Spg018624 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018624
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSAM_MT_RSMB_NOP domain-containing protein
Locationscaffold3: 9648211 .. 9648604 (-)
RNA-Seq ExpressionSpg018624
SyntenySpg018624
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAATAAGATACCAACTGCTCAATCTTCAGAGGCAGTGCAAGAAGATAATGAGCCAGAGAAGAATGATGGAGAATGTGTTCACCCGCCAGTGAAGGATGGTAAAAAGAGGAAGGTTTTGGAAAACAATGACGTTGTTAATGGGAAAGAAGCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGGAAATTTCCTTCAAAAGAGGAAATCTCAAAAGCTAGGTGAGAACTTGGTTGATCTTCCCGTAATTGTAGCAGTAGTTTAGCCTTGAAAGCTGGTTGTTTTTGCCATATGGTTGTCTCTGAACGATTCTTATGGTTCATTTTGAACTCGATGCAGGGAAGAAAAACGACAAGCTTTGAGGGAAAAGAAAGTTGGGAGCAAGAAAGGGTAA

mRNA sequence

ATGAGCAATAAGATACCAACTGCTCAATCTTCAGAGGCAGTGCAAGAAGATAATGAGCCAGAGAAGAATGATGGAGAATGTGTTCACCCGCCAGTGAAGGATGGTAAAAAGAGGAAGGTTTTGGAAAACAATGACGTTGTTAATGGGAAAGAAGCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGGAAATTTCCTTCAAAAGAGGAAATCTCAAAAGCTAGGGAAGAAAAACGACAAGCTTTGAGGGAAAAGAAAGTTGGGAGCAAGAAAGGGTAA

Coding sequence (CDS)

ATGAGCAATAAGATACCAACTGCTCAATCTTCAGAGGCAGTGCAAGAAGATAATGAGCCAGAGAAGAATGATGGAGAATGTGTTCACCCGCCAGTGAAGGATGGTAAAAAGAGGAAGGTTTTGGAAAACAATGACGTTGTTAATGGGAAAGAAGCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGGAAATTTCCTTCAAAAGAGGAAATCTCAAAAGCTAGGGAAGAAAAACGACAAGCTTTGAGGGAAAAGAAAGTTGGGAGCAAGAAAGGGTAA

Protein sequence

MSNKIPTAQSSEAVQEDNEPEKNDGECVHPPVKDGKKRKVLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKKG
Homology
[Close]
BLAST of Spg018624 vs. NCBI nr
Match: XP_038897895.1 (probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 5.2e-22
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 1   MSNKIPTAQSS----EAVQEDNEP-----EKNDGECVHPPVKDGKKR-KVLENNDVVNGK 60
           MSNKI TA+SS    EAV+EDN+      EKNDGEC+HP V D KKR KV +N+DV NGK
Sbjct: 511 MSNKISTARSSESLEEAVEEDNDAGKSGNEKNDGECLHPQVNDSKKRKKVSQNHDVGNGK 570

Query: 61  EAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           E+KPTVEKRKKRKFPS+EEI++AREEKRQALREKK G+KK
Sbjct: 571 ESKPTVEKRKKRKFPSREEIARAREEKRQALREKKAGNKK 610

[Close]
BLAST of Spg018624 vs. NCBI nr
Match: XP_022936087.1 (probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X2 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-21
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 1   MSNKIPTAQSSEAVQEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE ++E  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 504 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 563

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 564 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 604

[Close]
BLAST of Spg018624 vs. NCBI nr
Match: XP_022936085.1 (probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-21
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 1   MSNKIPTAQSSEAVQEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE ++E  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 508 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 567

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 568 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 608

[Close]
BLAST of Spg018624 vs. NCBI nr
Match: KAG6592106.1 (26S rRNA (cytosine-C(5))-methyltransferase NOP2B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024977.1 putative 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-21
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 1   MSNKIPTAQSSEAVQEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE ++E  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 508 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 567

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 568 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 608

[Close]
BLAST of Spg018624 vs. NCBI nr
Match: XP_023525424.1 (probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 9.8e-21
Identity = 68/104 (65.38%), Postives = 79/104 (75.96%), Query Frame = 0 

Query: 1   MSNKIPTAQSSEAVQED------------NEPEKNDGECVHPPVKDGKKRK--VLENNDV 60
           MSNKIPTAQSSEA++E+            +  EKNDGEC+HP V DGKKRK  V E ++V
Sbjct: 511 MSNKIPTAQSSEALEEEAVEEEDFEAEKKSANEKNDGECLHPQVNDGKKRKKVVSEKHEV 570

Query: 61  VNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
            NG+E+KP VEKRKKRKFPS+EEISKAREEKR+ALREKK G  K
Sbjct: 571 ENGEESKPGVEKRKKRKFPSREEISKAREEKREALREKKAGGSK 614

[Close]
BLAST of Spg018624 vs. ExPASy TrEMBL
Match: A0A6J1FCL8 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442793 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.6e-21
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 1   MSNKIPTAQSSEAVQEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE ++E  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 508 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 567

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 568 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 608

[Close]
BLAST of Spg018624 vs. ExPASy TrEMBL
Match: A0A6J1F7G0 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442793 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.6e-21
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 1   MSNKIPTAQSSEAVQEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE ++E  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 504 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 563

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 564 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 604

[Close]
BLAST of Spg018624 vs. ExPASy TrEMBL
Match: A0A6J1FRL9 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111446614 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 70/103 (67.96%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 1   MSNKIPTAQSSEAV------QEDNEPEK-----NDGECVHPPVKDGKKRK--VLENNDVV 60
           MSNKIPTAQSSEA+      +ED E EK     NDGEC+HP   DGKKRK  V E ++V 
Sbjct: 507 MSNKIPTAQSSEALEEEAVEEEDIETEKSSNETNDGECLHPQANDGKKRKKVVSEKHEVE 566

Query: 61  NGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           NG+E+KP VEKRKKRKFPS+EEISKAREEKRQALREKK G  K
Sbjct: 567 NGEESKPGVEKRKKRKFPSREEISKAREEKRQALREKKAGGSK 609

[Close]
BLAST of Spg018624 vs. ExPASy TrEMBL
Match: A0A6J1J1T4 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111480547 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.4e-20
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 0 

Query: 1   MSNKIPTAQSSEAVQED-----------NEPEKNDGECVHPPVKDGKKRK--VLENNDVV 60
           MSNKIPT QSSEA++E+           +  EK DGEC+HP V DGKKRK  V E ++V 
Sbjct: 513 MSNKIPTTQSSEALEEEAVEEEDIEAEKSANEKTDGECLHPQVNDGKKRKKVVSEKHEVE 572

Query: 61  NGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           NG+E+KP VEKRKKRKFPS+EEISKAREEKRQALREKK G  K
Sbjct: 573 NGEESKPGVEKRKKRKFPSREEISKAREEKRQALREKKAGGSK 615

[Close]
BLAST of Spg018624 vs. ExPASy TrEMBL
Match: A0A6J1CFT7 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Momordica charantia OX=3673 GN=LOC111010417 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MSNKIPTAQSSE----AVQEDNEPEK-----NDGECVHPPVK--DGKKRK-VLENNDVVN 60
           MSNKIPTA+SS+    A++EDNE +K     NDGEC+HP  +  +GKKRK VL+N+DV N
Sbjct: 512 MSNKIPTAESSDPLETAMEEDNESDKSENEENDGECLHPRKEQVEGKKRKEVLQNHDVEN 571

Query: 61  GKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKKG 92
           G+E+ P  EKRKKRKFPS+ EISKAREEKRQALREKK G KKG
Sbjct: 572 GEESTPATEKRKKRKFPSRMEISKAREEKRQALREKKAGGKKG 614

The following BLAST results are available for this feature:
BLAST of Spg018624 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897895.15.2e-2271.00probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Benincasa hispida][more]
XP_022936087.17.5e-2170.30probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X2 [Cucurbita ... [more]
XP_022936085.17.5e-2170.30probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1 [Cucurbita ... [more]
KAG6592106.17.5e-2170.3026S rRNA (cytosine-C(5))-methyltransferase NOP2B, partial [Cucurbita argyrosperm... [more]
XP_023525424.19.8e-2165.38probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita pepo subsp.... [more]
BLAST of Spg018624 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018624 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FCL83.6e-2170.30probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X1 OS=Cucurbit... [more]
A0A6J1F7G03.6e-2170.30probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X2 OS=Cucurbit... [more]
A0A6J1FRL91.4e-2067.96probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Cucurbita moschata ... [more]
A0A6J1J1T42.4e-2065.05probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Cucurbita maxima OX... [more]
A0A6J1CFT79.0e-2066.02probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Momordica charantia... [more]
BLAST of Spg018624 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018624.1Spg018624.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006396 RNA processing
cellular_component GO:0005730 nucleolus
molecular_function GO:0003723 RNA binding
molecular_function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity