Spg019147 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019147
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold1: 47771163 .. 47774052 (-)
RNA-Seq Expression	Spg019147
Synteny	Spg019147

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAGAAAGAAAAGAAAGGAAATGAAATGAAATGAAAAAGTGAAAAAGAAAATGGAATAGGAAAATGAAAAACAAAAAAAAGAAAAAGAGAAAAGAAAGAAAATGAATGGGAAAGGACAGCAAGAAACTCCACCACCGACAACATTCAATATCAGCTCATTCCAGCCACATTCAACATTCTCCATCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGTAGAAAGAAGAAGAAGAATAATTTTGGAGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACATGTCAACCTCTGGTTTTTGATTCGGTTTGAGCTACACATAAGGAACTAAGAGGTGAGGTTTGCTTTTCTTGAAAGTTAGTCCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATATGATGAGAAGTTAATAGTTTTTTAAATGGAAAACAGAGCACAGGATTTTTTAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGCTGAATCAGAAGCTCTATTTGGTATGGTTTGAACGTTTATTCAATTTCCTATAACTTTCATGAAGAATTCGGGAGCCAAAAATGACTTGAAGTAGGTTTAGTTTCAGGAGGTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGAATTTCTGGACAAAGCGGTTGGGAATCTCGATTTAATTTCTTCAGTTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTATAGTACGTTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTAATTCAAGTGTCTAGAATTCATGAGCAGTGAAGATAAGACTATCTTTGGTTCTAATGCTCGGTTCTGGTTGTTTGACAGGCCAAGAGAAAATAGGTCGAGTCTACAGACCAGAGAACTAGCTAAGACAGTGAGTCACAAAACTAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGACGTTTTACATGCTTTTCTATGAATGATACATGGTTTTTTTGAATGGTTTGAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCTTTTTAAGCCAAGCATGTATTAGCAAGACTTATTTAAAGATTTTCGATTTTTTTTTCCTCGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGTGATTTTCTGAGATTTTTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACCTGCAATGTTTTTTTTAGAAAGCTTTTATCATTGAACGTTTATGTTTAACGGCTTGGTTGATCAACTTCATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTAAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGATCCCGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAAGCATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCTATTGTATATGTTTTTTGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTGAAGGGTTTTCAGGGATTCCGCTGTGTTGTGTTTCACGTAGAATATCTTATATCTAAGATTAGTATGTTTATCAGGTTCAACATTTCAGGAGGGTCAATGGGTATCGTTAGAGGATGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATTCGCTGTCTGGTCTTATGCAAACTCATTGCATAGGATACCCCCACCCACATGTTTCCTACATGGATTCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTTGTATCACATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCGTATACTATAGACCTTTTAGGTTGTTACTTGGATTTTTCTTGAGCCTTTGAAAAAGTGGCTTGCAAATGGGTCTGAGGTTTTGGATGAAATCAGACACATAATTGAGACAGCCCAAAAACCTTTGCAGTTGGGTTTTATCGGTTATTTGGTCCGGAAAGTTTGAAGCAAAGTTTATGGACCTCTGAATTGGTTTTATCAGGCCCATATGAATATTGAAGCCCAGTTTGGTATCAGAGCCATCAATTACTCAATAAAATTTTCAATTTCTCAATTGTTGATTTCAAATTTTTCTAGGGGGAGAAGGGATAGGATTCCAGAAAATCTATTCTTCTTAAGCTCATTCCATAGTTTTTGAAGTTTAAATCTATCTTCGACGAAGAGATCGTCAGAAGTTATTTACGTTCATCTACTCATAAGGACTGTTGCGAAGGACTGTTGCGGTTGGTGGTCCCGGTCGTAAGACGCAAAGAAGAGCGCAGTGA

mRNA sequence

ATGGAAAACAGAGCACAGGATTTTTTAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGCTGAATCAGAAGCTCTATTTGAATTCATGAGCAGTGAAGATAAGACTATCTTTGGTTCTAATGCTCGGTTCTGGTTGTTTGACAGGCCAAGAGAAAATAGGTCGAGTCTACAGACCAGAGAACTAGCTAAGACAGTAGAGATCGAGATCCCGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTCCAGATCAAGCTCCAGTTCAACATTTCAGGAGGGTCAATGGGTATCGTTAGAGGATGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGACTGTTGCGAAGGACTGTTGCGGTTGGTGGTCCCGGTCGTAAGACGCAAAGAAGAGCGCAGTGA

Coding sequence (CDS)

ATGGAAAACAGAGCACAGGATTTTTTAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGCTGAATCAGAAGCTCTATTTGAATTCATGAGCAGTGAAGATAAGACTATCTTTGGTTCTAATGCTCGGTTCTGGTTGTTTGACAGGCCAAGAGAAAATAGGTCGAGTCTACAGACCAGAGAACTAGCTAAGACAGTAGAGATCGAGATCCCGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTCCAGATCAAGCTCCAGTTCAACATTTCAGGAGGGTCAATGGGTATCGTTAGAGGATGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGACTGTTGCGAAGGACTGTTGCGGTTGGTGGTCCCGGTCGTAAGACGCAAAGAAGAGCGCAGTGA

Protein sequence

MENRAQDFLAKQEDLWFSLVFRAFWGVQAESEALFEFMSSEDKTIFGSNARFWLFDRPRENRSSLQTRELAKTVEIEIPVPDTLPTSAGSSRSSSSSTFQEGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLLRRTVAVGGPGRKTQRRAQ

Homology

[Close]

BLAST of Spg019147 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 51/101 (50.50%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 48  SNARFWLFDRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGS 107
           SN + +L  RPR NR SLQT +L KT                 VEIE+PVPDTLPTSA S
Sbjct: 46  SNQKLYLV-RPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAES 105

Query: 108 SRSSSSSTFQEGQWVSLEDDDVRWLHAIFRTKLAGGPGGGL 132
             S+S ST        +  DDV WLHA+FR K AGGPGGG+
Sbjct: 106 FESNSRST------GIVRGDDVCWLHAVFRAKTAGGPGGGV 139

[Close]

BLAST of Spg019147 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 52/120 (43.33%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 58  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ 117
           PR NR SLQT EL KT                 VEIE+P+PDTLPTSA SS S+SS+  +
Sbjct: 123 PRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLE 182

Query: 118 ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLLRRTVAVGGPGRKTQRRAQ 151
                      G    +  DDV WLHA+FR K  GGPGGG++        P R ++RR Q
Sbjct: 183 LYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVM--------PPRTSRRRRQ 234

[Close]

BLAST of Spg019147 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 52/120 (43.33%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 58  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ 117
           PR NR SLQT EL KT                 VEIE+P+PDTLPTSA SS S+SS+  +
Sbjct: 123 PRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLE 182

Query: 118 ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLLRRTVAVGGPGRKTQRRAQ 151
                      G    +  DDV WLHA+FR K  GGPGGG++        P R ++RR Q
Sbjct: 183 LYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVM--------PPRTSRRRRQ 234

[Close]

BLAST of Spg019147 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 58  PRENRSSLQTRELAKTVEIEIPVPDTLPTSAGSSRSSSSSTFQ----------------- 117
           PR NR +L T +L KTVEIE+PVPDTLPTSA SS+S+SS+  +                 
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 118 ---------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLLRRTVAVGGPGRKTQRRAQ 151
                    EG    +  DD+ WLHA+F  K AG PGGG++        P R ++RR Q
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVM--------PPRTSRRRRQ 189

[Close]

BLAST of Spg019147 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 50/122 (40.98%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 56  DRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSST 115
           + PR NRSSLQT EL KT                 VEIE+PVPDTLPTSA S  S+SS+ 
Sbjct: 93  EMPRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTW 152

Query: 116 FQ--------------------------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLL 135
            +                          EG    +  DDV WLH +FR K+AGGPGGG+ 
Sbjct: 153 LELYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAGGPGGGVT 212

[Close]

BLAST of Spg019147 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 51/101 (50.50%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 48  SNARFWLFDRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGS 107
           SN + +L  RPR NR SLQT +L KT                 VEIE+PVPDTLPTSA S
Sbjct: 46  SNQKLYLV-RPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAES 105

Query: 108 SRSSSSSTFQEGQWVSLEDDDVRWLHAIFRTKLAGGPGGGL 132
             S+S ST        +  DDV WLHA+FR K AGGPGGG+
Sbjct: 106 FESNSRST------GIVRGDDVCWLHAVFRAKTAGGPGGGV 139

[Close]

BLAST of Spg019147 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.6e-11
Identity = 52/120 (43.33%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 58  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ 117
           PR NR SLQT EL KT                 VEIE+P+PDTLPTSA SS S+SS+  +
Sbjct: 123 PRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLE 182

Query: 118 ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLLRRTVAVGGPGRKTQRRAQ 151
                      G    +  DDV WLHA+FR K  GGPGGG++        P R ++RR Q
Sbjct: 183 LYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVM--------PPRTSRRRRQ 234

[Close]

BLAST of Spg019147 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.6e-11
Identity = 52/120 (43.33%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 58  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ 117
           PR NR SLQT EL KT                 VEIE+P+PDTLPTSA SS S+SS+  +
Sbjct: 123 PRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLE 182

Query: 118 ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLLRRTVAVGGPGRKTQRRAQ 151
                      G    +  DDV WLHA+FR K  GGPGGG++        P R ++RR Q
Sbjct: 183 LYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVM--------PPRTSRRRRQ 234

[Close]

BLAST of Spg019147 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.6e-11
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 58  PRENRSSLQTRELAKTVEIEIPVPDTLPTSAGSSRSSSSSTFQ----------------- 117
           PR NR +L T +L KTVEIE+PVPDTLPTSA SS+S+SS+  +                 
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 118 ---------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLLRRTVAVGGPGRKTQRRAQ 151
                    EG    +  DD+ WLHA+F  K AG PGGG++        P R ++RR Q
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVM--------PPRTSRRRRQ 189

[Close]

BLAST of Spg019147 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.2e-10
Identity = 50/122 (40.98%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 56  DRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSST 115
           + PR NRSSLQT EL KT                 VEIE+PVPDTLPTSA S  S+SS+ 
Sbjct: 93  EMPRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTW 152

Query: 116 FQ--------------------------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGLL 135
            +                          EG    +  DDV WLH +FR K+AGGPGGG+ 
Sbjct: 153 LELYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAGGPGGGVT 212

The following BLAST results are available for this feature:

BLAST of Spg019147 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060199.1	4.0e-11	50.50	uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0042035.1	1.2e-10	43.33	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK17971.1	1.2e-10	43.33	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0052218.1	2.0e-10	41.18	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0067117.1	1.3e-09	40.98	hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747...	[more]

BLAST of Spg019147 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg019147 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAD1	1.9e-11	50.50	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TKT0	5.6e-11	43.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3D150	5.6e-11	43.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A5A7UAH6	9.6e-11	41.18	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7VIY9	6.2e-10	40.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg019147 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019147.1	Spg019147.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016740	transferase activity