Spg018931 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018931
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 26834533 .. 26835762 (-)
RNA-Seq ExpressionSpg018931
SyntenySpg018931
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTTATGCGAGTCTGACCCATCCATCTTAGAGCAATATGCATTTTTACATTCAACATTGATCTCAGTTGGCTCGGGACCTAAGGAGAAACGCCCTCAAGTCCTATGTAACAAGTTAAGGGAGGTCAATGACAAATTATTGATATGTCCTTTTAATCCCAGGTAAGTATGAAAACCAAGTATATGTTAACATTTTGCACATTTGTTTTTGCTATAACTCTATTGTATGATCATTGTGTATATAGATATCATTGGATATTGTTGGTGATATCAATAAAAACATTCACAATTTATTCAATTGACTCCCTGAGGCATGACTTTCGTGATGATGTAAATAACATAGTTAATACGTGTAAATAGTTATTTTAGCATATGTAAGTTTATTATTTATATTTGTTTAGTATTCTTATTCTTATATTACTGTGTTAGGACTATAAGAATGTTTCATTCTCAGTCTAATTTGTGAAGTCCACCCTTCAAGTGGGTATATGTTACTAGGTAATGACTTTTACTTATTTTTTAGGTCATTTTAATCATATTATACAAATTCTCTTATTACATGTGTTGAACTATATATGTAGTGTGCTCAACAATCGGGATCTACGGAGTGTGGATACTACACTCTTAAATTTATACGAGATATAATATCTCATAGGAGCACAGTGATTACAGATGTGGTACTAATCAATTTAGCCTTGTATTCAACTTAACCTTTTACATTTATTACAATTTTTGTAATGTATTATGTTTACTTATTATTATTTTTTTTTTGTTTGCAGTTGACGAGAGGAACTGCATTTAGTCAATCAGAATTCGATGAGATAAGAGTTGAATTATGTGAATATGTAGTAAAATACATGGGATGATTGTTAATATTATACTTAGTTTTTTTTTATTCGTTTTTAGACAACTTGTTAGACACTGTGATATGTTCTTAGTTTGATGAAATTAATATTATGATTTACTTAAGTTGTGTTCTTAGATAACTTTTTGGTTAATGAAATCTATTATCTTATTATGATTTCACGTTTGGTTGAAATTATGATTCATTTGATTCTATATTTCTATATGAACAATAATGTGTTTGTTACGAGTTCTGACTCGTACTATTTATACTTGAGTTTTGGTGTTACTTTTATATAATGTATTGAACACGTCATGTTATTGTCAAGTGAAATGAAGGTTGTGTTCTGAGTTTAGAAGTGCATATTTATGTTCTTTCAGGTACTAA

mRNA sequence

TACTTATGCGAGTCTGACCCATCCATCTTAGAGCAATATGCATTTTTACATTCAACATTGATCTCAGTTGGCTCGGGACCTAAGGAGAAACGCCCTCAAGTCCTATGTAACAAGTTAAGGGAGGTCAATGACAAATTATTGATATGTCCTTTTAATCCCAGGTACTAA

Coding sequence (CDS)

TACTTATGCGAGTCTGACCCATCCATCTTAGAGCAATATGCATTTTTACATTCAACATTGATCTCAGTTGGCTCGGGACCTAAGGAGAAACGCCCTCAAGTCCTATGTAACAAGTTAAGGGAGGTCAATGACAAATTATTGATATGTCCTTTTAATCCCAGGTACTAA

Protein sequence

YLCESDPSILEQYAFLHSTLISVGSGPKEKRPQVLCNKLREVNDKLLICPFNPRY
Homology
[Close]
BLAST of Spg018931 vs. NCBI nr
Match: KAA0054199.1 (uncharacterized protein E6C27_scaffold131G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 2.9e-07
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 2   LCESDPSILEQYAFLHSTLISVGSGPKEKRPQVLCNKLREVNDKLLICPFN 53
           L ESDPSILE+YAF++   IS G G  E R + LCN+L  + +KLLICPFN
Sbjct: 166 LYESDPSILEEYAFMNPGQISKGLGTDENRARHLCNRLVSIKNKLLICPFN 216

[Close]
BLAST of Spg018931 vs. ExPASy TrEMBL
Match: A0A5A7UL21 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001360 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 2   LCESDPSILEQYAFLHSTLISVGSGPKEKRPQVLCNKLREVNDKLLICPFN 53
           L ESDPSILE+YAF++   IS G G  E R + LCN+L  + +KLLICPFN
Sbjct: 166 LYESDPSILEEYAFMNPGQISKGLGTDENRARHLCNRLVSIKNKLLICPFN 216

The following BLAST results are available for this feature:
BLAST of Spg018931 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054199.12.9e-0758.82uncharacterized protein E6C27_scaffold131G001360 [Cucumis melo var. makuwa][more]
BLAST of Spg018931 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018931 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UL211.4e-0758.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg018931 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018931.1Spg018931.1mRNA