Spg018865 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018865
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold3: 21910754 .. 21911899 (+)
RNA-Seq Expression	Spg018865
Synteny	Spg018865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGACCCCACTATGACAAAGACGATAGGAGCGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGATCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATATTTAATAACGTACTTGCGAGTTATTTGAGAAAGCTTTTATCGTTACACGTTTATGTTAAATGCTTGATTGAATAGATTTATACGCTTAAAGGTTTATCACGTGTTACGATTTGCTAATCTACAGTTTTAATGTTAGTCACTCACTAGGCTCCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATGTAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGGTTGTGATACCTATATCAGGTTATTTTCCAAACCGAGTATGTCAGGGCTACACCTCGTGTATGTTGGATGGTTTTCAGGGATTCCGCTGTGTTGTGGTTCATATAGAATATTTTATATCTAAGATTAGTACGTTTATCAGGTTCAATGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGTTACCAGGTGGTCCGGGAGGGGGTGTGACACTCTTTCTCTGATTCTGATGTCGACCCTAACCACCTTGACATGTCCCGCTTTTTGCTTACGGCGGCGGCGACGTGGTGGTTCCAGCACAATCTCCGCCTGAACCTGCTGCTCTTGACCGTTCCCTTGTTCCAACACATCCTCTGCTTGCTTTTCCTGAATTTCCCTCTGAACTTCAGCTGCTTGATCACCCTGCTCTGTATTTTTCCCCTCTTCTTGTTCCTTCGACTTCTCTCCTCCAGCCGCTACTTCAGGTTCTTTAG

mRNA sequence

ATGACTAAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAATGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGTTACCAGGTGGTCCGGGAGGGGCACAATCTCCGCCTGAACCTGCTGCTCTTGACCGTTCCCTTGTTCCAACACATCCTCTGCTTGCTTTTCCTGAATTTCCCTCTGAACTTCAGCTGCTTGATCACCCTGCTCTGTATTTTTCCCCTCTTCTTGTTCCTTCGACTTCTCTCCTCCAGCCGCTACTTCAGGTTCTTTAG

Coding sequence (CDS)

ATGACTAAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAATGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGTTACCAGGTGGTCCGGGAGGGGCACAATCTCCGCCTGAACCTGCTGCTCTTGACCGTTCCCTTGTTCCAACACATCCTCTGCTTGCTTTTCCTGAATTTCCCTCTGAACTTCAGCTGCTTGATCACCCTGCTCTGTATTTTTCCCCTCTTCTTGTTCCTTCGACTTCTCTCCTCCAGCCGCTACTTCAGGTTCTTTAG

Protein sequence

MTKILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGGAQSPPEPAALDRSLVPTHPLLAFPEFPSELQLLDHPALYFSPLLVPSTSLLQPLLQVL

Homology

[Close]

BLAST of Spg018865 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-15
Identity = 55/104 (52.88%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ 60
           MT+ILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+ L+
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGAQSPP 78
              E   V +        EDDV WLHA+FR +  GGPGG   PP
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGVMPP 104

[Close]

BLAST of Spg018865 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-15
Identity = 55/104 (52.88%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ 60
           MT+ILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+ L+
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGAQSPP 78
              E   V +        EDDV WLHA+FR +  GGPGG   PP
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGVMPP 104

[Close]

BLAST of Spg018865 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-10
Identity = 51/107 (47.66%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS---- 60
           MT+ILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS ++SS    
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61  ---SMLQEGQRVSLEE------DDVRWLHAIFRTELPGGPGGAQSPP 78
              S L     +S+E       DDV WLHA+FR +  GGP G   PP
Sbjct: 61  QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGVMPP 107

[Close]

BLAST of Spg018865 vs. NCBI nr
Match: TYK14494.1 (uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 8.5e-10
Identity = 45/89 (50.56%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 1  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ 60
          MT+ILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++S S   
Sbjct: 1  MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSRS--- 60

Query: 61 EGQRVSLEEDDVRWLHAIFRTELPGGPGG 73
                +  DDV WLH++FR +   GPGG
Sbjct: 61 ---AGIVRRDDVCWLHSVFRAKTASGPGG 83

[Close]

BLAST of Spg018865 vs. NCBI nr
Match: TYK00848.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 47/89 (52.81%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 1  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ 60
          MT+ILS RLYG VCTQ                 VEIEL VPDTLPTSAES R++S S   
Sbjct: 14 MTEILSLRLYGIVCTQVIFSLSTLSVLHDNDAVVEIELLVPDTLPTSAESFRSNSRS--- 73

Query: 61 EGQRVSLEEDDVRWLHAIFRTELPGGPGG 73
                +  DDV WLHAIFR +  GGPGG
Sbjct: 74 ---AGIVRGDDVCWLHAIFRAKTAGGPGG 96

[Close]

BLAST of Spg018865 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 55/104 (52.88%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ 60
           MT+ILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+ L+
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGAQSPP 78
              E   V +        EDDV WLHA+FR +  GGPGG   PP
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGVMPP 104

[Close]

BLAST of Spg018865 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 55/104 (52.88%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ 60
           MT+ILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+ L+
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGAQSPP 78
              E   V +        EDDV WLHA+FR +  GGPGG   PP
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGVMPP 104

[Close]

BLAST of Spg018865 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.3e-11
Identity = 51/107 (47.66%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS---- 60
           MT+ILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS ++SS    
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61  ---SMLQEGQRVSLEE------DDVRWLHAIFRTELPGGPGGAQSPP 78
              S L     +S+E       DDV WLHA+FR +  GGP G   PP
Sbjct: 61  QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGVMPP 107

[Close]

BLAST of Spg018865 vs. ExPASy TrEMBL
Match: A0A5D3CU23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00050 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.1e-10
Identity = 45/89 (50.56%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 1  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ 60
          MT+ILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++S S   
Sbjct: 1  MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSRS--- 60

Query: 61 EGQRVSLEEDDVRWLHAIFRTELPGGPGG 73
                +  DDV WLH++FR +   GPGG
Sbjct: 61 ---AGIVRRDDVCWLHSVFRAKTASGPGG 83

[Close]

BLAST of Spg018865 vs. ExPASy TrEMBL
Match: A0A5D3BP54 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00090 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-10
Identity = 47/89 (52.81%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 1  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ 60
          MT+ILS RLYG VCTQ                 VEIEL VPDTLPTSAES R++S S   
Sbjct: 14 MTEILSLRLYGIVCTQVIFSLSTLSVLHDNDAVVEIELLVPDTLPTSAESFRSNSRS--- 73

Query: 61 EGQRVSLEEDDVRWLHAIFRTELPGGPGG 73
                +  DDV WLHAIFR +  GGPGG
Sbjct: 74 ---AGIVRGDDVCWLHAIFRAKTAGGPGG 96

The following BLAST results are available for this feature:

BLAST of Spg018865 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27998.1	6.7e-15	52.88	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	6.7e-15	52.88	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01041.1	1.7e-10	47.66	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]
TYK14494.1	8.5e-10	50.56	uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]	[more]
TYK00848.1	1.1e-09	52.81	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg018865 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg018865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX39	3.3e-15	52.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	3.3e-15	52.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3BMJ4	8.3e-11	47.66	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CU23	4.1e-10	50.56	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BP54	5.4e-10	52.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0009...	[more]

BLAST of Spg018865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018865.1	Spg018865.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity