCAAGCATGAGTTCTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGGAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTTTAGTTTTTCACGAGCAAGCTGAGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTTCGTGACAACAATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACAGGGCGTGCCCTACACAACGTAAATCTGTCATGTTAGTTAAAACCTTTGATTTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTACGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTGTGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGGGTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCGTGGTTGTATAAAACCTAGTTGTATATGTTTTTCGTTGTGACATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTGTTGGAAGTTTTTTTTCAGGGATTCCGCTGTCTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTCCAGGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAGCTCCAAAGTTCCAAGTTGGAGATCGAGTTTTCTTAAAGTTATCTCCGTGGAAAGGTGTTCTTCGCTTTGGGAGGAAAGGTAAGCTGAGTCCTAGATATATTGGTCCGTACCAGATAATAGAATGAGTTGGACCAGCAGCCTATAGACTTGAATTGCCAGCGGAACTCGCTCGAATACATGATGTTTTCCATGTGTCCATGTTGAGGAAATATATTCCAGATCCGTCCCATGTGTTGCAAATGCAACCAATTGAGCTGAAGGAAGACTTGAGTTATAAGGAGGAAGCGGTTCAGATCCTCGACAGGAAGGAGAAAGTTTTGAGAAACAAAACGATCCCACTCGTGAAAGTTCTTTGGAGACATCACGGAGTAGAGGAGGCAACCTGGGAGTCAGAAGATCAAATGAGGAGGAGTTACCCGACACTCTTCACCTAAGACTTCTAAATTTCGAGGACGAAATTTCATAAGGGGGAGGTAAGTTGTAAACCCGAGACTTTCTTTACATAATTTTCTCTTGTCATCTATAGTGGAAGTTGGACTAAGTTGTTGGGACTTGCCAATTGAAAAGAAGAAAAGAAAAGAATGGAAATAAAGAAGAAAAAAAAAAACAAAAAAAGAAAGAAAGTGGAAATGGACAGCAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATACGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGTGAGATTTGATTTTCTTGAAATTTAGTTCATTTTCTAACAAAATTCATGAAGGAAGCTTGAGATAAATCGTATGAGAAGTTAATGGATTTTCGAATGGAAAACAGAGCACATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTAGTAGTCGAATCCGAAGCTCTATTTTGTATGGTTGGAAAGCTTATTCAATTTCCTATAACTTTCATGAAGATTTCGTGAGCCAAAAATGACTTTAAGTAGGATTAATTTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGAAATTCTGGGAAAATCGGTTGGGAATCTCATTTTCATTTCTTCCGGTAAGGTTTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTTATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTTTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATGTTTAGATGTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAACAGTTTCAAGCATGAGTTCTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGGAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTTCAGTTTTTCACGAGCAAGCTGGGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAAATCGGTCATGTTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTACGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTGTGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTCATAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

mRNA sequence

ATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTTGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGCCAAGAGGAAATAGGTCGAGTTTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTCAGAACAAGCTCCAAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATACGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGA

Coding sequence (CDS)

ATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTTGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGCCAAGAGGAAATAGGTCGAGTTTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTCAGAACAAGCTCCAAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATACGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGA

Protein sequence

MIFEQTRRISGVLWCFEHSWVYKLNPKLYLVSCRVFENEDFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKHFKERVKEEEEEEFRGFEVEEDTKSSCKASHSRIWVQN
Homology
BLAST of Spg019473 vs. NCBI nr
Match: KAA0053207.1 (hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa] >TYK00136.1 hypothetical protein E5676_scaffold2510G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-10
Identity = 49/110 (44.55%), Postives = 57/110 (51.82%), Query Frame = 0

Query: 21  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQT 80
           +YKLN KLYLVSC VFENE+F                           ++PRGNR SLQT
Sbjct: 43  LYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELPRGNRPSLQT 102

Query: 81  GELDKT-----------------VEIELPVPDTLPTSAESFRTSSKHFKE 87
           GELDKT                 VEIELP P+ LPTSAES R++S  + E
Sbjct: 103 GELDKTIIFPLSTLSVLRDNDAVVEIELPAPNALPTSAESSRSNSSTWLE 152

BLAST of Spg019473 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-09
Identity = 46/105 (43.81%), Postives = 54/105 (51.43%), Query Frame = 0

Query: 21  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQT 80
           V++ N  LYLVSCRVF +EDF                           ++PRGNRSSLQT
Sbjct: 132 VHESNQMLYLVSCRVFVSEDFYVYFINFGYVLRKLWVLEVRTSNLENLEIPRGNRSSLQT 191

Query: 81  GELDKT-----------------VEIELPVPDTLPTSAESFRTSS 82
           G+LDKT                 VEIELPVPDT PTSAES  ++S
Sbjct: 192 GKLDKTVIFPLSMLSVLRDNDVVVEIELPVPDTHPTSAESSESNS 236

BLAST of Spg019473 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 10  SGVLWCFEHSWVYKLNPKLYLVSCRVFENEDFDVPRGNRSSLQTGELDKT---------- 69
           SG  W    +W+      L ++  R+   E+ ++PRGNRSSLQTGELDKT          
Sbjct: 64  SGKFWT---NWLRISFSFLQVLEVRISNLENLEMPRGNRSSLQTGELDKTVIFLLSTLSV 123

Query: 70  -------VEIELPVPDTLPTSAESFRTSSKHFKE 87
                  VEIELPVPDTLPTSAESF ++S  + E
Sbjct: 124 LYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

BLAST of Spg019473 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 28  LYLVSCRVFENEDFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKHFKE 87
           +++ S R+   E+ ++PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ES +++S  + E
Sbjct: 75  VFISSVRISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLE 133

BLAST of Spg019473 vs. NCBI nr
Match: TYK14495.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-08
Identity = 49/123 (39.84%), Postives = 55/123 (44.72%), Query Frame = 0

Query: 21  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQT 80
           V+K N KLYLVSCRVFENE F                           ++ RGNR SLQT
Sbjct: 728 VHKSNQKLYLVSCRVFENEYFYVYFINFGYVLRKLWVLEFRISNLENLEMLRGNRPSLQT 787

Query: 81  GELDKT----------------------------------VEIELPVPDTLPTSAESFRT 83
           GELDKT                                  VEIELPVPDTLPTSAESF +
Sbjct: 788 GELDKTVIFSLSTLMYSMTTMLSSISKSAGRKSESADKLMVEIELPVPDTLPTSAESFES 847

BLAST of Spg019473 vs. ExPASy TrEMBL
Match: A0A5A7UFD2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00220 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 49/110 (44.55%), Postives = 57/110 (51.82%), Query Frame = 0

Query: 21  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQT 80
           +YKLN KLYLVSC VFENE+F                           ++PRGNR SLQT
Sbjct: 43  LYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELPRGNRPSLQT 102

Query: 81  GELDKT-----------------VEIELPVPDTLPTSAESFRTSSKHFKE 87
           GELDKT                 VEIELP P+ LPTSAES R++S  + E
Sbjct: 103 GELDKTIIFPLSTLSVLRDNDAVVEIELPAPNALPTSAESSRSNSSTWLE 152

BLAST of Spg019473 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.2e-09
Identity = 46/105 (43.81%), Postives = 54/105 (51.43%), Query Frame = 0

Query: 21  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQT 80
           V++ N  LYLVSCRVF +EDF                           ++PRGNRSSLQT
Sbjct: 132 VHESNQMLYLVSCRVFVSEDFYVYFINFGYVLRKLWVLEVRTSNLENLEIPRGNRSSLQT 191

Query: 81  GELDKT-----------------VEIELPVPDTLPTSAESFRTSS 82
           G+LDKT                 VEIELPVPDT PTSAES  ++S
Sbjct: 192 GKLDKTVIFPLSMLSVLRDNDVVVEIELPVPDTHPTSAESSESNS 236

BLAST of Spg019473 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.2e-09
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 10  SGVLWCFEHSWVYKLNPKLYLVSCRVFENEDFDVPRGNRSSLQTGELDKT---------- 69
           SG  W    +W+      L ++  R+   E+ ++PRGNRSSLQTGELDKT          
Sbjct: 64  SGKFWT---NWLRISFSFLQVLEVRISNLENLEMPRGNRSSLQTGELDKTVIFLLSTLSV 123

Query: 70  -------VEIELPVPDTLPTSAESFRTSSKHFKE 87
                  VEIELPVPDTLPTSAESF ++S  + E
Sbjct: 124 LYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

BLAST of Spg019473 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 28  LYLVSCRVFENEDFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKHFKE 87
           +++ S R+   E+ ++PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ES +++S  + E
Sbjct: 75  VFISSVRISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLE 133

BLAST of Spg019473 vs. ExPASy TrEMBL
Match: A0A5D3CSJ5 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00060 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 49/123 (39.84%), Postives = 55/123 (44.72%), Query Frame = 0

Query: 21  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQT 80
           V+K N KLYLVSCRVFENE F                           ++ RGNR SLQT
Sbjct: 728 VHKSNQKLYLVSCRVFENEYFYVYFINFGYVLRKLWVLEFRISNLENLEMLRGNRPSLQT 787

Query: 81  GELDKT----------------------------------VEIELPVPDTLPTSAESFRT 83
           GELDKT                                  VEIELPVPDTLPTSAESF +
Sbjct: 788 GELDKTVIFSLSTLMYSMTTMLSSISKSAGRKSESADKLMVEIELPVPDTLPTSAESFES 847

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053207.12.7e-1044.55hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa] >TYK001... [more]
TYK01208.18.7e-0943.81uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa][more]
KAA0067117.11.5e-0845.74hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747... [more]
KAA0062263.12.5e-0854.24hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa][more]
TYK14495.13.3e-0839.84putative polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UFD21.3e-1044.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BQ754.2e-0943.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VIY97.2e-0945.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2F21.2e-0854.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CSJ51.6e-0839.84Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019473.1Spg019473.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding