Spg018589 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018589
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold3: 6302085 .. 6304577 (-)
RNA-Seq ExpressionSpg018589
SyntenySpg018589
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGGGAATTGTTCGAGGTGTCTACCTTACTTTTGCTCTTGAGGGACGTCCGTGTTCATAAGGGGAGAAGGGATCTTCGCACTTGGACCCCTTGTTCATCTCCGAGTTTCTCCTCTAGCTCTTTGTTCCATTTCCTGTTTGTTTCCTTGCTCCCCCTAAGTCATCTCTTTGTTTTCCTCATTCTGAAAGGTTAAGATTCGTAAGAAGGTTAATTTCTTTGCTAGCAAATGTTACATAGGAAAGTCAATACTTTTGACTGTCTGCCTACACTCCTTGGAGCCTCACTGATGCTCCCATTGGAAATTTTTGTCCAAAGACCTCAATAATACCTTGTTGAGATGCCATTTTACTCAATTGATTTGGTCCAAACTCTTGGATCTCTTTGGAGTTTCTTTGGCGTGGGGTGGTGATTGTTGGGCAATCATGGAAGAGATTTTGCTGAATCCTCCCTCCCAAAAGGAAGGCGAAAATCCTTTGGCAGACTTGCTTTAGCAGAGGTGGAAGGGGAGTTGTGGAAGGTGATTAGACATAATGCCTCGGTTTGGACTTTTGTGACTAAGGATTTTTGTAAATATCAGATAGGTTTCATCCTTTTGGATTGTGAGTCCTTTTTTGTAGTTTGTGGGCTATGTTTGTTACATTCTTTCATTTTTTCTCAATGGGAGTTGGATTTCTTGTTAAAAAAAAGAAGTGCTACATAATGTTTCTAATTCAAAGTTTGCTGACTTTAGGAAGTGCTATATTGATCTTGTTAAAATCTAACACAGTTCGTGTTAGCACTTACACATGGTGGATAGCATGTAATAGTGTGCTCAAAGAGATGTTGTTTTGATTATTTAGGTTTGAGAAGAATAATATATCCGGACTTATTCAAGAATGTTAACGTAGTTTCTTTTTTACATAGGAGAAAGACTAATCTCAAGTAAGGAAAAGAATAAAAGTAAATACAACATAATTTTTAATGATCGACAACTAATTAAATCAGACCAAAATTGGGAAATGGGGAGTAAATCCAATTTTGAGCCTCCGGCGATCCAAAATCGAATTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCACACAATCGCTTGCGAGTCCGAAAGAGCGCGATTGTGACAGTTGGTATTAGAGCCTAGTTGGCTCCTGAAGTTGAAAGCTGAAAATATGTCGTCAACCAAGCAGTTGGCAAAGACCCACGTGGAACGTTTCGTAGAGATCGAAGAGCAATTGTTCTACTTGAGGGAAGTCCCTGACGCTATTCGGTTTGTGGAATCTCGACTGGATGAGATTTCGACCAAAACCAACAAAGTTGATGCAGTACCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTCGAGAACCTTGAAAGTAAAGCTACTCGACCTAGTAGCTATGAGCGTGGTGATAGCTCGTCGGGCTCTGCAGCCCTGATGGAGGAGCGCGTCGATGGTTTGGACAACTCCGAGAAAGCGATAGTCCAGATGGTTACGGACTTATCAGACAATGTGAAAGCTGCCCTTGATGTGGTCAGGGCCGAAGTGGCGGATCTGAGCGCCATACTAAACCTCACGATGAGAGCAGTGGGGAACCAAGCCTCGGCAGGGGGTGCAGTCCAATTCAACAAGGTTAAGGTACCTGAGCCTAAGCCCTTTTGTGGGGTTTTAGATGCAAAGGCTCTTGAGAGCTTCATTTTTGATCTTGAACAATACTTTTGAGCTACAAACACTATGACAGAAGAGTCGAAGATAACATTGGCTACGATGCATCTTGCAGACAATGCAAAGTTGTGGTGGAGGTCCCGATTCATGGACATCCAAGATAGTCGTTGTACCATAGACAGTTGGGAAAAACTGAAACAAGAACTTCGTTCTCAGTTGTTCCCCAAGAATGTAGAAGTTTTGGCAAGATGGAAGTTGAGAGAGCTCAAACATACCGGCAACATTTGGGATTATGTGAAACAGTTCTCTGGATTAATATTAGACATTCGTGATATGTATGTCGGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGATTGAAGCCATGGGCGAAATCCAAGTTATATGAACAACGAGTGCAAGATCTTTCGACCGCCTATGCAGCGGCGGAGGGATTGTTTGATCTCAGTAATGATCTGTCCCAAGACGTGAGGCGGAATAAAGCTCCCTCTAATGGAGGAAATAGAAACAATCGTCCAGGCTCTCCCAAAAGTGGAGGAGGAGACAGACAAGGAGGGGGAGACCGTAGACCCTTCTAGTAGAGAGGTGGAAATTCGTGGCGAGGGCCATACCAACAAAACAACTACTACCAGAGGCCCATTTCGTGCTTCATATGTAAGGGTGCCCATTGGGTGTCTGATTGCCCAAAGCAGATAGCCCTCCAAGCTTTTCAAGCCACATTTGCCATCGATTCTGAAGTTGAAACGGAAGCCGTGGAAACCGAGACACCGCAAGTTGAAGCTGAGAACAACCCTTGA

mRNA sequence

ATGAATAGGGAATTGTTCGAGGTGTCTACCTTACTTTTGCTCTTGAGGGACGTCCGTGTTCATAAGGGGAGAAGGGATCTTCGCACTTGGACCCCTTGTTCATCTCCGAGTTTCTCCTCTAGCTCTTTGTTCCATTTCCTGCGAAAATCCTTTGGCAGACTTGCTTTAGCAGAGGTGGAAGGGGAGTTGTGGAAGGTGATTAGACATAATGCCTCGGTTTGGACTTTTGTGACTAAGGATTTTTGTAAATATCAGATAGGTTTCATCCTTTTGGATTGTGAGTCCTTTTTTTTGGTATTAGAGCCTAGTTGGCTCCTGAAGTTGAAAGCTGAAAATATGTCGTCAACCAAGCAGTTGGCAAAGACCCACGTGGAACGTTTCGTAGAGATCGAAGAGCAATTGTTCTACTTGAGGGAAGTCCCTGACGCTATTCGGTTTGTGGAATCTCGACTGGATGAGATTTCGACCAAAACCAACAAAGTTGATGCAGTACCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTCGAGAACCTTGAAAAAACAATCGTCCAGGCTCTCCCAAAAGTGGAGGAGGAGACAGACAAGGAGGGGGAGACCGTAGACCCTTCTAGTAGAGAGGGTGCCCATTGGGTGTCTGATTGCCCAAAGCAGATAGCCCTCCAAGCTTTTCAAGCCACATTTGCCATCGATTCTGAAGTTGAAACGGAAGCCGTGGAAACCGAGACACCGCAAGTTGAAGCTGAGAACAACCCTTGA

Coding sequence (CDS)

ATGAATAGGGAATTGTTCGAGGTGTCTACCTTACTTTTGCTCTTGAGGGACGTCCGTGTTCATAAGGGGAGAAGGGATCTTCGCACTTGGACCCCTTGTTCATCTCCGAGTTTCTCCTCTAGCTCTTTGTTCCATTTCCTGCGAAAATCCTTTGGCAGACTTGCTTTAGCAGAGGTGGAAGGGGAGTTGTGGAAGGTGATTAGACATAATGCCTCGGTTTGGACTTTTGTGACTAAGGATTTTTGTAAATATCAGATAGGTTTCATCCTTTTGGATTGTGAGTCCTTTTTTTTGGTATTAGAGCCTAGTTGGCTCCTGAAGTTGAAAGCTGAAAATATGTCGTCAACCAAGCAGTTGGCAAAGACCCACGTGGAACGTTTCGTAGAGATCGAAGAGCAATTGTTCTACTTGAGGGAAGTCCCTGACGCTATTCGGTTTGTGGAATCTCGACTGGATGAGATTTCGACCAAAACCAACAAAGTTGATGCAGTACCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTCGAGAACCTTGAAAAAACAATCGTCCAGGCTCTCCCAAAAGTGGAGGAGGAGACAGACAAGGAGGGGGAGACCGTAGACCCTTCTAGTAGAGAGGGTGCCCATTGGGTGTCTGATTGCCCAAAGCAGATAGCCCTCCAAGCTTTTCAAGCCACATTTGCCATCGATTCTGAAGTTGAAACGGAAGCCGTGGAAACCGAGACACCGCAAGTTGAAGCTGAGAACAACCCTTGA

Protein sequence

MNRELFEVSTLLLLLRDVRVHKGRRDLRTWTPCSSPSFSSSSLFHFLRKSFGRLALAEVEGELWKVIRHNASVWTFVTKDFCKYQIGFILLDCESFFLVLEPSWLLKLKAENMSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTIVQALPKVEEETDKEGETVDPSSREGAHWVSDCPKQIALQAFQATFAIDSEVETEAVETETPQVEAENNP
Homology
[Close]
BLAST of Spg018589 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 8.3e-17
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MS+TKQL K+H++R VEIEE+L +LRE+PD +R+VESRLDEISTK + +D V  R+DG+ 
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 173 IQELMMRVENLEKTI 188
           I+ELM+RVE LE  +
Sbjct: 61  IRELMLRVETLEDKV 75

[Close]
BLAST of Spg018589 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 45.8 bits (107), Expect = 6.4e-01
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 211 EGAHWVSDCPKQIALQAFQATFAIDSEVETEAVETETPQVEAENNP 257
           +G H V +CP + AL+AFQAT   D  +E E  ET+TP  +A++NP
Sbjct: 354 KGPHRVYECPNRAALRAFQATLTNDRAIEPEGPETDTPPEDADDNP 399


HSP 2 Score: 97.1 bits (240), Expect = 2.4e-16
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MS+TKQL+K+HV+R VEIEEQL YLREVPD +R +E+R+DE S K  ++DAV  R+DG+P
Sbjct: 1   MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 173 IQELMMRVENLE 185
           IQ++ MRVE LE
Sbjct: 61  IQDIAMRVETLE 72

[Close]
BLAST of Spg018589 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-16
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MS+TKQL+K+HV+R VEIEEQL YLREVPD++R +E+R+DE S K  ++DAV  RVDG+P
Sbjct: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 173 IQELMMRVENLE 185
           IQ++ MRVE  E
Sbjct: 61  IQDIAMRVETXE 72

[Close]
BLAST of Spg018589 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-15
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MSS+   +K   +R VE+EEQ+ YL EVPD+IR++ESRLDEIS KTN +DAV GRV+G P
Sbjct: 1   MSSSNPSSKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISEKTNTIDAVAGRVEGFP 60

Query: 173 IQELMMRVENLEKTI 188
           IQELM RV+ LE TI
Sbjct: 61  IQELMTRVDALETTI 75

[Close]
BLAST of Spg018589 vs. NCBI nr
Match: KAA0037573.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-15
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MSS+  L K   +R VE+EEQ+ YL EVPD+IR++ESRL+EIS KTN +DAV GRV+G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 173 IQELMMRVENLEKTI 188
           IQELM RV+ LE T+
Sbjct: 61  IQELMTRVDALETTV 75

[Close]
BLAST of Spg018589 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-17
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MS+TKQL K+H++R VEIEE+L +LRE+PD +R+VESRLDEISTK + +D V  R+DG+ 
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 173 IQELMMRVENLEKTI 188
           I+ELM+RVE LE  +
Sbjct: 61  IRELMLRVETLEDKV 75

[Close]
BLAST of Spg018589 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-01
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 211 EGAHWVSDCPKQIALQAFQATFAIDSEVETEAVETETPQVEAENNP 257
           +G H V +CP + AL+AFQAT   D  +E E  ET+TP  +A++NP
Sbjct: 354 KGPHRVYECPNRAALRAFQATLTNDRAIEPEGPETDTPPEDADDNP 399


HSP 2 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MS+TKQL+K+HV+R VEIEEQL YLREVPD +R +E+R+DE S K  ++DAV  R+DG+P
Sbjct: 1   MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 173 IQELMMRVENLE 185
           IQ++ MRVE LE
Sbjct: 61  IQDIAMRVETLE 72

[Close]
BLAST of Spg018589 vs. ExPASy TrEMBL
Match: A0A6J1DK29 (uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021829 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MS+TKQL+K+HV+R VEIEEQL YLREVPD++R +E+R+DE S K  ++DAV  RVDG+P
Sbjct: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 173 IQELMMRVENLE 185
           IQ++ MRVE  E
Sbjct: 61  IQDIAMRVETXE 72

[Close]
BLAST of Spg018589 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-16
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MSS+  L K   +R VE+EEQ+ YL EVPD+IR++ESRL+EIS KTN +DAV GRV+G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 173 IQELMMRVENLEKTI 188
           IQELM RV+ LE T+
Sbjct: 61  IQELMTRVDALETTV 75

[Close]
BLAST of Spg018589 vs. ExPASy TrEMBL
Match: A0A5A7T3M3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002020 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-16
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 113 MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMP 172
           MSS+  L K   +R VE+EEQ+ YL EVPD+IR++ESRL+EIS KTN +DAV GRV+G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 173 IQELMMRVENLEKTI 188
           IQELM RV+ LE T+
Sbjct: 61  IQELMTRVDALETTV 75

The following BLAST results are available for this feature:
BLAST of Spg018589 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155185.18.3e-1761.33uncharacterized protein LOC111022320 [Momordica charantia][more]
XP_022155185.16.4e-0147.83uncharacterized protein LOC111022320 [Momordica charantia][more]
XP_022154605.13.2e-1663.89uncharacterized protein LOC111021829 [Momordica charantia][more]
TYK07954.11.2e-1564.00reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0037573.11.2e-1562.67reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg018589 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018589 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DLQ64.0e-1761.33uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DLQ63.1e-0147.83uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DK291.5e-1663.89uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A5D3BYE65.8e-1662.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T3M35.8e-1662.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
BLAST of Spg018589 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018589.1Spg018589.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0006412 translation
molecular_function GO:0003723 RNA binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity