Spg018745 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018745
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Locationscaffold3: 4445621 .. 4452302 (-)
RNA-Seq ExpressionSpg018745
SyntenySpg018745
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACAAAAGCAGAAGAGAAAGATAAAAAGTTCGAGAAAACCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTTTCTCGACATCTAGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGACGATCATGTGGACATCCCTAAGATAGTCGCATGTCATGTTGTCAATGCCTTCGAAGAAGGCGATTCTTCCTCAAGTCCACCTCAGGTGATGACCAAGCCAAAAGATTCACCTTCATTCACAATAGATGATTTGTTGTCACTTCCTCAAGCAACCAAAGATGCTATTGTTGAAACATTGAAAAGTTCTAACGTTTCAGATGTCCCAGACTTGCAAGAACACAGATGTGCCTCATGTTATTGATAGCGAGCATAGCTAGCTATCTTTACTTATTTAAATTAGCTAGTCTTTGATGATTTTTGGGCCATTTTATTGTGCTTTATTGTTTATTTTGTAGGAAAGCGATGATTAGAGCTAAAACGTGGAATTGGAGTTAATCGGGTGTTCGGGACGTGAAAATATGCCAAAGAACCGGAAAGTTCAAGCAACAAGGAGCCAAAAGAGGGCATTCTGCCCATCAGCGTCGAGACGCCACTCTTGGAGGGTCTCGACGCTGGTTTTCCTTAATTAGAAGAGGCGGCAGCGTCACAGCGTCGAGACGCTGTGACAATAGCGTCTCGACGCTACCGTTATTTCCATTCCAGACACACGTGTTTTAGAGGCAGCGTCGAGACGCTGTTTGGATAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGTTCTTTTCGGCTAGGTTTTTGAGGGGAACCAATTTTGGGACTTCTTAGAGCCGTAAACAGAGGAAAAACAGAGGAATTCAAGGCTGAAGCAAAGGGGAAAATTCGGAAATCAACCCATTGTTCGTGGGGATCGTGACGGGGACGTTCGGTCTCGGCCTACAACGAGTTTAATTCTTCTTTCCCTCACTTTAGTTAGATTTTTATGGATTTTACATGTTTAGTTGAGCTTGTAATACAAATCATGAGTAGCTAAACTTGTAGCTTAGGGATTGATGTAGTTGATTGTGTTTATGGATTGATTTATGGTTTAAGTTGTGCAATGTTTATTATGTTTGTAATCTTGATTTAATGCTTTCAATTAATTGGCCATTAGTTGGATGATTTATGTTTTGAATCTAGCTTGGGAGAGAGGATTTGATATAGACGTACTCAAGATTGAATGACTAAAGTTTATTTTCTAATTCGTGACGGTTTTAGATTAACTTTAGAATTGGTCAAAAGATCTCATTGCCTTGCATGTTAACCAACTTAGATAGGGATATCAAGTAGATTAATTTGCATGAGAATCAATTATACTCGGGAGAGGTAGTTGTGATAAAAGGGTCTTAGGCTCATAATTTCATTGTGCATAATAACTTAATCCTTAAAATCAATCCTAGACTAAATCGGCGAAATCAATTCCCTAAGTGTTTGTCCCAATTGAATTTCCACACTTTTTACTTGCTTTGATTTGGCTTTCTTATCATTCATTCATCACTTTTTGATCCCTAAATAAAATTGGGCAAGATAATTCACAATACTTGATTTGCTTAAACATCCAATCCAGAGGACGACACTCGTTTGTACGAACACTTTATTATTACTTGACCCGTGCGCTTGCGGTTAGGAAAAGTCCACATCAGTTATATGTCCATTAGCTTCACAGATGAAGACTTGATGTTGGGATTGAAGCCTCATAATAGGCCCTTATTCGTCTCAGGATATATTCGAGAGCAAAAAGTTAGTCGAATTCTTATCGATGATGGATCTGCAGTGAATATAATGCCTAAGTCAACCATGACACAGATAGGAATTTCAATGGATGAACTATCAAACAGTAGGTTGGTTATTCAAGGCTTCAACCAAGGCGGCCAACGAGCAATCGGCATGATCCGTTTGGAGCTTGTTATTGGAGATTTGAAGGCGAACACTTTATTCCATATCATAGATTCCAAGACCACTTACAAGTTATTGTTAGGCCGTCCTTGGATTCATGGAAGTGGAGTAATATCTTCTACACTTCATCAGTGTTTCAAGTTCTATCAAGACGGTGTCAAGAAAGTTGAAGCCGACACTAATCCATTCTGAGAGGCAGAATCCCACTTTGCAGATGCGAAATTTTATCTGCAAAATGATAAAGCAGGAGAGATTGTACCAACCGAAATTCCTCTGATTGAAAATCATAAAATAGAGCGTCAAAAGAATGTGAAGAAAGAGTCGATCGAAGAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAACATCCGCTCACCCTGCAAAATCGAAAGCTCGAAAGGAAGAGGCGCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCGCAAGAAAGGGGAATCACCATTCACAGAATGTTCAGAAATTTTGAAGGTTGGTGATGTGAAGATTCTAAAAGAAAATTTCACCATACCTCTGACAACAATTACCAAGCAAGAGATTCAGGGATCAAAGACTGATCGTACCAAAGTGACTTTGCCGGAAAGACGAACGAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAAAAAAGGCAGGATACGACTTTACAACTCATACTGAGCTTTCTCCGACACAGAAGAAGCTCCAAAAAGAAGGTTATGTCATACCATCCTCAAGAGCCGGACTAGGGTACAATCCCCCAGAGCCAGTTTGTATAACCAGAAAATGGAAGGTTGCAGATGCACATCACATAACGATAGAAGAGATGAGTGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTCTGTCTTTGATCTCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGGAAAAGGAAGGCCAGGGAAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTCTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCTTTGAGATCCGTGTTTGACCGCCTTCAAGCAACAAATGACCAATGCAAAGGAAAGTTGAAAAGTCTCGAAACACAAGAATCCGATGAAATGAATGACAACAATGGTTTTTCCAGTACTGTTCCTTCGCGGATGAAGAGGAAGCCTTTCGTTCTCATAAATACGGAAGGTGCTTTAAAAGTAAAGCGACAGTTAGTCATTCTAACTAACCCTTCGAAGGTGAACCAAGAGCTCGAAGAAGAACAAGCCAATTGTTGCCATATTTCTTTCGAAGAAATGCTAGATACTGAAATTTCTGAAGAAGCACCGGCATCGTTAGAGGATGGCAGCCAATCAACAATTGATGAGCTCAAAGAGGTAAACCTGGGTACGACAGAAGAACCACGCCCAACATTCATCAGTGCGTCACTTAGTGCTGAAGAGGAACGTGAATACCTGAATTTGCTCGTTACATATAAAGATGTCTTCGCTTGGTCGTACAAAGAGATGCCAAGACTCGATCCAAAGATAGCAGTCCACCATCTGGCGATTAAACAAGGATATCGACCTATTAAGCAAGCCCAAAGACGTTTCCGACCGGAGCTCGTTCCTCAAATTGAAATTGAAGTCAACAAGTTGATAGAAGTAGGGTTCATTCGGGAAGTGAAATATCCAACATGGATAGCAAACATTGTGCCAGTCAAAAAGAAGAATGGACAACTTCGGGTATGTGTGGACTTCCATGACTTGAATAATGCATGTCCCAAAGATGATTTTCCATTGCCTATCACTGAAGTTATGGTCGATGCCACTACAAGACATGAAGCCTTATCTTTCATGGATGCATCGTCAGGGTATAATCAAATTCGAACGACCCTTGAAGATGAAGAGATGACAACATTTCGAACTCGAAAAGGAATATACTGTTACAAGGTGATGCCTTTTGGATTAAAGAACGTCGGGGCAACTTACCAACGAGCCATGAAGAAGATCTTCGATGATATGCTCCATAAACTTGTTGAGTGCTATGTTGATGATCTCGTGGTCAAATCCAAGAAACGAGGAGACCACTTGCAAGATTTGAAGATAGTTTTTGACCGTTTGAGAAAGTACCAATTGAAAATGAATCCTCTTAAATGTGCAATTGGTGTGACATCGGGAAAGTTTCTTGGCTTCGTAGTAAGGCATCGGGGAATTGAAATCGACCAATCAAAGATTGACGCCATTCAGAAAATGCCAGAACCTGATAGCGAGCATAACTAGCTATTTTTCTGTAATTAATTAAGCTAGTCTTTTACAATTATTTGGCCAAATTTATGCATTTATATGTTTTATTTGTAGGAAATATGTGTTTGAAGCTAAAGTGAGCAATTGGAGTCAAATGGAGTTTTCAATCTAAAAAAAAAAAAAAAAAATCATAGCGTCGCGACGATCTCAGCGAATTTTCCAAATCCGCAGTATCGCGACAGCGTCGCGACGCTGTCTATGTCGTCTCGACGCTGTCGGCAGATTTTCTATAAATTAATCATTTTGTGCTACGGATTGGGGGAGTCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTCCGTGGGAGCTAATAGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGTGCGGTGTCGGCGGATTCGAGTTTTCCTTTCTCTTTCCCTTAATTCTTGTAGTTTTTATGGCTTTTCTTGCAATTAGTGTTTGTGGTTTAAAGACTATGAATTGCTAGTTGTTTGTCTTAGGGATTGATGTAGTTGTTTTAGCTTGTTGGATTGATTTGTGGTATGAATATGCATTTATTTTACCTATGTAATTATGGTTAAATGCTTTCAATTACTTGATCACTAGTTGAATGATTTGAGTGTTGAATCTTGCTCGAGAGAGGGGATTTGGCCTAAGACTTACTTTATTTAATTGCATGACTAAAGTAGAAATTCTAAGTTTGTGACGGGATTTGGAATAACTTTAGAAGTTGCTTGAAGAACTAAACTCAAATCCTTGCATGTTAATGAACTTAGATAGGGATATCAAGTTGGTTGCATGCATGGGAATCAATTATGCTCGGGAGAGATAGTTTTGATAAAAGGTTCCTAGACTTGGTTGAATAATTGCATGCTAAATTCATCCCATTAATTTATCCTCAATCTCAACAATGAAATCAATTCTCTAAGAGTCTTTCCATTTGAGTCTCCACCTTTATTTTATGCTTTTTGTCTTTAGATTTATCTTTTATCATTGAGTTTTGCTCCCTAAATAAAATTGGACAAGATTATTCACGGTACTTAATTTGCTAGAAAACCAATCCAGAGGACGACACTCGTTTTACACGAAAACACTATATTATTACTTGACCCGTACACTTGCGGTAAGCAAATTGCGCATCAAGTTTTTGGCGCCGTTGTCGGGGATTGGCATATTTAGTTAAATTAATATTGTGGAAAAATTGTTCGGTCTTAATTTAGGGTGTATTTTTATTTTGTAGATAGATTGCATTTCTTTTTCCTTATTTGTTTTCTTTCCATATTTGTTAGTTTCCTATTTTAGTTCTTTCCTTATTTGTTTGATTTTTTCCCTTATTTGTTTTTCCCTTATTTGCTTTTGTTTTTTTATTTATTTTTTTTCTTTCTTTCCTTTTTTGTTTGAGTCTTAGTCCTTTGTTCTTGTTGGGTTATTATTTGATTGGAAGCCTAATTATCATTGTTGCTTTAATTGAATGGCTTTTTATTCAACACCATATTCCAATTTTTCATCTTCAAGTTTTACCCCTTTAAAAGAAAATTCTTCCTTAGAAAGCATAATTCAAAATTATATTGAGGAGTCTAGAGCGAGGAGTCTAAAATTTGATGAAATTATAAAAGGACTTCAAACCCCAAAGGAAGTTAGTGAGGTGGGATCCACTTCCATAGGTTGTCTAGTGAGTCATGTGGCCGGTGATTCATTGGCACCCATTCATGAGCTTGATTCTTTCGATCTTGCTGAGGATGAGCATTTAGGGGTGAGTTGCATAGATAGTGGAGAAGAATTGGAGAGTTGTAGCACCTTTCAAGAACATGTTTGTGAGGAAGAAAAACAAAATGAGCTTGCAGTGACAGAGGAAGTTCAGGAGGTAGAGTTTGAGGTTGAAAAGCCTTCGTCTGTTTTATCTTTTCCATCCTTTATAAAATACGATTGTTCCTTTTTCTATTCTTACGAGTCAGTCTTAGAGTCAGAGTCTCTTTATTTTGATATTTCTCCTTTTATGCTTATTTTAATCAAAAATACCAAAAATAATTCTGCTTCAGGGGCCCATGAGAAGCTAGTAAGCTTGCCAGCGATCGTGAGTTTTATTGATTCAAGGAAGAAGGGCCCAAAGAAATACGATAATTTTTATGTGCCTTGACAGACTGGACGAGCACGTCGAGCTAAAGACGTTAAACAAGCGCTTATGGGAGGCAACCCAAGTAAGTTTAGTTGTGCTTGTCTTTTTGCTTTTGATTTATTGTTGGTTTTTGTTTTGTAGGTCTTGGTTCCAGTTTCTCCTTTGCTTGCAAGCTTCCATAAAAGAGGACATCGTCATTCCAGGGCAGTATTATTCACTCATCCTACTCTTTTATTGTTCTCATGATTGATTTTGCTTTATTTTCTTCATACATTTAGGACAATGCATGCTTTAAGTTTGGGGGTGGAATAG

mRNA sequence

ATGAGTGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTCTGTCTTTGATCTCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGGAAAAGGAAGGCCAGGGAAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTCTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCTTTGAGATCCGTGTTTGACCGCCTTCAAGCAACAAATGACCAATGCAAAGGAAAGTTGAAAAGTCTCGAAACACAAGAATCCGATGAAATGAATGACAACAATGGTTTTTCCAGTACTGTTCCTTCGCGGATGAAGAGGAAGCCTTTCGTTCTCATAAATACGGAAGGACTTCAAACCCCAAAGGAAGTTAGTGAGGTGGGATCCACTTCCATAGGTTGTCTAGTGAGTCATGTGGCCGGTGATTCATTGGCACCCATTCATGAGCTTGATTCTTTCGATCTTGCTGAGGATGAGCATTTAGGGGTGAGTTGCATAGATAGTGGAGAAGAATTGGAGAGTTGTAGCACCTTTCAAGAACATGTTTGTGAGGAAGAAAAACAAAATGAGCTTGCAGTGACAGAGGAAGTTCAGGAGGTAGAGTTTGAGGTTGAAAAGCCTTCGTCTGTTTTATCTTTTCCATCCTTTATAAAATACGATTGTTCCTTTTTCTATTCTTACGAGTCAGTCTTAGAGACAATGCATGCTTTAAGTTTGGGGGTGGAATAG

Coding sequence (CDS)

ATGAGTGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTCTGTCTTTGATCTCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGGAAAAGGAAGGCCAGGGAAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTCTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCTTTGAGATCCGTGTTTGACCGCCTTCAAGCAACAAATGACCAATGCAAAGGAAAGTTGAAAAGTCTCGAAACACAAGAATCCGATGAAATGAATGACAACAATGGTTTTTCCAGTACTGTTCCTTCGCGGATGAAGAGGAAGCCTTTCGTTCTCATAAATACGGAAGGACTTCAAACCCCAAAGGAAGTTAGTGAGGTGGGATCCACTTCCATAGGTTGTCTAGTGAGTCATGTGGCCGGTGATTCATTGGCACCCATTCATGAGCTTGATTCTTTCGATCTTGCTGAGGATGAGCATTTAGGGGTGAGTTGCATAGATAGTGGAGAAGAATTGGAGAGTTGTAGCACCTTTCAAGAACATGTTTGTGAGGAAGAAAAACAAAATGAGCTTGCAGTGACAGAGGAAGTTCAGGAGGTAGAGTTTGAGGTTGAAAAGCCTTCGTCTGTTTTATCTTTTCCATCCTTTATAAAATACGATTGTTCCTTTTTCTATTCTTACGAGTCAGTCTTAGAGACAATGCATGCTTTAAGTTTGGGGGTGGAATAG

Protein sequence

MSDPEDKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTEGLQTPKEVSEVGSTSIGCLVSHVAGDSLAPIHELDSFDLAEDEHLGVSCIDSGEELESCSTFQEHVCEEEKQNELAVTEEVQEVEFEVEKPSSVLSFPSFIKYDCSFFYSYESVLETMHALSLGVE
Homology
[Close]
BLAST of Spg018745 vs. NCBI nr
Match: TYK00108.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-19
Identity = 66/126 (52.38%), Postives = 82/126 (65.08%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           D  N+  Q+ SVFD IK  TTR SV QRL  ++ E++ Q  TS  TR S F RLS+STSK
Sbjct: 123 DNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTCTRTSAFKRLSISTSK 182

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K D P  S FDR++  NDQ + ++KSL+ +   E ND++   S VPSRMKRK FV INTE
Sbjct: 183 K-DRPSTSAFDRVKMINDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLFVDINTE 242

Query: 126 GLQTPK 132
           G  T K
Sbjct: 243 GSLTVK 247

[Close]
BLAST of Spg018745 vs. NCBI nr
Match: KAA0025376.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-18
Identity = 65/126 (51.59%), Postives = 82/126 (65.08%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           +  N+ +Q+ SVFD IK  TTR SV QRL  ++ E+E Q  T   TR S F RLS+STSK
Sbjct: 334 NNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSISTSK 393

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K D P  S FDRL+ TNDQ + ++KS + +   E ND++   S VPSRMK+K FV INTE
Sbjct: 394 K-DRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKKKLFVDINTE 453

Query: 126 GLQTPK 132
           G  T K
Sbjct: 454 GSLTVK 458

[Close]
BLAST of Spg018745 vs. NCBI nr
Match: KAA0061611.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-18
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           +  N+ +Q+ SVFD IK  TTR SV QRL  ++ E+E Q  T   TR S F RLS+STSK
Sbjct: 305 NNSNEINQRTSVFDRIKPSTTRSSVFQRLSMTTKEEENQCPTFIYTRTSTFKRLSISTSK 364

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K D P  SVFDRL+ T+DQ + ++KSL+ +   E ND++   S VPSRMKRK  V INTE
Sbjct: 365 K-DRPSTSVFDRLKMTDDQKQREMKSLKAKPFCEENDDDKIHSCVPSRMKRKLSVDINTE 424

Query: 126 GLQTP 131
           G  +P
Sbjct: 425 GAVSP 428

[Close]
BLAST of Spg018745 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-18
Identity = 66/126 (52.38%), Postives = 80/126 (63.49%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           D  N+  Q+ SVFD IK  TTR SV QRL  ++ E+E Q  TS   R S F RLS+STSK
Sbjct: 123 DNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSK 182

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K   P  S FDRL+ TNDQ + ++KSL+ +   E ND++   S VPSRMKRK  V INTE
Sbjct: 183 K-HRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTE 242

Query: 126 GLQTPK 132
           G  T K
Sbjct: 243 GSLTVK 247

[Close]
BLAST of Spg018745 vs. NCBI nr
Match: KAA0046209.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-18
Identity = 66/126 (52.38%), Postives = 81/126 (64.29%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           +  N+ +Q+ SVFD IK  TTR SV QRL  +  E+E Q  T   TR S F RLS+STSK
Sbjct: 64  NNSNEINQRTSVFDRIKPSTTRSSVFQRLSMAMKEEENQCPTFIYTRTSTFKRLSISTSK 123

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K D P  S FDRL+ TNDQ + ++KS + +   E ND++   S VPSRMKRK FV INTE
Sbjct: 124 K-DRPSTSSFDRLKMTNDQRQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTE 183

Query: 126 GLQTPK 132
           G  T K
Sbjct: 184 GSLTVK 188

[Close]
BLAST of Spg018745 vs. ExPASy TrEMBL
Match: A0A5D3BLW3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00640 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 66/126 (52.38%), Postives = 82/126 (65.08%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           D  N+  Q+ SVFD IK  TTR SV QRL  ++ E++ Q  TS  TR S F RLS+STSK
Sbjct: 123 DNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTCTRTSAFKRLSISTSK 182

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K D P  S FDR++  NDQ + ++KSL+ +   E ND++   S VPSRMKRK FV INTE
Sbjct: 183 K-DRPSTSAFDRVKMINDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLFVDINTE 242

Query: 126 GLQTPK 132
           G  T K
Sbjct: 243 GSLTVK 247

[Close]
BLAST of Spg018745 vs. ExPASy TrEMBL
Match: A0A5A7V7A0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001760 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.5e-19
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           +  N+ +Q+ SVFD IK  TTR SV QRL  ++ E+E Q  T   TR S F RLS+STSK
Sbjct: 305 NNSNEINQRTSVFDRIKPSTTRSSVFQRLSMTTKEEENQCPTFIYTRTSTFKRLSISTSK 364

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K D P  SVFDRL+ T+DQ + ++KSL+ +   E ND++   S VPSRMKRK  V INTE
Sbjct: 365 K-DRPSTSVFDRLKMTDDQKQREMKSLKAKPFCEENDDDKIHSCVPSRMKRKLSVDINTE 424

Query: 126 GLQTP 131
           G  +P
Sbjct: 425 GAVSP 428

[Close]
BLAST of Spg018745 vs. ExPASy TrEMBL
Match: A0A5A7SHQ6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00030 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.5e-19
Identity = 65/126 (51.59%), Postives = 82/126 (65.08%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           +  N+ +Q+ SVFD IK  TTR SV QRL  ++ E+E Q  T   TR S F RLS+STSK
Sbjct: 334 NNSNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSISTSK 393

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K D P  S FDRL+ TNDQ + ++KS + +   E ND++   S VPSRMK+K FV INTE
Sbjct: 394 K-DRPSTSAFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKKKLFVDINTE 453

Query: 126 GLQTPK 132
           G  T K
Sbjct: 454 GSLTVK 458

[Close]
BLAST of Spg018745 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.2e-19
Identity = 66/126 (52.38%), Postives = 80/126 (63.49%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           D  N+  Q+ SVFD IK  TTR SV QRL  ++ E+E Q  TS   R S F RLS+STSK
Sbjct: 123 DNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSK 182

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K   P  S FDRL+ TNDQ + ++KSL+ +   E ND++   S VPSRMKRK  V INTE
Sbjct: 183 K-HRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTE 242

Query: 126 GLQTPK 132
           G  T K
Sbjct: 243 GSLTVK 247

[Close]
BLAST of Spg018745 vs. ExPASy TrEMBL
Match: A0A5A7TY80 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8039G00020 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.2e-19
Identity = 66/126 (52.38%), Postives = 81/126 (64.29%), Query Frame = 0 

Query: 6   DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSK 65
           +  N+ +Q+ SVFD IK  TTR SV QRL  +  E+E Q  T   TR S F RLS+STSK
Sbjct: 64  NNSNEINQRTSVFDRIKPSTTRSSVFQRLSMAMKEEENQCPTFIYTRTSTFKRLSISTSK 123

Query: 66  KVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTVPSRMKRKPFVLINTE 125
           K D P  S FDRL+ TNDQ + ++KS + +   E ND++   S VPSRMKRK FV INTE
Sbjct: 124 K-DRPSTSSFDRLKMTNDQRQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTE 183

Query: 126 GLQTPK 132
           G  T K
Sbjct: 184 GSLTVK 188

The following BLAST results are available for this feature:
BLAST of Spg018745 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK00108.12.3e-1952.38retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0025376.11.1e-1851.59retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0061611.11.1e-1852.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0044978.11.5e-1852.38retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0046209.11.5e-1852.38gag protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of Spg018745 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018745 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BLW31.1e-1952.38Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V7A05.5e-1952.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7SHQ65.5e-1951.59Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7TQ067.2e-1952.38Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7TY807.2e-1952.38Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
BLAST of Spg018745 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018745.1Spg018745.1mRNA