Spg018720 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018720
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold3: 14745112 .. 14756470 (+)
RNA-Seq ExpressionSpg018720
SyntenySpg018720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGATGATAGTAGAGAAGCACGAATTTTGAATAGCTGTGTTCGGGGGATTTCTGGACAAATCTCTTGGGGATCTCATTTTCATTCCTTCAAGTACGTTGTAGAGGGTTCCAAAATGAAGAGTTTGATGTAAAGTACATTAATTTTGGTAAAGTATTGAGGAAGTTATGAGTGTTTGAACTTAGGGTATTGAATCTGGAAAAAGTGTGGAATGTGCTTTTATTTCTATAGTTTAGAATTCGTGAGCATAGAAAGAAAAGGCTATTATAGTTATGATGCTCGGTTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAAGGAACTAGCCAAGGCTGTGAGTGACAAAACAAATTTCGAAAATGATTTCTAAACTGTTATTTATGCTTAAATGTTTTACATGCTTGAATTTGAACTTATGAATAATACATTATTTCAATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTGATGAGATTTATATATGAGCACGTGATTATTGACTTTCTAAAAAGGAGTTGAAACGATATCATTTTAAGCAAAGTATGTATTAGCGAGTATTGTTTAAAGATTTTTAGTTTCCCACGAGAAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAAAGATAAGCAGGCATATTTTAATGTTTTCATGTGATTTTCTAAGACTTCCATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAAAGACGATGGAAGTGTTGGGCGAGCCCAACTACATTGTATAGCAAACGATGGTTGTACTGGGCATGCCCTACACAACTTAGATTAGTCATGCTAGTTAAAATGTGTAATAAACTTGATACGCCTTGCTAGATTTTAATGACATACCTGCTGAGTATTTGAGAAACCTGTTATCATTACACATTTATATTTCACGCTTTGATTAAACAAATTTATATGTTTATGGTTTATCATGTGTTATGATTTATCGATTAACAGTTTTAAATTTAGTCATTCACTCGGCTTCATATCTCACTCTTTCAAAATGTTTTCCCACTTTCCAGGTAGAGATCGAGCTCCCGATGCCTGATAAACTGGCAAAGTATGCTAAAAGCTCCCAGATCAAGTTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTGTTTGTATTGTAAATGTCTTTGTAAGGATTGGATAGTTTACGGTTTGTGTAAGCTCTAGATGTTGTGGTTGTGTAAACCCTAGTTGGATATGCTTTTGGTTGTGATATCTCTATCAGGTTTATTTTCCAAACTGAGTTAAGTCAGGGTTGTACGTCATGTATGTCTAAAGGTTTTCAAGGTTCCACTGTGTTGTGTTGCATTTAAGTATTCCATAACTAAGATTAGCATGTTTATCAGGTTCAACGGTTCAACAGGGTCAACAGGTATCGTTAGAGAAGGACGATGTCTGTTGGCTTCACGCCATCTCCTGGACTAAGCTAGCAGGTAGTTCGAGAGGGGGTGTGACAACTTGGTATCAGAGGAGTTAGCTCTATGGGAAATGAGACAGAGCAGTTAGGGCTAAGAAGAAACTAGGAAGTAAATAGTTAGATGTCGAGTTTGTTCAGATAGAACTAGTAGAGTATGGTCCAAGAAGGGATAAGAGTAAGTCCAGTCAGGACTAGAATGTAGGTAGAAGTTTAGTATCATGCATCTGAGTTAAGTATCTACAGCATGTCTGATGTATGGATATGTTATAGGAGTCATGCCACCACGTACCAACAGATGACGCAGGTAGAATCAGGACGGGACGCAGGATCCTACCCAAGGTCAATCTGAAAGGGGATCCAGTACCTCGAGAGTTCAGACTGGGGCAGAAAACGAGCAGTTTGCTAGATCTGCTCAGGAGGTAGGTAGGCTAGAGAGAGCAAGGCCTAGTGATCCGAAAAAAGATGTACGGAATAGAATGACTGAAGAAATTAGGAGCCACAGTGTTTTAGGGTTCCATAGATCTGACTGACGCCGACGTTTGGTTAAATATGCTTGAGAAATGCTTTGACGTGATGAGTTGTCCTTAGGAACGGAAAGTCAGATTGGCCACATTCATGCTGCAAAATGAGGCAGAAGGATGGTGGAAATCCATATTAGCCAGGTGCAGTGATGCACATACGTTAGACTGAAAGACTTTCTAGGGTTGAAGCAAGGGCCACTTTCAGTGGCCGAGTATGAGAGAAAGTATTCCGAGCTTTCACGCTATGCTGATGTGATTGTGGCATATGAGAGTGACAGGTGTCGAAGGTTTGAAAGAGGGTTGCGTTTTGAGATACGTACCCCGGTTATAGCTATTGCTAAGTGGACGGATTTTTCTCAGTTAGTAGAGGCTGCCCTACGTGTGGAGCAGAGTATAATTGAGGAGAAGTTAGCAGTGGAGCCTAGTTGTGGGGCTTCAACAGCTAGTGGTTTGCGAGGTCGTGAGCAGCGGAGGTTCACACCTAAAGTGAATGTTTCAGGCCGTCAAGACTTTAAGCATCGGTCTGGTGGCCAATCATCGAGGCAGATGAGTTCAGGTAGTGTCTATCAGAGGCGGAGCCAGAGAACACCCAATCAGTCTGCTAGTTCAGCAGCAAGACGCAGACGGGTCAGGAGTCCGTTGCTAGTGAAACCAGACAAACCCCATGTGCGAGTTGTGGCAGGAATCATCGGGGTCAGTGTCTTGTTGGTGCCGGTGTGTGTTACCAGTGTGGACAACTAGGGTATTTCAAGAGAGATTGTCCACAGCTGAGAGTAGAAGTTCAGAGGGACCAGGGAGTTGAGTCCCACACAGTTGAGTAGCCGAGAGTCTCAACAGCTGCAGGAGAGGGCACCAGCGGTGCAAGATAGAAGAAGTTGTGGGGAGACCTAGGCAGTAGGGAAAAGTCTACTCTATGACTCAACGGGAAGCGAAGGATGCACTAGACGTGATTACTGGTATGGTTTTTATTTGTAATGTACCTGCACGTGTTTTATTAGATCCAGGTGCTACGCATTCCTTTGTTTCTAGTATGTTTGTAACTAAGTTGAATAGGATGCTAGAGCCTTTATCTGAGGGGTTAGTTATATACACTCCAGTTGGTGGCGTTTTACTAGTCAATGAAGTGTTGCGTGATTGTGAGGTGTTAGTAGAAGGTCACAGTATGTTAGTGGATCTTCTTCCACTAGAGTTGTAGGTGTTGGATGTAATCTTGGGAATGGATTTCTTATTCACTAACAATGCTTCTATGGATTGCCATAGGAAGGAAGTGATTTTCAGGAAACCATATTTGGCTGAAGTGGTTTTCAGGGGTGAAAGGAAGATTATTCCTACGAGTCTGATTTCAGCTCTGAAAGCTGAGAAGTTGCTGAGAAAGGGTTGCACAACATTTATTGCACACATAGTAGAGGTGCAAGAAGAGAAGCTGAAACCAGAAGATGTGTCCTATAGTGAACGAATTTCTTGATGTTTTTCTAGGTGATCCTTCAGGTTTGCCACCTGATAGGGAGGTGGAGTTCACTATTGAATTGTTACCAGGAACCACACCTATTTCCTAGGCGCCATATAGAATGGCTCCGAGCGAGCTTAAGGAGCTGAAGGTGCAGTTACAAAAACTAGTTGACAAGGGATACATCATGCCTAGTGTATCGCCTTGGGGAGCTCCAGTGTTATTCGTGAAGAAGAAAGAAGGTACCCTTAGATTATGCATTGATTACAGGCAGTTAAACAAGGTCACGATACCTAACACGTATCCTCTACCACACATCGATGACTTCTTTGACCAGATAAGGGGAGCAATAGTGTTTTCTTTGATTGATTTGAGGTTAGGATACCATCATTTAAAGCTTAGGGAATCAGATATTCCTAAGACAACATTCAGGACGAGGTATGGGCACTATGATTTTTTAGTAATGCCATTCGGTTTAACGAATGAGCCAGCTCTTTTCATGGACCTCATGAATAGGATTTTCCATCAGTATTTAGATCAGTTTGTGATAGTGTTCATCGATGACATACTAGTTTACTCAATTGATAGGAAAACCCATGAGAAACATCTGAGGATCGTTATACAGACACTACGTGATAAACAATTGTACGCTAAGTTAAGTAAATGTGAGTTCTGGTTGAAACAGGTAGTGTTCTTAGCGCATGTAGTTTCGGTGGATGGAGTTAGTGCTGATCCGCAGAAAGTGGAAGCTGTTGTCAACTGGGAGAGACCAGCTAGTGCAACAGAGGTACGTAGTTTCCTAGGCCTGGCAGGATACTACAGACGTTTTGTTGACGATTTCTCACGATTAGCATTACCCTTGACAGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCGGATAAATGCGAACAGAGTTTCCAGGAGCTGAAAAAGAGATTAGTGACAACACCTATTCTGACACTTCCTGTAACAAGGAAGGAGTATGTGATCTATTGTGACGCTTCGAGGCAAGGATTAGGTTGTGTGATTATGAAGGAAGGAAAGGTAATAGCTTATGCTTCAAGGCAGTTGAAGAAGCATGAGTGTAACTACCCTACCCATGATCTTGAGTTAACAACAGTTGTTTTAGCATTGAAGATCTGGAGACATTATTTATTCGGTGAGAAGTGCCACATTTTCACAGATCATAAGAATCTGAAGTATATCTTTGATCAGAAAGAGCTGAATCTGAGACAGAGGCGATGGCTAGAACTGATTAAAGACTATGACTGTACCATAGAATACCATCCGGGTAAGGCTAACGTAGTAGCAGATGAATTAAGTAGGAAGTCGAGGCTTCCGAAGAGTGCCTTGTGTGGTATTCGAGCAACCTTGCTAAGTGAGTTAAGAGGTTTCAAGGCGGTTGTGACTGCAGAGAGTTCAGGGAGTCTTTTAGCTCAATTTCAAGTTATGTCTTCTCTAGTGGCAGAGATTGTGAGAAGAAAGCGAGGGGATAGTAACTTACAGAAGATGCTTGAAAAGTCCAAGCAAGGCCCAGAGGATAGTAACTTATAGAAGATGCTTGAAAAGTCCAAGCAAGGCCCAGAGGTAGAATTTGAGTTGAGGGCAGACAGAGCCATAGTTAAGAGTGTTGTACTAGAGGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGGAAGCACCAAGATGTACAAAACTTTGAAGAAGACTTATTGGTGGCCTGATATGAAGCGGGAGATAGTCGAATATGTTGATAAATGTTTGATCTGCCAACAGGTTAAACCAGTGAAACATAAGCCATGAGGACTCCTAAATCCACTGCCAGTGCCGGAGTGGAAGTGGGAGCAGTGGGAGCATATCACTATGGATTTTCTGTTTGGATTACTTTGTACTTCAAGTGGACATGATGGTATATGGGTAATAGTACACAGACTCACCAAGACAGCACGATTTATACCAATTGAAGCGACGTCTACACTAGATCAGCTAGCTAAGTTATACATCGACAGGATTGTGAGTCAACATGGAGTGCCAATGTCCATAGTTTCAGATAGGGATCGAGGTTTACTTCTATGTTTTGGCCTAGTGTGCAGAAAGCAATGGGAACAAAGTTGAAGTTCAGTACAACATTCCATCCCCAGAGAGATGGTCAGTCAGAGAGGACCATCCAGACCTTATAGGACATGTTGAGAGCATGTGTCCTTCAGTTTAAGGGAAGTTGGAATACCCACTTATCACTTATGGAGTTCGCTTATAATAATAACTATCAGTCTAGTATCGGCATGGCACCATTTGAGGCTTTGTATGGCGGACCATCAAAACTGTTGTGTGCTAGAACTAAGTGGGAGAGTGAGAGTTAGTTGGTCCTGAGTTACTACAAGTTACGATAGACAGTATTAAGCTAATTAGAGAGAACCTGAAAATAGCTCAAGATCGACAGAAGAGCTATGTAGATAAGCGATGAAGAGACTTAGAATTCCATGTTGGAGATCAACTTTTCTTGAAGTTATCTCCGCGGAGAGGTTTTCTTCGCTTTGGGAGGAAAGGTAAGCTTAGTCCTAGATATATTGGTCCTTACCAGGTAACAGAACGAGTTGGCCAGTAGCCTATAGACTTGAGTTGCCAGCAGAACTTGCTCGAATACATGATGTTTTTCATGTGTCCATGTTGAAGAAATATATTCCAGATCCGTCACATGAGTTGCAAGTGCAACTGGTTGAGCTGAAAGAAGACTTGAGTTATGAAGATGAAGCGGTTCAAATCCTCGACAGAAAGTAGCAAGTTTTAAGAAACAAGACGATCCCACTCGTGAAGGTTCTTTGGAGACATCACGGAGTGGAGGAGGCAACCTGGGAGTCAGAAGACCAGATGAGGAGGAGTTACCCGACACTCTTCACCTAAGGAGTTCTAAATTTCGAGGACGAAATTTCATAAGGGGGAGGTAAGTTGTAAACCCGAGACCTTCCTTGAATTATTTTCTATTGTCACATATTGTAGGAAGTTGGATTAAAGTTGTTGTTGTTTCATTGTTGAAGAAAAATGGCAAAGCTTTTGGTTCAAGATGTTTTTGATAATTTTGGAGTTTATTTAAAGAAAAAAAAAATGAAAGGAAACAAAGAAAATGAAAGGAAAAGAGAAGAAAATAGGAAAAGGAAGAATAAAAAAAAAATGAAATGAAAAAAAAAAACTTTCAGTGCTTAATGGTATAAAGAGAAAATCCACCACCGCCTAAGGTTTTTCAAACCCACTTTCTTTTTCATTTCCCATTCACTGCCTCAGTCAATTTTCTTCATCATTTCCCATCAAATTTCAGAACATTTAGAGAGAGAGAGTGAAGGAAGAAGAAGAGGGAGCACACTGGAGGTTTGAGGTTGAAGAAAAGAGGGGAAAGCTCATGCAAGTGCAACAATGGCAGAATCTTGGTTCAATCTGCCTATCTCTGGTTTCTAATTCGGTTTGAGTTACACACGATGAATTAAGAGGTGAGGTTTGACTTTCTTGAAAGTTAATTCATTTTCTAACAAATGTCATGAAGAAAGGTTGAGCTAATTCTAATGTTAAGTTAATGATTTTGGAAGAGGAAAACAGAGCACAAAATTTTCGTGCAAATCTTAAGGGTTTCTGGTTTTCTCTTGTTTTTCTAACCTTCCGGAGTGTACAAGTTGATTTAGAAGCTCAATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTATGACTTTCATCAAGCATTCATGAGCCAAAAAGGACTGCAAGTAGGTTTACGTTCAGGAGCAAAGTAGAGGGTAGCAGAGAAGCACAATTTTGAATAGCTGTGTTCGGGGGATTTCTGGACAAATCTGTTAGGATTCGCATTTTCATTCCTTCAAGTACGTTGTAGAGGGTTCCACAATGAAGAGTTTGATATAAAGCACATTAATGTCGGTCAAGTATTGAGGAAGTTATGAGTGTTTGAAATTAGGGTATTGAATCTGGAAAAAATGTGGAATGTGATTTTATTTCTAGAGTTTAGAATTCGTGAGCATAGAAAGACAACACTATTATAGTTTTGATGCTTGGTTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGCCAAGTCTACAGGCCAGGGAGCTAGCCAAGGCTGTGAGTGACAAAACAAATTTCGAAAATGATTTCTAAACTGTTATTTATGCTTAAATGTTTTACATACGTGAATTTGAACTTATGAATAATACATGATTTCAATGAATGGTTTCAAGCATAATTTTTGAACTTAGATTTTCTAATGAGATTTATATATGAGCACGTGATTATTGACTTTCTGAAAAGTAGTTCAAAACGATATCATTTTAAGCAAAGTATGTATTAGCGAGTATTGTTTAAAGATTTTCAGTTTCCCACGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAAAGATAAGCAGGCATGTTTTAATATTTATTCATGTGATCTTCTGAGACTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTTATATTTCGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGTGGGCCCCACTACGACAGAGACGATGGGAGTGCTGGGCGAGCCCCACTACATCGTAGAGCAAACGTTGGTTGTACTGGGCATGCCCTACACAACGTATATTAGTCATGCTAGTTAAAATGTTTAATATAATTGATATGCCTTGCTAGATTTTAATGACATAGCTGCTGAGTATTTGAAAAGCTGTTACCACTACCCGTTTATATTTAACGCTTTGATTAAACATATTTATATGTTTAAGGTTTATCATGTGTTATGATTTGCGGATTAACAGTTTTAAATTTAGTCACTCACTCGGCTTCATAGCTCACTCTTTCAAAATGTTTTCCCACATTCCAGGTAGAGATCGAGCTCCCAGTACCTGATAAACTGCCAGAGTCTGCTAAAATCTCCCAGATCAAGTTCCAATACGTGGGTGGAGTTGTACATTGAGTCTGTTTGTGTTGTAAATGTCTTTGTAAGGATTGGATAGTTTATGATTTGTGTAAGTTCTAGATGTTTTGGTTGTGTAAACCCTAGTTGGATATGTTTTTGGTTGTGATATCTCTATCAGGTTTATTTTCCAAACTGAGTTAAGTCAGGGCTGCGCGTCATGTATGTCTAAAGGTTTTCAAGGATCTGCTGTGTTGTGTTGCATGTAAAGTATTCCATAACTAAGATCAACATGTTTATCAGGTTCAACGGTTCAACAGGTATCGTTAGAGAAGGACGATGTCCGTTGGCTTCACGCCCTCTCCCGGACTAAGCTAGCAGTTAGTTTGGGGGGGGGGTGTGACATTACAAGCTACCAAGCACTCCAAAAAATGCCCAATATAAGAATTTTCACTCTCCTCACAACTCGACCGTCAAAGGTGGCTCAAAGAGCCTTAAAAGGACTAAGAAAAGGAATTGGATGATTGCTTGATGATGAAAATGAGGAGTGAGCCGCGTCTTTTATAGGCCTCAAAATGGGACAGCGTCGCGACGATGTGACGTACTCTGCTTGGGCGCCAAGACACCATAGCGTCGAGACGTTAAGGGAAAGCGTCGAGACACTATCCTTCGGCTAAAGCTTCCAGAATGCGTTTCAAGGCTGATTTTTGGGCTCCCCTCCATTATTTGGGCCAATTGTCTTCCATGATGGGTCTTGGACTTCTCCCACTTGAGTCACCTTGATCTCCATGGATTAATCTTCAATATTTTGGGCTTCTTTTATCCTCTTTTTCTCCAATTTTCTACCAAAACTCCTAAGGACCAAAATTAATCAATTAAATGAATTTATATAATAAAAACACAATAAAGCACATCAAAAGCTATTAAATTCAAGGCTAAAATAGCAATATTAATGCTTGCTATCAGATCCCACCGTCCATCGACTCACTAACTAGTTCCCAATTAATTAACTCCACGAACCCGTCAAAATTAATTAATTGAGTAACTGCATTAAGATCAAGATATCCCTAGAGCGCTAACCCAACGAACCTGTTGAACCAACATGCAATTCATTAATTAATTAACCCTGCAGTGATTAATAAACAATGAATTGGTGCTCTAAGCTAGAATGCTCTAATTAACTAGGAAAAGCCTAAATTAATTATGAACATCGATTTAGACCCTAGACATATGCCCATGAATCGGTCTATGTGCTAACTATGAAGTAACTACCCATTAGCTAATGTGGAAATCAATTAATTAGCATATTATTAACATACGAGTTGCGAGTTAGGGCGTCAATCTAACCTACTGTGCATCCTAATTATAAAAGCAGAAATCTAAAACCACAAACAATAATTAAAACATGCGTGAAGGACATTAGAACCCAAGAAGAATATTCATTCAGAACAGAAAACTCAATGAACCTCAAATGTACTTACAATACCGAGGTTCCAACTACAACAATCCCAGCTTAGACGACTGTAGACGAGCATAATCTCAGCCCCTAAGGCTTGATTAACCTACCTAAAATTGATTTAAACTTGGGAGAACTGAGAACTAGAGAGAAAAACGAGTAGAACGGCGAAAGAATCACTAAAACGGAGTTCGGATGACCAAGATATGAAAGAAACAAATTTATAGCGTAGTCGTAGCATCGAGACGCTAGGCAATTTGTCTTCCGTGCATTTTCGTGCTAGTGTCGAGACGTCGTGGCCGGCGTCTCGACGCTGACGGTGATTTGGGCTGTCCTCTATTTACGTAGCGTCAAGATGCCGCGAGGTAGCGTCTCGTTGCTACCTCTCTGGTCTCCCTTGTTTGGCTGCTTCAATTTTGCTTCTTTTGAGGTTGTTTTCGACTCTTGAGTGCTCTGCTTTGGTCCTTTCACCTTATTGACATCCCGTGGACTTCAAGATGGATCAAAACAACATTAATTTCCTCAAATTGACATCAATTTGAAATTTCAGCTCCCGAGAGGCTCTAACACCAAACATCTACAAAATAATACAATTAAGCATAATAATTAACATAAAACTAGCAAGATTAAGAACAAATGTGTAGGGCCAAATTAGTCCAATCAAATACCCCCAACCTAAACCTTGCTTGTCCTCGAGCAAGCATTCAATAGAAGTATAGGATTCAATGGTTGCAATTCTATAAACTCCAATCTCAATGTCTTAAATGCAAAATTATTGCAAATAAGAATCATGCACTCATTGCCCATTAAAGAGACAAATTAAAATTTTTCATGAAGTTTCTCGCTAAAGCTCACACTTAGCTTCCCTAGAATCAATTTTACAAGCCCGAGATTGGATTATACAACCCTCAACCTATCTTCCGTCTACACTGGCACTAGGAATTTACCAAGGAGCAAACAAAACAAATTAGATTGTTTTTCTCGTTACCTAGGTGCCTGAAAAATAAAAGACATTTTCTTTCTGCATTCTTTTAAGGCGAGACACTAGCTTTCACAGTACGATGTAGGTGTTGGGAGTGCGACCAAAGTCCCACATTGGCTAGATAAAGGGATGATCATGGGCTTATAAGGCAGGACAAGTATCTCCATTGGCATGAGGCCTTTTGGGGTAATCCAAAAGCAAAGCCATGAGGGTTTATGCCCAAAGTGGACAATATCATACCATTGTGGAGATATGTGGGTGTCTGTTGTCCCTTATAAGTGGTATCAGAGCCATGCCCCAAAGGTAGCCATGTCGGGTGGAATCCTTGGGGTGCCGAACAAAGATGTTGTGAGCCTTAATAGTCATGGTGAAGGTCCGTGGTTGTGCTCTGGGAAGGCGGGTATACTCTAA

mRNA sequence

ATGACTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGATGATAGTAGAGAAGCACGAATTTTGAATAGCTGTGTTCGGGGGATTTCTGGACAAATCTCTTGGGGATCTCATTTTCATTCCTTCAAGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAAGGAACTAGCCAAGGCTACTTCCATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATAAACTGGCAAAGTTTATTTTCCAAACTGAGTTAAGTCAGGGTTGTACGTCATGTTCAACGGTTCAACAGGGTCAACAGGTATCGTTAGAGAAGGACGATGTCTGTTGGCTTCACGCCATCTCCTGGACTAAGCTAGCAGGTAGTTCGAGAGGGGGTGTGACAACTTGGAGTCATGCCACCACGTACCAACAGATGACGCAGGTAGAATCAGGACGGGACGCAGGATCCTACCCAAGGCCAAGAGGAAATAGGCCAAGTCTACAGGCCAGGGAGCTAGCCAAGGCTGTAGAGATCGAGCTCCCAGTACCTGATAAACTGCCAGAGTCTGCTAAAATCTCCCAGATCAAGTTTATTTTCCAAACTGAGTTAAGTCAGGGCTGCGCGTCATGTTCAACGGTTCAACAGGTATCGTTAGAGAAGGACGATGTCCGTTGGCTTCACGCCCTCTCCCGGACTAAGCTAGCATGTCGAGACGTCGTGGCCGGCGTCTCGACGCTGACGGTGATTTGGGCTGTCCTCTATTTACGTAGCGTCAAGATGCCGCGAGGCAGGACAAGTATCTCCATTGGCATGAGGCCTTTTGGGGTAATCCAAAAGCAAAGCCATGAGGGTTTATGCCCAAAGTGGACAATATCATACCATTGTGGAGATATGTGGGTGTCTGTTGTCCCTTATAAGTGGTATCAGAGCCATGCCCCAAAGGTAGCCATGTCGGGTGGAATCCTTGGGGTGCCGAACAAAGATGTTGTGAGCCTTAATAGTCATGGTGAAGGTCCGTGGTTGTGCTCTGGGAAGGCGGGTATACTCTAA

Coding sequence (CDS)

ATGACTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGATGATAGTAGAGAAGCACGAATTTTGAATAGCTGTGTTCGGGGGATTTCTGGACAAATCTCTTGGGGATCTCATTTTCATTCCTTCAAGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAAGGAACTAGCCAAGGCTACTTCCATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATAAACTGGCAAAGTTTATTTTCCAAACTGAGTTAAGTCAGGGTTGTACGTCATGTTCAACGGTTCAACAGGGTCAACAGGTATCGTTAGAGAAGGACGATGTCTGTTGGCTTCACGCCATCTCCTGGACTAAGCTAGCAGGTAGTTCGAGAGGGGGTGTGACAACTTGGAGTCATGCCACCACGTACCAACAGATGACGCAGGTAGAATCAGGACGGGACGCAGGATCCTACCCAAGGCCAAGAGGAAATAGGCCAAGTCTACAGGCCAGGGAGCTAGCCAAGGCTGTAGAGATCGAGCTCCCAGTACCTGATAAACTGCCAGAGTCTGCTAAAATCTCCCAGATCAAGTTTATTTTCCAAACTGAGTTAAGTCAGGGCTGCGCGTCATGTTCAACGGTTCAACAGGTATCGTTAGAGAAGGACGATGTCCGTTGGCTTCACGCCCTCTCCCGGACTAAGCTAGCATGTCGAGACGTCGTGGCCGGCGTCTCGACGCTGACGGTGATTTGGGCTGTCCTCTATTTACGTAGCGTCAAGATGCCGCGAGGCAGGACAAGTATCTCCATTGGCATGAGGCCTTTTGGGGTAATCCAAAAGCAAAGCCATGAGGGTTTATGCCCAAAGTGGACAATATCATACCATTGTGGAGATATGTGGGTGTCTGTTGTCCCTTATAAGTGGTATCAGAGCCATGCCCCAAAGGTAGCCATGTCGGGTGGAATCCTTGGGGTGCCGAACAAAGATGTTGTGAGCCTTAATAGTCATGGTGAAGGTCCGTGGTTGTGCTCTGGGAAGGCGGGTATACTCTAA

Protein sequence

MTGSRFNFRRKVDDSREARILNSCVRGISGQISWGSHFHSFKPRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQIKFIFQTELSQGCASCSTVQQVSLEKDDVRWLHALSRTKLACRDVVAGVSTLTVIWAVLYLRSVKMPRGRTSISIGMRPFGVIQKQSHEGLCPKWTISYHCGDMWVSVVPYKWYQSHAPKVAMSGGILGVPNKDVVSLNSHGEGPWLCSGKAGIL
Homology
[Close]
BLAST of Spg018720 vs. NCBI nr
Match: KAA0066738.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK27886.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 8.9e-17
Identity = 60/132 (45.45%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 43  PRGNRPSLQAKELAKATSIDYMT-------EILSPRLYGTVCTQVEIELPMPDKLAKFIF 102
           PRGNRPSLQ  EL K       T       +++   +       VEIELP PD L    +
Sbjct: 34  PRGNRPSLQTGELDKTIIFPLSTLSILRDNDVIVYHMNMFPTFHVEIELPGPDTLPTLFY 93

Query: 103 QTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQ 162
           +   S    +     +G    +  DDVCWLHA+   K AG   GGVTTWSHATTYQQ TQ
Sbjct: 94  KP--SDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKPAGGLGGGVTTWSHATTYQQTTQ 153

Query: 163 VESGRDAGSYPR 168
            ES  DAGSYPR
Sbjct: 154 AESEWDAGSYPR 163

[Close]
BLAST of Spg018720 vs. NCBI nr
Match: KAA0025361.1 (uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa] >TYK23441.1 uncharacterized protein E5676_scaffold605G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-15
Identity = 62/133 (46.62%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 64  MTEILSPRLYGTVCTQ-----------------VEIELPMPDKLAKF---------IFQT 123
           MTEILS RLYGTVCTQ                 VEIELP+ D L  F          F  
Sbjct: 1   MTEILSLRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVLDTLLMFAESFGSNSSYFTN 60

Query: 124 ELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVE 171
           ++  G      V  G    +  DDVCWLHA+   K AG   G     SHATTYQQ TQ E
Sbjct: 61  QVMSGLHLVFNVSVGSTWIVRGDDVCWLHAVFRAKTAGGPGGE----SHATTYQQTTQAE 120

[Close]
BLAST of Spg018720 vs. NCBI nr
Match: TYK00845.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 5.4e-14
Identity = 54/110 (49.09%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 74  GTVCTQV-----------------EIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVS 133
           GTVCTQV                 EIELP+PD L+      E S   +  + + +G    
Sbjct: 42  GTVCTQVIFPLSTLSVLRDNDAVAEIELPVPDTLST---SAESSGSNSRSAGIVRG---- 101

Query: 134 LEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYP 167
              DDVCWLHAI   K+ G   GGVTTWSHATTYQQ TQ ESG DAGSYP
Sbjct: 102 ---DDVCWLHAIFRAKIVGGPGGGVTTWSHATTYQQTTQAESGWDAGSYP 141

[Close]
BLAST of Spg018720 vs. NCBI nr
Match: KAA0037251.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-13
Identity = 67/190 (35.26%), Postives = 87/190 (45.79%), Query Frame = 0 

Query: 43  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQG 102
           PRGNRPSLQ  EL K  ++ +    LS  L       VEIELP+ D L      +  S G
Sbjct: 218 PRGNRPSLQTGELDK--TVIFPLSTLSVFLDNDAV--VEIELPVSDALP----TSAESFG 277

Query: 103 CTSCSTVQ-----------------------------QGQQVSLEKDDVCWLHAISWTKL 162
             S + ++                             +G    +  DDVCWLHA+   K 
Sbjct: 278 SNSSTWLELYFVSVHVEMFVRLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFQAKT 337

Query: 163 AGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDK 204
            G  RGGVTTWSHATTY Q TQ E G DAGSYPR         A+E  +  +     P+K
Sbjct: 338 VGGPRGGVTTWSHATTYLQTTQAELGWDAGSYPR--------SAQENGRPEQARPSDPEK 391

[Close]
BLAST of Spg018720 vs. NCBI nr
Match: TYK07530.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-13
Identity = 67/190 (35.26%), Postives = 87/190 (45.79%), Query Frame = 0 

Query: 43  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQG 102
           PRGNRPSLQ  EL K  ++ +    LS  L       VEIELP+ D L      +  S G
Sbjct: 69  PRGNRPSLQTGELDK--TVIFPLSTLSVFLDNDAV--VEIELPVSDALP----TSAESFG 128

Query: 103 CTSCSTVQ-----------------------------QGQQVSLEKDDVCWLHAISWTKL 162
             S + ++                             +G    +  DDVCWLHA+   K 
Sbjct: 129 SNSSTWLELYFVSVHVEMFVRLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFQAKT 188

Query: 163 AGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDK 204
            G  RGGVTTWSHATTY Q TQ E G DAGSYPR         A+E  +  +     P+K
Sbjct: 189 VGGPRGGVTTWSHATTYLQTTQAELGWDAGSYPR--------SAQENGRPEQARPSDPEK 242

[Close]
BLAST of Spg018720 vs. ExPASy TrEMBL
Match: A0A5D3DVW9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00700 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-17
Identity = 60/132 (45.45%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 43  PRGNRPSLQAKELAKATSIDYMT-------EILSPRLYGTVCTQVEIELPMPDKLAKFIF 102
           PRGNRPSLQ  EL K       T       +++   +       VEIELP PD L    +
Sbjct: 34  PRGNRPSLQTGELDKTIIFPLSTLSILRDNDVIVYHMNMFPTFHVEIELPGPDTLPTLFY 93

Query: 103 QTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQ 162
           +   S    +     +G    +  DDVCWLHA+   K AG   GGVTTWSHATTYQQ TQ
Sbjct: 94  KP--SDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKPAGGLGGGVTTWSHATTYQQTTQ 153

Query: 163 VESGRDAGSYPR 168
            ES  DAGSYPR
Sbjct: 154 AESEWDAGSYPR 163

[Close]
BLAST of Spg018720 vs. ExPASy TrEMBL
Match: A0A5D3DIE3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00440 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 62/133 (46.62%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 64  MTEILSPRLYGTVCTQ-----------------VEIELPMPDKLAKF---------IFQT 123
           MTEILS RLYGTVCTQ                 VEIELP+ D L  F          F  
Sbjct: 1   MTEILSLRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVLDTLLMFAESFGSNSSYFTN 60

Query: 124 ELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVE 171
           ++  G      V  G    +  DDVCWLHA+   K AG   G     SHATTYQQ TQ E
Sbjct: 61  QVMSGLHLVFNVSVGSTWIVRGDDVCWLHAVFRAKTAGGPGGE----SHATTYQQTTQAE 120

[Close]
BLAST of Spg018720 vs. ExPASy TrEMBL
Match: A0A5D3BNX1 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00060 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-14
Identity = 54/110 (49.09%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 74  GTVCTQV-----------------EIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVS 133
           GTVCTQV                 EIELP+PD L+      E S   +  + + +G    
Sbjct: 42  GTVCTQVIFPLSTLSVLRDNDAVAEIELPVPDTLST---SAESSGSNSRSAGIVRG---- 101

Query: 134 LEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYP 167
              DDVCWLHAI   K+ G   GGVTTWSHATTYQQ TQ ESG DAGSYP
Sbjct: 102 ---DDVCWLHAIFRAKIVGGPGGGVTTWSHATTYQQTTQAESGWDAGSYP 141

[Close]
BLAST of Spg018720 vs. ExPASy TrEMBL
Match: A0A5D3C867 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold702G00170 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 67/190 (35.26%), Postives = 87/190 (45.79%), Query Frame = 0 

Query: 43  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQG 102
           PRGNRPSLQ  EL K  ++ +    LS  L       VEIELP+ D L      +  S G
Sbjct: 69  PRGNRPSLQTGELDK--TVIFPLSTLSVFLDNDAV--VEIELPVSDALP----TSAESFG 128

Query: 103 CTSCSTVQ-----------------------------QGQQVSLEKDDVCWLHAISWTKL 162
             S + ++                             +G    +  DDVCWLHA+   K 
Sbjct: 129 SNSSTWLELYFVSVHVEMFVRLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFQAKT 188

Query: 163 AGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDK 204
            G  RGGVTTWSHATTY Q TQ E G DAGSYPR         A+E  +  +     P+K
Sbjct: 189 VGGPRGGVTTWSHATTYLQTTQAELGWDAGSYPR--------SAQENGRPEQARPSDPEK 242

[Close]
BLAST of Spg018720 vs. ExPASy TrEMBL
Match: A0A5A7T6M8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001790 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 67/190 (35.26%), Postives = 87/190 (45.79%), Query Frame = 0 

Query: 43  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQG 102
           PRGNRPSLQ  EL K  ++ +    LS  L       VEIELP+ D L      +  S G
Sbjct: 218 PRGNRPSLQTGELDK--TVIFPLSTLSVFLDNDAV--VEIELPVSDALP----TSAESFG 277

Query: 103 CTSCSTVQ-----------------------------QGQQVSLEKDDVCWLHAISWTKL 162
             S + ++                             +G    +  DDVCWLHA+   K 
Sbjct: 278 SNSSTWLELYFVSVHVEMFVRLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFQAKT 337

Query: 163 AGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDK 204
            G  RGGVTTWSHATTY Q TQ E G DAGSYPR         A+E  +  +     P+K
Sbjct: 338 VGGPRGGVTTWSHATTYLQTTQAELGWDAGSYPR--------SAQENGRPEQARPSDPEK 391

The following BLAST results are available for this feature:
BLAST of Spg018720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066738.18.9e-1745.45DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK27886.1 D... [more]
KAA0025361.12.9e-1546.62uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa] >TYK... [more]
TYK00845.15.4e-1449.09zf-CCHC domain-containing protein [Cucumis melo var. makuwa][more]
KAA0037251.12.7e-1335.26DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK07530.12.7e-1335.26DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Spg018720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DVW94.3e-1745.45DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DIE31.4e-1546.62Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BNX12.6e-1449.09Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3C8671.3e-1335.26DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7T6M81.3e-1335.26DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of Spg018720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018720.1Spg018720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity