Spg018908 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018908
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold12: 26030228 .. 26032674 (-)
RNA-Seq ExpressionSpg018908
SyntenySpg018908
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAGGAGCGCAAAGAACCGATTAGTGACCCAATACCCCCAAGAAGAACAACCAAGGCCAAAAGGCCGACCTCCAGAGGAATCGGCCAAGAGACCCCATTAAAGGTCGACCAAGCCATGAGGCCAATCTCCATGCAGGTCAGCCAAGGCTTGCATGGCCAATGTAAACCCGGGACTTTCCTTGGAACATTTTCTCTTGTCATCTATTGTGGTTTCATGGTTGGATTAAATTGGTTGGAAGTTATTAATTTAGGAATAAAGAAGAAAGGAAAAGAAAAGAAAAGAATGGAAATAAAGAAGAAAGAAAAGGAAAAAGGAAAAGAAATCAGCAAAACAAAAGAAAAAAAAAAGAGAAAATGAGTGGGAATGGACAGCACAAAAACCCACCACCGACAGCCTTCTTTACCAGCCCATTACCATCCATTTTTCCATAATTTTCCATTCAAATCCTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGATGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGATTTAAGAGGTAAGATTTGAATTTCTTGAAAGTTAGTTCATTTTCTAACAAATTACATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCAGTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGATTATTCAAATTCCTACAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCAAATCTGTGTTGTCTGATTTCGGGGAATTTCTGGGCAAATCGGTTGGGAATCTCATTTTCAATTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATATGTATTTCATTAATTTGGGTTAAGTATTGAGGAAGTTGTGGGTGTTGGAAGGTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGGCAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAAGCACTTCTAAATGATTTTCGGTTTTCCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTCCGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATAGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTGCTAGATTCTTAATGACGGACTTGCGAAATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAGTGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTGTATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATTTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCAGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCCAACCATTAA

mRNA sequence

ATGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTGTATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCAGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCCAACCATTAA

Coding sequence (CDS)

ATGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTGTATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCAGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCCAACCATTAA

Protein sequence

MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH
Homology
[Close]
BLAST of Spg018908 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 87/141 (61.70%), Postives = 93/141 (65.96%), Query Frame = 0 

Query: 2    PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELP 61
            PR NR SLQTGELDKT+SIDYMTEILS RL GTVCTQ                 VEIELP
Sbjct: 1265 PRENRLSLQTGELDKTLSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELP 1324

Query: 62   VPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVS-----------VGSTGIVRGDDVC 115
            VP+TLPTSAE   S+SSTWLEL +ESV  +  F               GS GIVRGDDVC
Sbjct: 1325 VPDTLPTSAEIFESNSSTWLELYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVC 1384

[Close]
BLAST of Spg018908 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 78/125 (62.40%), Postives = 83/125 (66.40%), Query Frame = 0 

Query: 2   PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSS 61
           PRGNR SLQTGELDKT+     T      L         IELPVP+TLPTSAESS S+SS
Sbjct: 63  PRGNRLSLQTGELDKTVIFSLST------LSVLRDNNAVIELPVPDTLPTSAESSGSNSS 122

Query: 62  TWLELCIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP 113
           TWLEL  ESV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK  GGP
Sbjct: 123 TWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGP 181

[Close]
BLAST of Spg018908 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 8.9e-27
Identity = 78/126 (61.90%), Postives = 83/126 (65.87%), Query Frame = 0 

Query: 1   MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSS 60
           MPRGNR SLQT ELDKT+     T      L       V IELPVP+ LPTSAESS S+S
Sbjct: 77  MPRGNRLSLQTRELDKTVIFPLST------LSVLRDNNVVIELPVPDILPTSAESSGSNS 136

Query: 61  STWLELCIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGG 113
           STWLEL  ESV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK  GG
Sbjct: 137 STWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGG 196

[Close]
BLAST of Spg018908 vs. NCBI nr
Match: TYK01784.1 (hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-26
Identity = 75/132 (56.82%), Postives = 81/132 (61.36%), Query Frame = 0 

Query: 1   MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIEL 60
           +PRGNR +LQTGELDKT+SIDY+TEILS RLYGTVCTQ                 VEIEL
Sbjct: 638 LPRGNRPNLQTGELDKTLSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIEL 697

Query: 61  PVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKL 116
            VP+TLPTSAESS S S                      S GIVRGDDVCWLH VFRAK 
Sbjct: 698 LVPDTLPTSAESSESKSR---------------------SVGIVRGDDVCWLHVVFRAKT 748

[Close]
BLAST of Spg018908 vs. NCBI nr
Match: KAA0052217.1 (hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-26
Identity = 75/132 (56.82%), Postives = 81/132 (61.36%), Query Frame = 0 

Query: 1   MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIEL 60
           +PRGNR +LQTGELDKT+SIDY+TEILS RLYGTVCTQ                 VEIEL
Sbjct: 638 LPRGNRPNLQTGELDKTLSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIEL 697

Query: 61  PVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKL 116
            VP+TLPTSAESS S S                      S GIVRGDDVCWLH VFRAK 
Sbjct: 698 LVPDTLPTSAESSESKSR---------------------SVGIVRGDDVCWLHVVFRAKT 748

[Close]
BLAST of Spg018908 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.2e-33
Identity = 87/141 (61.70%), Postives = 93/141 (65.96%), Query Frame = 0 

Query: 2    PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELP 61
            PR NR SLQTGELDKT+SIDYMTEILS RL GTVCTQ                 VEIELP
Sbjct: 1265 PRENRLSLQTGELDKTLSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELP 1324

Query: 62   VPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVS-----------VGSTGIVRGDDVC 115
            VP+TLPTSAE   S+SSTWLEL +ESV  +  F               GS GIVRGDDVC
Sbjct: 1325 VPDTLPTSAEIFESNSSTWLELYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVC 1384

[Close]
BLAST of Spg018908 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 78/125 (62.40%), Postives = 83/125 (66.40%), Query Frame = 0 

Query: 2   PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSS 61
           PRGNR SLQTGELDKT+     T      L         IELPVP+TLPTSAESS S+SS
Sbjct: 63  PRGNRLSLQTGELDKTVIFSLST------LSVLRDNNAVIELPVPDTLPTSAESSGSNSS 122

Query: 62  TWLELCIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP 113
           TWLEL  ESV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK  GGP
Sbjct: 123 TWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGP 181

[Close]
BLAST of Spg018908 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.3e-27
Identity = 78/126 (61.90%), Postives = 83/126 (65.87%), Query Frame = 0 

Query: 1   MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSS 60
           MPRGNR SLQT ELDKT+     T      L       V IELPVP+ LPTSAESS S+S
Sbjct: 77  MPRGNRLSLQTRELDKTVIFPLST------LSVLRDNNVVIELPVPDILPTSAESSGSNS 136

Query: 61  STWLELCIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGG 113
           STWLEL  ESV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK  GG
Sbjct: 137 STWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGG 196

[Close]
BLAST of Spg018908 vs. ExPASy TrEMBL
Match: A0A5A7UCL6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00280 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.6e-27
Identity = 75/132 (56.82%), Postives = 81/132 (61.36%), Query Frame = 0 

Query: 1   MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIEL 60
           +PRGNR +LQTGELDKT+SIDY+TEILS RLYGTVCTQ                 VEIEL
Sbjct: 638 LPRGNRPNLQTGELDKTLSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIEL 697

Query: 61  PVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKL 116
            VP+TLPTSAESS S S                      S GIVRGDDVCWLH VFRAK 
Sbjct: 698 LVPDTLPTSAESSESKSR---------------------SVGIVRGDDVCWLHVVFRAKT 748

[Close]
BLAST of Spg018908 vs. ExPASy TrEMBL
Match: A0A5D3BRJ2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00120 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.6e-27
Identity = 75/132 (56.82%), Postives = 81/132 (61.36%), Query Frame = 0 

Query: 1   MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIEL 60
           +PRGNR +LQTGELDKT+SIDY+TEILS RLYGTVCTQ                 VEIEL
Sbjct: 638 LPRGNRPNLQTGELDKTLSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIEL 697

Query: 61  PVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKL 116
            VP+TLPTSAESS S S                      S GIVRGDDVCWLH VFRAK 
Sbjct: 698 LVPDTLPTSAESSESKSR---------------------SVGIVRGDDVCWLHVVFRAKT 748

The following BLAST results are available for this feature:
BLAST of Spg018908 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08952.11.1e-3261.70DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK11835.12.3e-2762.40uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
KAA0058280.18.9e-2761.90uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
TYK01784.11.2e-2656.82hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa][more]
KAA0052217.11.2e-2656.82hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa][more]
BLAST of Spg018908 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018908 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CCC75.2e-3361.70DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3CJX31.1e-2762.40CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7UT174.3e-2761.90CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7UCL65.6e-2756.82Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3BRJ25.6e-2756.82Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of Spg018908 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018908.1Spg018908.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016740 transferase activity