Spg019353 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019353
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold1: 45888825 .. 45889883 (-)
RNA-Seq Expression	Spg019353
Synteny	Spg019353

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAACAAGAGCAAGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCCGTTACCCCCGAAGCACCGAAAGTGAAGGCAAAGAAGAAGAAGACACCGGAGGAAAAAGAAGCTAAAAGAAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAGCTGTACAGAAGGTTGTGGAAGACGTTGCTGCCACAGTGGTTGAAGAAGATCCGCAGGAACCAGAGGAACAAAATCGAGAGCAGACTGAGCCGAGAGTGGCGGATACAGAAAGAACTCAAGAAGAGAATACAGAGGAAGTTCAAGAAAAACAGGCCGAAGATGTGCAAGAAGGACAGACAGAGGTTGCACCTGAAGGAGATAATGAGCCAGTGCAGGAGGCTCAAGTGGAGGTGATCATGCCAGAGGTACGAAAGCGTCGCCGCGTTAAGATTAAAGCAGGCCGCGCTAGGATTGTCCGAACTGATACTCCTTCGCCTCCAACCACTGATTCTGAAAGAGAAAATGCAGGACGAGAGGAACGAGAAAAGAAAGAAGCTGAGGACAAGGCTAGAGAAGAAGAAGCAAAGAAAGCGGAAGAAGAGATTTTGCCCAAACAAGCGGAAGACAAGGGCAAAGGTATTGTTGAGGCATCGGGTGAGGCTGACGAGATTGAGGAACCGAGATTACCGTACAATCGCTTCATCAATAACCTTGCTCGGGCAAAGTATGTTGAGATGCTGAGAAGGGACTTCCTGTTTGAACGAGGATTTGGCGATGATCTGCCGCGGTTCTTGAGGACTGGAATAGTGAACCTCGGCTGGAGTCAATTTGGTGCGAAGCCGGAACCTGTTAATTCAAACATTGTTCGAGAATTTTACGCCAATATTGACGATCACGAAGAATTTCAGGTTATCGTTCGAGGAGTACCCGTTGACTGGAGCCCAGGAGCCATTAATGCTTTGTTTAACCTCCAGGACTTTCCACACGCAGGCTTTAATGAGATGGTGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCAAGAGGTTGGCATTGAGGGGGCCCAGTGGAGATTGTAG

mRNA sequence

ATGGCGAAAACAAGAGCAAGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCCGTTACCCCCGAAGCACCGAAAGTGAAGGCAAAGAAGAAGAAGACACCGGAGGAAAAAGAAGCTAAAAGAAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAGCTGTACAGAAGGTTGTGGAAGACGTTGCTGCCACAGTGGTTGAAGAAGATCCGCAGGAACCAGAGGAACAAAATCGAGAGCAGACTGAGCCGAGAGTGGCGGATACAGAAAGAACTCAAGAAGAGAATACAGAGGAAGTTCAAGAAAAACAGGCCGAAGATGTGCAAGAAGGACAGACAGAGGTTGCACCTGAAGGAGATAATGAGCCAGTGCAGGAGGCTCAAGTGGAGGTGATCATGCCAGAGGTACGAAAGCGTCGCCGCGTTAAGATTAAAGCAGGCCGCGCTAGGATTGTCCGAACTGATACTCCTTCGCCTCCAACCACTGATTCTGAAAGAGAAAATGCAGGACGAGAGGAACGAGAAAAGAAAGAAGCTGAGGACAAGGCTAGAGAAGAAGAAGCAAAGAAAGCGGAAGAAGAGATTTTGCCCAAACAAGCGGAAGACAAGGGCAAAGGTATTGTTGAGGCATCGGGTGAGGCTGACGAGATTGAGGAACCGAGATTACCGTACAATCGCTTCATCAATAACCTTGCTCGGGCAAAGTATGTTGAGATGCTGAGAAGGGACTTCCTGTTTGAACGAGGATTTGGCGATGATCTGCCGCGGTTCTTGAGGACTGGAATAGTGAACCTCGGCTGGAGTCAATTTGGTGCGAAGCCGGAACCTGTTAATTCAAACATTGTTCGAGAATTTTACGCCAATATTGACGATCACGAAGAATTTCAGGTTATCGTTCGAGGAGTACCCGTTGACTGGAGCCCAGGAGCCATTAATGCTTTGTTTAACCTCCAGGACTTTCCACACGCAGGCTTTAATGAGATGGTGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCAAGAGGTTGGCATTGAGGGGGCCCAGTGGAGATTGTAG

Coding sequence (CDS)

ATGGCGAAAACAAGAGCAAGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCCGTTACCCCCGAAGCACCGAAAGTGAAGGCAAAGAAGAAGAAGACACCGGAGGAAAAAGAAGCTAAAAGAAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAGCTGTACAGAAGGTTGTGGAAGACGTTGCTGCCACAGTGGTTGAAGAAGATCCGCAGGAACCAGAGGAACAAAATCGAGAGCAGACTGAGCCGAGAGTGGCGGATACAGAAAGAACTCAAGAAGAGAATACAGAGGAAGTTCAAGAAAAACAGGCCGAAGATGTGCAAGAAGGACAGACAGAGGTTGCACCTGAAGGAGATAATGAGCCAGTGCAGGAGGCTCAAGTGGAGGTGATCATGCCAGAGGTACGAAAGCGTCGCCGCGTTAAGATTAAAGCAGGCCGCGCTAGGATTGTCCGAACTGATACTCCTTCGCCTCCAACCACTGATTCTGAAAGAGAAAATGCAGGACGAGAGGAACGAGAAAAGAAAGAAGCTGAGGACAAGGCTAGAGAAGAAGAAGCAAAGAAAGCGGAAGAAGAGATTTTGCCCAAACAAGCGGAAGACAAGGGCAAAGGTATTGTTGAGGCATCGGGTGAGGCTGACGAGATTGAGGAACCGAGATTACCGTACAATCGCTTCATCAATAACCTTGCTCGGGCAAAGTATGTTGAGATGCTGAGAAGGGACTTCCTGTTTGAACGAGGATTTGGCGATGATCTGCCGCGGTTCTTGAGGACTGGAATAGTGAACCTCGGCTGGAGTCAATTTGGTGCGAAGCCGGAACCTGTTAATTCAAACATTGTTCGAGAATTTTACGCCAATATTGACGATCACGAAGAATTTCAGGTTATCGTTCGAGGAGTACCCGTTGACTGGAGCCCAGGAGCCATTAATGCTTTGTTTAACCTCCAGGACTTTCCACACGCAGGCTTTAATGAGATGGTGGTCGCACCATCTAACGACCAACTAAATGCGGCTGTCCAAGAGGTTGGCATTGAGGGGGCCCAGTGGAGATTGTAG

Protein sequence

MAKTRARKERDNEEEEVPVTPEAPKVKAKKKKTPEEKEAKRRRRQQRAEDQEAVQKVVEDVAATVVEEDPQEPEEQNREQTEPRVADTERTQEENTEEVQEKQAEDVQEGQTEVAPEGDNEPVQEAQVEVIMPEVRKRRRVKIKAGRARIVRTDTPSPPTTDSERENAGREEREKKEAEDKAREEEAKKAEEEILPKQAEDKGKGIVEASGEADEIEEPRLPYNRFINNLARAKYVEMLRRDFLFERGFGDDLPRFLRTGIVNLGWSQFGAKPEPVNSNIVREFYANIDDHEEFQVIVRGVPVDWSPGAINALFNLQDFPHAGFNEMVVAPSNDQLNAAVQEVGIEGAQWRL

Homology

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BLAST of Spg019353 vs. ExPASy TrEMBL
Match: A0A4Q3ENY7 (Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_09925 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-09
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 226 FINNLARAKYVEMLRRDFLFERGF----GDDLPRFLRTGIVNLGWSQFGAKPE-PVNSNI 285
           F +  A  +Y  +++R  +FERG        +   +   I    W +F A PE   N  +
Sbjct: 8   FTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTL 67

Query: 286 VREFYANIDDHEEFQVIVRGVPVDWSPGAINALFNLQD--FPHAGFNEMVVAPSNDQLNA 345
           + EFYAN+ DHE+  V VRGV VD S GAINAL    D  F + G+ + +  P+ D++ +
Sbjct: 68  MYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDIEFENEGYRQWLRNPNLDEMLS 127

The following BLAST results are available for this feature:

BLAST of Spg019353 vs.


Match Name	E-value	Identity	Description

BLAST of Spg019353 vs.


Match Name	E-value	Identity	Description

BLAST of Spg019353 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Q3ENY7	5.5e-09	34.13	Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_099...	[more]

BLAST of Spg019353 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 161..195
None	No IPR available	COILS	Coil	Coil	coord: 85..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019353.1	Spg019353.1	mRNA