Spg018798 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018798
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationscaffold3: 5155425 .. 5160798 (-)
RNA-Seq ExpressionSpg018798
SyntenySpg018798
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCCTGTTTATTCGGGCTTATCCTTAGATCTGCATGGGTGAGAGTGGCTCAGCATCACCGACTCAATAAGCCTCCCATTTCAGGGATAGGAACAGGTAGATAGTTGGGGACATAGTCCTACGAGAAGGAATTCACTCCTACCCAAATTAGGGATAGTAGAGAGGTTGCTCCCTTAAGTGCTGACTCTGGGGCTTGAACAAAGGGATCCTGCCCTCTCATTGGCTTGAGAGGGACTCGGTTTATTGGTTGGACCATAAACCAATTGTTCATTAGAGGATCAGTAGGACGTAAGGAACAAGAAGTACTATAGGGGTAAAACGGACATTTGACCCAACTATAGTTACGAACAACCTGTGAAGGATCGACTTACTAATCATGGTTATATCAGGTGGACAAAAATATATCTACAGTGAGGGGAGTGCAGCTACTGGGCTATAGTGGAGTGTCCCGGTAGTTAACGAATGTTGGTTAGTTAGGCTAAAGTGTTTGAGGGTCATCTAGAAGGTCTACGTCTACGAGATATGTATGTCTTTTGATCTAGGGCAAGTGGGAGATGTATAATGGGTATAAGGATGCCCTAGTTCATTGTATTATTATAGTATATTTACTTTATGTAATATACAATACACATGACATTTCCAGCTTTAGATTGTTGCATTTACATCCACTTAACTAGAGTTTTAGTTCAAGTGGGAGTTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAATGATTGACCGAATATTAATGAAATGATATTGATGTATTATTCAATTCAGAATTATTATTTGTATTATGCTTGTCTTGCCTAAATAATCCTAATCCAATAAACTAGACATTTTAGGTTGTAGTATGAGTCTTGAACTGTATGTGGAGACATACGGGGATCACTGTTCAAGATACTACCTAAAGGGTCTATAGTATAGGGATAAGACTGGGTGCCTTATCCTGATGACACTATGGATACGACCCACTTTGTATTTGATACAAACGCCATGATCCAACACGTTCGTGTAGGAGACATGCGAGTGGAGGTATCCTATGCAATGTGTAAACCCAAGACTTCCCTTGGATTATTTGCTCTTGTCACATATTGTAGGAAGTTGGATTAAGATTGTTGTTTCATTGTAGAAGAAAAATGGCAAAGCTTTTGGTTGAGGTTGTCTTTGATAATTTTGGAATTTATTAATTTTAAAAAAAAAAAGAGAAAAGAAAGGAAAGGAAATAAAGAAAAAGAAAAGAAAAAAAAAGAAGAAAAGAAAAGAGGAAAGAAGTTGTTCGGTACTAGTGGTAAAAAGAGAAAATCCACCACCGCTTCAGGTATTTCCACTCATTTTCTTCATCATTTCCCATCAAATTTCAGAACCTTTCGAGAGAGAGAGTGAAGGAAGAAGAAGAGGGAGCTTGTTGGAGTTTTGAGGATGAAGATGAGAGGGGAAAGCTCATGCAAGTGCAACCATGGCAGAATCTTGGTTCAATCTGCCCATCTTTGGTTTTTAATTCGGTTTGAGCTACACAAGAAGATTTAAGAGGTGAGGCCTGACTTTCCTGAATTTAATTCATTTCCTAGAAAATTTTAATGAAGGAAGCTTGAGCTAATTTTGATGTTAAGTTAATGGTTTTTGAAGAGGAAAACAGAGCACAAAATTTTCATGCAAATCTGAAGGGTCTTTGGTTTTCTCGAGTTTTTCGAACGTTCTGGGGTGTACAGGTTGAATTAGAAGCTCAATTTGGTATGGTTGGAAAGCGTATTTAGTTTCCTATGACTTTTATGAAGAATTCGTGAGCCAAAAATGACTGGCAATAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAGAAGCACAAATTTGGATTAGCTGTGTTCGGGGGATTTCTGGACAAATCCGTTGGAAATCTCATTGTCATTCCTTGAAGTAAGTTGTAGAGGGTTTCAATATGAAGAGTTTGATATATAGTACATTAATGTTGGTCAAGTATTGAGGACGTTATGAGTGTTTGAAGTTAGGGTATTCAATCTGGAAAATCTGGAAAAGTGTGGAATGTAATTTTAATTCTAGAGTTTAGGATTCATGAGCATAGAAAGACAAGACTATTTAAGTGTCTGATGCTCGGTGTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGCCGAGTGTACAGACCAGGGAACTAGCCAAGGCTGTGAGTGACAAAACAAATTTCGAAAATTATTTCTAAACTGTTATTTATGATTAAATGTCTTACATGCTTGAATCTGAACTTATGAATACTACATGATTTCTATGAATGGTTTCAAGCATAAGTTTCGAGCTTAGATTTTCTAATGAGATTTATATGTTAGCACGTGATTATTGACTTTCTGAAAAGTAGTTGAAACAATATCATTTTAAGCAAAGTATGTATTAGCGAGTATTGTTTAAAGATTTTCAGTTTTTCACGAGCAAGCTAAGTAAGCTGGAGTTTTACGAAAGATAAAGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGACTTCTATTGACTACATGACTTAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGAAAACGATGCTGTCGTGAGTGCTGGGCGGGCCCTACTACAACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTATATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCTGTCATGTTAATTAAAATGTTTGATATACTTGATATGTCTTGCTAGATTTTAATGACGTACTCGCAGAGTATTTGATAAAGCTTTTATCATTACACGTTTATATTTCACGCTTTGACTAAACAGATTTATATGTTAAAGGTTTATCATGTGTTCTGATTTGCGGATTAACAGTTTTAAATTTAGTCACTCACTGGGCTTCATAACTCACTCTTTCAAAATGTTTTTCCACTTTCCAGGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCATAGTCTGCTAACAGCTCCCAGATCAAGTTCCAGTACGTGGGTGGAGTTGTACATCGAGTCTGTTTATATTGTAAATGTCTTTGTAAGGATTCGATAGTTTACGGCTTGTGTAAGCTCTAGATGTTGTAGTTGTGTAAACCCTAGTTGGATATGTTTTTGGTTGTGATATCTCTATCAGGTTTATTTTCCAAATTGAGTTAAGTCAGGGTTGCGCTTCTTGTATGTCTAAAGACTATCAAGGTTCCGCTGTGTTGTGTTGCATGTAAAGTATTCCATATCTAAGATAGCATGTTTATCAGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTCCCGGACTAAGTTAGCATGTAGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAGTTCCATGGGAAATGAGAGAGAGCAGTTAGCGCTAAGAAGAAACTAGGAAGTAAATAGTTAGATGTTGAGTCAGTTCATAGAATTAGTAGAGTATGGTCCAAGTAGGGATAAGAGTAAGTCCAGTCAGGACCAGAATGTGGGTAGAAGTTTAGTATCATGCATTTGAGTTAAGTATCTATAGCATGTGTATCTATAGCATGTCTGATGTACGGATATGTTATAGGAGTCATGCCACCACGTACCAGCAGACGACACAGGCAGAATCAGAACTGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGATCCAATACCCCGAGAGTTCAGACTGGGGCAGGAAACGAGCAGTTTGCTAGATCTGCATAGGAGGTCGGTAGGCCAGAGAGAGCAGGGCCTAGTGATCCGGAAAAGATGTATGGAATAGAACGACCGAAGGAATTAGGAGCCATAGTGTTTGAGGGTTCCACAGAGCTGGCTGACGCCGAGGTTTGGTTAAATATGCTTGAGAAATGCTTTAATGTGATGAGCTGTCCTGAGGAACGAAAAGTCAGATTGGCCACATTCCTGCTGCAGAAAGAGGCAAAGGGATGGTGGAAATCCATATTATAGTCAGGCGCAGTGATGCACGTACCTTAGACTGGCAGAATTTCAGAGGCATATTCAAAGACAAATATTATCCTAGCACATACTGTGACGCAAAGAGGGATGAGTTTCTGGGGTTGAAGCAAGGGTCACTTTCAGTGGCCGAGTACGAGAGAAAGTATACTGAGCTTTCACGGTATGCTGAAGTGATTGTGGCATTTGAGAGTGACAAGTGTCGAAGGTTTGAAAGAGGGTTGCGTTTTGACATACGTACCCCGGTTACAGCTATTGCTAAGTGGACGGATTTTTCTCAGTTAGTAGAGACTCGTCTATGTGTGGAGCAGAGTCTAACAGAAGAGAAGTCATTAGTGGAGCCCAGTCGTGGGGCTTCAACAGCTAACAGTTTCTGAGGTCATGAGCAGCGGAGGTTCACACTTGGAGTGAATGTTTCAGGCTTTCAAGACTTTAAGCGTCAATCTGGTGGCCAGTCATCGAGGCAGATGAGTTCAGGTAGTGCCTATTAGAGGCAGATCCAGAAAGCACCCAGTCAGTCTGCTAGTTCAGCAGCAAGACTGCAGACGAGTCAGAAGTCCGTTGCAAGTGAAACCAGGCGAACCCCATGTGCGAGTTGTGGCAGGAATCATCGGGGTCAGTGTCTTGTAAGTGCCGGTGTGTGTTACCAGTGTGGATAGCCAGGGCATTTCAAGAGAGATTGTCCACAGTTGAGAGCATTAGTTCAAAGGGACCAGGGAGTTGAGTCCCAGAAAGTTGAGCAGCCGAGAGTTTCAGCAACTGAAGGAGAGGGTGATAGGACCTAAATAGTCCTATTTTTTCTCCTCTAATCTAAGCTTGTTAGAGTTATTTTATGTTTTACTTGTCCTATTTACAAGTTAATTTAGCTTAGGTCGTGTCGGGAGTCGATCACGCTAATTGGTGTTAATTCGGGTCAATTACGGAGTTTTTGGAGCCATCTCGATGTCTTGGATGGAGAGGAGGTGAAGAGACCCAATTGTGCTGAAGCGGGCCTGAATTATGACACCGAAAGCCAAAGATTGAAGCCCCGAACCGAGAAGAAGCGAGACAAGACCGAGAAAAAGAGCAGAAAGTCGAGATTAGAGGCTAGTGTCTCGACGCCGGTCTTATGGTCTCGACGCCGACGCGATTTCGGGCCAAAGGCAAAAGTATGCAGCGTCGAGACGCTGTGCCCTGGCGTCTCGACGTCGGCTTGTTTCTATATATATTAGGTCTCGGTTTAGTCCGCCGTTAGGTTAGAATTTGGGTCCCTTTTACGATTTCTTTGCCTCTTTTACTTTCCAGCATCTTTGTAG

mRNA sequence

ATGAACTCCTGTTTATTCGGGCTTATCCTTAGATCTGCATGGGTGAGAGTGGCTCAGCATCACCGACTCAATAAGCCTCCCATTTCAGGGATAGGAACAGGAGACATGCGAGTGGAGAACCTTTCGAGAGAGAGAGTGAAGGAAGAAGAAGAGGGAGCTTGTTGGAGTTTTGAGGATGAAGATGAGAGGGGAAAGCTCATGCAAGTTGAATTAGAAGCTCAATTTGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGAAAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCATAG

Coding sequence (CDS)

ATGAACTCCTGTTTATTCGGGCTTATCCTTAGATCTGCATGGGTGAGAGTGGCTCAGCATCACCGACTCAATAAGCCTCCCATTTCAGGGATAGGAACAGGAGACATGCGAGTGGAGAACCTTTCGAGAGAGAGAGTGAAGGAAGAAGAAGAGGGAGCTTGTTGGAGTTTTGAGGATGAAGATGAGAGGGGAAAGCTCATGCAAGTTGAATTAGAAGCTCAATTTGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGAAAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCATAG

Protein sequence

MNSCLFGLILRSAWVRVAQHHRLNKPPISGIGTGDMRVENLSRERVKEEEEGACWSFEDEDERGKLMQVELEAQFDIEPEAIWYRVHTGYIPLLTLSVLRENDAVVEIELPVPDKLP
Homology
[Close]
BLAST of Spg018798 vs. NCBI nr
Match: KAA0035087.1 (putative signal anchor [Cucumis melo var. makuwa] >TYK03593.1 putative signal anchor [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-10
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 67  MQVELEAQFDIEPEAIWYRVHTGYIPLLTLSVLRENDAVVEIELPVPDKLP 118
           + +ELE+ FD+EPEA  YRVHTGYI LLTLSVL +NDA+VE+E  VPDK+P
Sbjct: 110 VSMELESVFDLEPEARGYRVHTGYISLLTLSVLHDNDAIVEVEFLVPDKVP 160

[Close]
BLAST of Spg018798 vs. NCBI nr
Match: KAA0032980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21988.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 72  EAQFDIEPEAIWYRVHTGYIPLLTLSVLRENDAVVEIELPVPDKL 117
           + + D+EPEA  YRVHTGY+PLLTLSVLR+NDA+VEIE  VP++L
Sbjct: 627 QEEIDLEPEARGYRVHTGYVPLLTLSVLRDNDAIVEIEFRVPNRL 671

[Close]
BLAST of Spg018798 vs. NCBI nr
Match: KAA0025774.1 (hypothetical protein E6C27_scaffold34G00210 [Cucumis melo var. makuwa] >TYK09680.1 hypothetical protein E5676_scaffold447G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-08
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 76  DIEPEAIWYRVHTGYIPLLTLSVLRENDAVVEIELPVPDKLP 118
           D+EP+A  YRVHTGY+ LLTLSVL +NDAVVEIE PVPD+LP
Sbjct: 165 DLEPKARGYRVHTGYVLLLTLSVLLDNDAVVEIEFPVPDRLP 206

[Close]
BLAST of Spg018798 vs. NCBI nr
Match: KAA0037923.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK19000.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-05
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 73  AQFDIEPEAIWYRVHTGYIPLLTLSVLRENDAV 106
           AQ ++EPEAIWYRVH G+IPLLTLSVLR ND V
Sbjct: 133 AQDNVEPEAIWYRVHIGWIPLLTLSVLRNNDVV 165

[Close]
BLAST of Spg018798 vs. NCBI nr
Match: KAA0061963.1 (hypothetical protein E6C27_scaffold89G002570 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-04
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 89  GYIPLLTLSVLRENDAVVEIELPVPDKLP 118
           GY+PLLTLS+L ENDA+VEIE PVPD+LP
Sbjct: 72  GYVPLLTLSILHENDAIVEIEFPVPDRLP 100

[Close]
BLAST of Spg018798 vs. ExPASy TrEMBL
Match: A0A5A7T0I0 (Putative signal anchor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00040 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 67  MQVELEAQFDIEPEAIWYRVHTGYIPLLTLSVLRENDAVVEIELPVPDKLP 118
           + +ELE+ FD+EPEA  YRVHTGYI LLTLSVL +NDA+VE+E  VPDK+P
Sbjct: 110 VSMELESVFDLEPEARGYRVHTGYISLLTLSVLHDNDAIVEVEFLVPDKVP 160

[Close]
BLAST of Spg018798 vs. ExPASy TrEMBL
Match: A0A5A7SPZ6 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00180 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 72  EAQFDIEPEAIWYRVHTGYIPLLTLSVLRENDAVVEIELPVPDKL 117
           + + D+EPEA  YRVHTGY+PLLTLSVLR+NDA+VEIE  VP++L
Sbjct: 627 QEEIDLEPEARGYRVHTGYVPLLTLSVLRDNDAIVEIEFRVPNRL 671

[Close]
BLAST of Spg018798 vs. ExPASy TrEMBL
Match: A0A5A7SJC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00850 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 76  DIEPEAIWYRVHTGYIPLLTLSVLRENDAVVEIELPVPDKLP 118
           D+EP+A  YRVHTGY+ LLTLSVL +NDAVVEIE PVPD+LP
Sbjct: 165 DLEPKARGYRVHTGYVLLLTLSVLLDNDAVVEIEFPVPDRLP 206

[Close]
BLAST of Spg018798 vs. ExPASy TrEMBL
Match: A0A5A7T4K8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00260 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 73  AQFDIEPEAIWYRVHTGYIPLLTLSVLRENDAV 106
           AQ ++EPEAIWYRVH G+IPLLTLSVLR ND V
Sbjct: 133 AQDNVEPEAIWYRVHIGWIPLLTLSVLRNNDVV 165

[Close]
BLAST of Spg018798 vs. ExPASy TrEMBL
Match: A0A5A7V1D5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002570 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 89  GYIPLLTLSVLRENDAVVEIELPVPDKLP 118
           GY+PLLTLS+L ENDA+VEIE PVPD+LP
Sbjct: 72  GYVPLLTLSILHENDAIVEIEFPVPDRLP 100

The following BLAST results are available for this feature:
BLAST of Spg018798 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035087.13.4e-1068.63putative signal anchor [Cucumis melo var. makuwa] >TYK03593.1 putative signal an... [more]
KAA0032980.12.5e-0868.89DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21988.1 D... [more]
KAA0025774.14.2e-0876.19hypothetical protein E6C27_scaffold34G00210 [Cucumis melo var. makuwa] >TYK09680... [more]
KAA0037923.14.4e-0578.79putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
KAA0061963.16.3e-0479.31hypothetical protein E6C27_scaffold89G002570 [Cucumis melo var. makuwa][more]
BLAST of Spg018798 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018798 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T0I01.7e-1068.63Putative signal anchor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7SPZ61.2e-0868.89DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SJC72.0e-0876.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T4K82.1e-0578.79Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15... [more]
A0A5A7V1D53.0e-0479.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg018798 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018798.1Spg018798.1mRNA