Spg018788 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018788
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold3: 6814861 .. 6815196 (+)
RNA-Seq Expression	Spg018788
Synteny	Spg018788

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCGATTGCGATCCTGGTTCTGCTGCTGAACCCAACCATTTCCGATGCCGCCGTCAACGACACCGTGTCCAAGTGGTGCGACGGCGGCCTGGAAAACTGCCTCGTGGGCGACCTGAACTCCGATTCGGAGTTTCTGATGGGGACAGAGTCCAGCCAGATGCTGCAGCAGTCCATTAATTTCCAAACTTCCAACACCAACAACGCTAACCAACAATCGGTTCCGGCATGTGGTCGGCCGTCGACGCGATACGACAGCTGCCTCGGCGATAAGAGGGAGATCCCGAAATCTGAACATTGCGACACCTTTCAGCGCGTCCCCTGTTCTTGA

mRNA sequence

ATGGCAATGGCGATTGCGATCCTGGTTCTGCTGCTGAACCCAACCATTTCCGATGCCGCCGTCAACGACACCGTGTCCAAGTGGTGCGACGGCGGCCTGGAAAACTGCCTCGTGGGCGACCTGAACTCCGATTCGGAGTTTCTGATGGGGACAGAGTCCAGCCAGATGCTGCAGCAGTCCATTAATTTCCAAACTTCCAACACCAACAACGCTAACCAACAATCGGTTCCGGCATGTGGTCGGCCGTCGACGCGATACGACAGCTGCCTCGGCGATAAGAGGGAGATCCCGAAATCTGAACATTGCGACACCTTTCAGCGCGTCCCCTGTTCTTGA

Coding sequence (CDS)

ATGGCAATGGCGATTGCGATCCTGGTTCTGCTGCTGAACCCAACCATTTCCGATGCCGCCGTCAACGACACCGTGTCCAAGTGGTGCGACGGCGGCCTGGAAAACTGCCTCGTGGGCGACCTGAACTCCGATTCGGAGTTTCTGATGGGGACAGAGTCCAGCCAGATGCTGCAGCAGTCCATTAATTTCCAAACTTCCAACACCAACAACGCTAACCAACAATCGGTTCCGGCATGTGGTCGGCCGTCGACGCGATACGACAGCTGCCTCGGCGATAAGAGGGAGATCCCGAAATCTGAACATTGCGACACCTTTCAGCGCGTCCCCTGTTCTTGA

Protein sequence

MAMAIAILVLLLNPTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQSINFQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQRVPCS

Homology

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BLAST of Spg018788 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 70/111 (63.06%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 2   AMAIAILVLLLN-PTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQS 61
           +M I  ++LLLN PTIS AA+N T ++WCDG LENCL+GDLNSDSEFLM TE+S+ML   
Sbjct: 16  SMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDF 75

Query: 62  INFQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQRV-PC 111
            +FQT NTNN ++QS P C RP  RYDSCLG K  IP  E+CDT  RV PC
Sbjct: 76  NSFQTPNTNNPDKQSAPECNRP-PRYDSCLGQKTSIPNPENCDTRNRVNPC 125

[Close]

BLAST of Spg018788 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 6.5e-27
Identity = 69/111 (62.16%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 2   AMAIAILVLLLN-PTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQS 61
           +M I  ++LLLN PTIS AA+N T ++WCDG LENCL+GDLNSDSEFLM TE+S+ML   
Sbjct: 16  SMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDF 75

Query: 62  INFQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQRV-PC 111
            +FQT NTNN ++QS P C RP  RYD CLG K  IP  E+CDT  RV PC
Sbjct: 76  NSFQTPNTNNPDKQSAPECNRP-PRYDGCLGQKNIIPNPENCDTRNRVNPC 125

[Close]

BLAST of Spg018788 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_014747 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 73/112 (65.18%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 2   AMAIAILVLLLNPTISDAAVNDTVSKWCDG-GLENCLVGDLNSDSEFLMGTESSQML-QQ 61
           +MA  I +LLLNP IS+A +NDT SKWCD  GLENCLVGDLNS SEFLM TESS ML  Q
Sbjct: 17  SMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTESSGMLVDQ 76

Query: 62  SINFQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQRV-PC 111
            + FQT   N+AN++SVP C RP  RYDSCLG KR IP  E C T  RV PC
Sbjct: 77  FLTFQTPKANDANKESVPDCSRP-PRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of Spg018788 vs. NCBI nr
Match: KAA0042447.1 (hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK03509.1 hypothetical protein E5676_scaffold121G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-21
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 3   MAIAILVLLLNPTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQSIN 62
           MAI IL+LL N    +  VN+T  +WC G  ENCL+GD +SDSEFLM T++S+ML    N
Sbjct: 10  MAIIILILLFNTIGCNTTVNETAPEWCYGS-ENCLIGDESSDSEFLMETDTSRMLLDFQN 69

Query: 63  FQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQRV-PC 111
            QT +TNN N+QSVP CGRP  RYDSC+G+KR I   E+CD   R  PC
Sbjct: 70  LQTPSTNNPNRQSVPECGRP-PRYDSCIGEKRSISNPENCDVRNRENPC 116

[Close]

BLAST of Spg018788 vs. NCBI nr
Match: KAE8649335.1 (hypothetical protein Csa_014907 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 3   MAIAILVLLLNPTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQSIN 62
           MAI IL LL NPT  +  VN+T S+WC G  ENCLVGD + DSEFLM TE+S+ML    N
Sbjct: 10  MAILILTLLFNPTRCNTTVNETTSEWCYGS-ENCLVGDESLDSEFLMETETSRMLLDFQN 69

Query: 63  FQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQR 108
            QT  T + N+QSV  CGRP  RYDSC G++R+IP  E+CD   R
Sbjct: 70  LQTPGTIDPNRQSVAECGRP-PRYDSCTGEERQIPNPENCDVRNR 112

[Close]

BLAST of Spg018788 vs. ExPASy TrEMBL
Match: A0A0A0KW62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 73/112 (65.18%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 2   AMAIAILVLLLNPTISDAAVNDTVSKWCDG-GLENCLVGDLNSDSEFLMGTESSQML-QQ 61
           +MA  I +LLLNP IS+A +NDT SKWCD  GLENCLVGDLNS SEFLM TESS ML  Q
Sbjct: 17  SMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTESSGMLVDQ 76

Query: 62  SINFQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQRV-PC 111
            + FQT   N+AN++SVP C RP  RYDSCLG KR IP  E C T  RV PC
Sbjct: 77  FLTFQTPKANDANKESVPDCSRP-PRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of Spg018788 vs. ExPASy TrEMBL
Match: A0A5D3BZL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001310 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 3   MAIAILVLLLNPTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQSIN 62
           MAI IL+LL N    +  VN+T  +WC G  ENCL+GD +SDSEFLM T++S+ML    N
Sbjct: 10  MAIIILILLFNTIGCNTTVNETAPEWCYGS-ENCLIGDESSDSEFLMETDTSRMLLDFQN 69

Query: 63  FQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQRV-PC 111
            QT +TNN N+QSVP CGRP  RYDSC+G+KR I   E+CD   R  PC
Sbjct: 70  LQTPSTNNPNRQSVPECGRP-PRYDSCIGEKRSISNPENCDVRNRENPC 116

[Close]

BLAST of Spg018788 vs. ExPASy TrEMBL
Match: A0A0A0KVZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.4e-21
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 3   MAIAILVLLLNPTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQSIN 62
           MAI IL LL NPT  +  VN+T S+WC G  ENCLVGD + DSEFLM TE+S+ML    N
Sbjct: 10  MAILILTLLFNPTRCNTTVNETTSEWCYGS-ENCLVGDESLDSEFLMETETSRMLLDFQN 69

Query: 63  FQTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQRV-PC 111
            QT  T + N+QSV  CGRP  RYDSC G++R+IP  E+CD   R  PC
Sbjct: 70  LQTPGTIDPNRQSVAECGRP-PRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Spg018788 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-14
Identity = 54/108 (50.00%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 4   AIAILVLLLNPTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQSINF 63
           A+AI++LLLNPT SDA  +              L+GD + DSEFLM +  S++L  S NF
Sbjct: 11  AMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHISRILAGSQNF 70

Query: 64  QTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQR-VPC 111
           QTS TN+AN+ S   CGRP  RYDSCLG K   P  E+C TF R  PC
Sbjct: 71  QTSKTNDANKASGGGCGRP-PRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Spg018788 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 52/108 (48.15%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 4   AIAILVLLLNPTISDAAVNDTVSKWCDGGLENCLVGDLNSDSEFLMGTESSQMLQQSINF 63
           A+AI++LLLNPT SDA                 L+GD + DSEFLM +  S++L  S +F
Sbjct: 11  AMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHISRILAGSQDF 70

Query: 64  QTSNTNNANQQSVPACGRPSTRYDSCLGDKREIPKSEHCDTFQR-VPC 111
           QTS TN+AN+ S   C RP  RYDSCLG K   P  E+C TF R  PC
Sbjct: 71  QTSKTNDANKASGGGCERP-PRYDSCLGQKSNNPPPENCGTFNRNNPC 117

The following BLAST results are available for this feature:

BLAST of Spg018788 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011063.1	1.3e-27	63.06	hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607065.1	6.5e-27	62.16	hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN53798.1	1.9e-26	65.18	hypothetical protein Csa_014747 [Cucumis sativus]	[more]
KAA0042447.1	4.1e-21	55.96	hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK0350...	[more]
KAE8649335.1	3.5e-20	57.14	hypothetical protein Csa_014907 [Cucumis sativus]	[more]

BLAST of Spg018788 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg018788 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW62	9.2e-27	65.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]
A0A5D3BZL1	2.0e-21	55.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KVZ2	4.4e-21	56.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
A0A6J1G927	3.1e-14	50.00	uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1KBP5	1.7e-12	48.15	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]

BLAST of Spg018788 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018788.1	Spg018788.1	mRNA