Spg018563 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018563
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationscaffold3: 19377994 .. 19381234 (+)
RNA-Seq ExpressionSpg018563
SyntenySpg018563
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGATGCCCAAAGGAAATAAAGAGAGGCCCAAATTCAAGCCCAAAATCGCGCCAGAAAGTTCTAGAATTCGCCTAGCGTCGAGACGCTGTAGGGACAGCGTCTTCTTGGCCGGCAAGTCGATGACGTCACAGCGTCGCGACGCTGTGCCAATAGCGTCGCGACGCTACCCCATTTCCGAGCCTATAAATAGCGCCCCTTGGATCCATTTTTTAGCATTAATCATCATTTCCTTCATTCTTTCCTTTCTTTCCTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCAAGCCTTTTTGAGAGTTCTTCTAGTGGGAAAATTTTGGGAGTTTTTGGGGAGCACTCTAGGAGGCTCAAGGGAAGCTCGGAGGGACTCCAAGCGCCAGCGACGAGGTCTTCGACGGTCAATTCCTTCCCTTTTATTGTGCTCTTAATTATGTTTTTCATTGTAAATTTTGTGGATATTTTAGCTATGTATAACTAAACCCCAGTTTGTGGTTTTGAAATGAAATTATAGTCAAAATGTTGTTATAATTGCCTATCTCTTGCCCTTTTTCCTAATTATTTGTATGGATGTGCTTAGTGTTGTATGCAATCTGGCCAATTGTGTATTGATATGATTCTTAATGGAGACTCGACGGAGAGAAGTTAGGATGGATCATAATCCATGCAACTAGTTTAATTGTCCGTCGTGACAACGTGATTAGTTGATTAAACTTAGATTCCTAAAATGAATCGGAGCGTAATAATTAATGAATTTTAATGGCGCTAAGGACACTTAGGTTGTTAAAATGAATTAATTACAATTAGGGGAGACCAACAGGAGAACCTATGTGATTAACGGAGATTCTAGGATTATAATTAGTTGGGCATCGAGATAGGATAACTATAATAAATGTTTAGCTAATAATCACTACTACAAAAATAGCCTTTAATGACGGACAGAAAAAAAGGGGCGGGGCCTTTAATGACAGACGAAAAACGCGCGCCACTTTTAATGTCGGACGCGCGTTTTTCCGAAAAAACGTACTTTTAATGACGGACATTGCCCGTCATTAAAAACTACCTTTAATGGCGGGCATAGCCCGTCGTTAAAAGCCAGTTTTACTTTTTTTTTTTTTTTTAGTTTTTAAAAACATAAAAAGGAAAATATATTTTCTCTCTCCCCAAAAAGTTCACCTGCTCTCTCTCCCCGACAAGCAAATCGCTTGAAACCCTACCTTCTTCAACCTTCGGCCACCGCAGCTCGTTCCCTTGTCTTCAACCCACGACGTTGACCAAACCTCAGCAACGGCAGCAGGATCTTCACCGGCGGCGACATTTCTGACCTCCGTCCCCTTGTTTCTCGCATGGGTTTCGACCAAATCTCACCTTCGTCGACTTCTTTCTCGCATGGGTTTCGACCCTGTTCCCCTCACCGTCGGCCAGCTACTTTGTCTCATAACTCATATGGTCGATTTAAGATTGTTGCTCACTTGGGATGACTCTTTGGCATGTTGCTTTCTTTATGGTCTTATTATGGAATTTCTTGCCTGAGAGAAATAGCAGGGTACTTCGACAGGTAGAGTGCTCTTGGAGGAGGTTTGCGCCTTGGCTAGGTTCAATATCCCACTTTGGGTCTTGACTACTAAGGAGATTTTGTGATTACCTTTATCTTTCATCTTTTGAGGCAGAGCTCTTTTTTGTAATTGTTTAGTTTGTTAGCTTTTTATTCTTTGTTTCTGGCTCTTTTTGCCTTAGGTTTCTTCTTTGTATTGCTCGTGTGTGTGTGTATTGTATATTCTTTTATATGGTTGGTTTCTTCATTAAAAAGAATCCCTTCTTTTTCCCACATGCTGGAAGGTTAAATTTTTTTGTGTGGCTGACTACTTTTTGGAGGATCTACAACATTTGACTTTGTCCAGTGGCAAAGTCATCAGATTTCAAGGTTTTCTTAATCACTGTTTATCTCCTCTACTGATTTCTATTCCCAAATAGTTTTACTATAATCAAATCTGCGTGTTAAATGTAATTGTCACAGATGAAGATGTTTGATGCTTGATCTTATTTCCTTTTCAAGATTGTCACCCTCCAGTTAGTCTTATTTGTTTGAGTTATCATTGTTCATATTATTTGACCAGTTTGTTGTTGTACCATTGTGTGACAGTGTGAAATGCACTTTTTCCTCTTTTTATCTTACAGGATGGACATGACTCCGAAGATGCAAAGCAAAGCACAGTGGATATGACTGTTTTTGTGAGTTAATTTTCTTTTCTTTCTGTTTATTCTCTTTGTTTTTCCCAATTTGAGTGTCAAGCCTAACTTTTTTGATAGGCTGGTTTTATGAAGTTTTCATTTTTTTGTTGATGGGTACTCTCTTTCTGACTAACATTTGATCCCTAAGGTGCTCTTGATTGTTTCTTGGTGGGTTATTGTTAAATTGGTATTAACTTTTTTTTTTCCTTTTTTTTCAGGTGCAAAATCTTCTTCAACAGATGGTGAGTTTCAGTAAGTGTAAGTTTCAGGTGCAAAATGTTGTGATGTATAATGCAATAATGGTTGGCTTGCTCCAACAAGAGAAAATTGAAGATGAATGTGCGTATAAAGCCCTCAATCTTTTCTTTGAGATGAAAAGTTGTGGAATAAAAGCTTCCATGTTTACATATTCAAGCTTACTTAAAGCTTGTATTACTGTTGAAGTTTTTGAATTTGCAAAGCAAGAATGGCCTTCAGTCAGACGAGTACATTGGGGCTGTTCTTATTGATTTGCATTCTTTTTTAGGTTCATTGAAGGATGTTTTGTCATGTTTTAACTCAATTCATAATTTGACGGTAGTCCCAATGACAATAATGATTGTTGGTTATCTTAAAGGGAGAATTTGAAAGTGCATTGTCTTTGTTTTATGAACTTTTGAAATCCAAAGAGTAGCCTGGTGAATTCATATTGTCCACAATCTTGAGTGCTTGTGCAGATATGGGCATGTTAAGGATCTGGAGAACAAATCCAGGGGTATGCAACAAAAATTGGCATCTCGAGATCCATCATCTTTCAAAATTCACAGATTTGGATGTATGCTAAGTCTGGAGATCTATATTCAGCCAATCTAACCTTTCAACAGACTGAAAATCCTGATGTTGTGTCCTGGTCAACAATGATCTGCAGCAATGCACAGCATGGGCATGCAATGGAGGCTTTGAGATTCTTTGAGCTGATGAAGAGTTGTGGAATTGAGCCTAATCAATTTGCCTTGGAGTTCTAA

mRNA sequence

ATGAAGATGATGCCCAAAGGAAATAAAGAGAGGCCCAAATTCAAGCCCAAAATCGCGCCAGAAAGTTCTAGAATTCGCCTAGCGTCGAGACGCTGTAGGGACAGCGTCTTCTTGGCCGGCAAGTCGATGACGTCACAGCGTCGCGACGCTGTGCCAATAGCGTCGCGACGCTACCCCATTTCCGAGCCTATAAATAGCGCCCCTTGGATCCATTTTTTAGCATTAATCATCATTTCCTTCATTCTTTCCTTTCTTTCCTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCAAGCCTTTTTGAGAGTTCTTCTAGTGGGAAAATTTTGGGAGTTTTTGGGGAGCACTCTAGGAGGCTCAAGGGAAGCTCGGAGGGACTCCAAGCGCCAGCGACGAGGGTACTTCGACAGGATGGACATGACTCCGAAGATGCAAAGCAAAGCACAGTGGATATGACTGTTTTTGTGCAAAATCTTCTTCAACAGATGGTGAGTTTCAGTAAGTGTAAGTTTCAGGTGCAAAATGTTGTGATGTATAATGCAATAATGGTTGGCTTGCTCCAACAAGAGAAAATTGAAGATGAATGTGCGTATAAAGCCCTCAATCTTTTCTTTGAGATGAAAAGTTGTGGAATAAAAGCTTCCATGTTTACATATTCAAGCTTACTTAAAGCTTGTATTACTGTTGAAGTTTTTGAATTTGCAAAGCAAGAATGGCCTTCAATTTGGATGTATGCTAAGTCTGGAGATCTATATTCAGCCAATCTAACCTTTCAACAGACTGAAAATCCTGATGTTGTGTCCTGGTCAACAATGATCTGCAGCAATGCACAGCATGGGCATGCAATGGAGGCTTTGAGATTCTTTGAGCTGATGAAGAGTTGTGGAATTGAGCCTAATCAATTTGCCTTGGAGTTCTAA

Coding sequence (CDS)

ATGAAGATGATGCCCAAAGGAAATAAAGAGAGGCCCAAATTCAAGCCCAAAATCGCGCCAGAAAGTTCTAGAATTCGCCTAGCGTCGAGACGCTGTAGGGACAGCGTCTTCTTGGCCGGCAAGTCGATGACGTCACAGCGTCGCGACGCTGTGCCAATAGCGTCGCGACGCTACCCCATTTCCGAGCCTATAAATAGCGCCCCTTGGATCCATTTTTTAGCATTAATCATCATTTCCTTCATTCTTTCCTTTCTTTCCTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCAAGCCTTTTTGAGAGTTCTTCTAGTGGGAAAATTTTGGGAGTTTTTGGGGAGCACTCTAGGAGGCTCAAGGGAAGCTCGGAGGGACTCCAAGCGCCAGCGACGAGGGTACTTCGACAGGATGGACATGACTCCGAAGATGCAAAGCAAAGCACAGTGGATATGACTGTTTTTGTGCAAAATCTTCTTCAACAGATGGTGAGTTTCAGTAAGTGTAAGTTTCAGGTGCAAAATGTTGTGATGTATAATGCAATAATGGTTGGCTTGCTCCAACAAGAGAAAATTGAAGATGAATGTGCGTATAAAGCCCTCAATCTTTTCTTTGAGATGAAAAGTTGTGGAATAAAAGCTTCCATGTTTACATATTCAAGCTTACTTAAAGCTTGTATTACTGTTGAAGTTTTTGAATTTGCAAAGCAAGAATGGCCTTCAATTTGGATGTATGCTAAGTCTGGAGATCTATATTCAGCCAATCTAACCTTTCAACAGACTGAAAATCCTGATGTTGTGTCCTGGTCAACAATGATCTGCAGCAATGCACAGCATGGGCATGCAATGGAGGCTTTGAGATTCTTTGAGCTGATGAAGAGTTGTGGAATTGAGCCTAATCAATTTGCCTTGGAGTTCTAA

Protein sequence

MKMMPKGNKERPKFKPKIAPESSRIRLASRRCRDSVFLAGKSMTSQRRDAVPIASRRYPISEPINSAPWIHFLALIIISFILSFLSLAPLEPLSRLSSLFESSSSGKILGVFGEHSRRLKGSSEGLQAPATRVLRQDGHDSEDAKQSTVDMTVFVQNLLQQMVSFSKCKFQVQNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFEFAKQEWPSIWMYAKSGDLYSANLTFQQTENPDVVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNQFALEF
Homology
[Close]
BLAST of Spg018563 vs. NCBI nr
Match: XP_023523805.1 (pentatricopeptide repeat-containing protein At3g13880 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023523806.1 pentatricopeptide repeat-containing protein At3g13880 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-43
Identity = 116/247 (46.96%), Postives = 122/247 (49.39%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQEKIED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE FE
Sbjct: 183 KNVVMYNAMMAGLLQQEKIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIAVEDFE 242

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 243 FAKQIHALICKNGLQSDEYIGSVLIDLYFLLGSIKDAFSCFNSIHNLTIVPITAMIVGYL 302

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 303 QKGEFERALALFYELLASKEKPDEFILSTILSACANMGMLRSGEQIQGYASKIGISRYTI 362

[Close]
BLAST of Spg018563 vs. NCBI nr
Match: XP_022932499.1 (pentatricopeptide repeat-containing protein At3g13880 isoform X2 [Cucurbita moschata])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-43
Identity = 116/247 (46.96%), Postives = 122/247 (49.39%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQEKIED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE FE
Sbjct: 183 KNVVMYNAMMAGLLQQEKIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIAVEDFE 242

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 243 FAKQIHALICKNGLQSDEYIGSVLIDLYFLLGSIKDAFSCFNSIHNLTIVPITAMIVGYL 302

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 303 QKGEFERALALFYELLASKEKPDEFILSTILSACANMGMLRSGEQIQGYANKIGISRYTI 362

[Close]
BLAST of Spg018563 vs. NCBI nr
Match: XP_023523804.1 (pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-43
Identity = 116/247 (46.96%), Postives = 122/247 (49.39%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQEKIED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE FE
Sbjct: 327 KNVVMYNAMMAGLLQQEKIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIAVEDFE 386

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 387 FAKQIHALICKNGLQSDEYIGSVLIDLYFLLGSIKDAFSCFNSIHNLTIVPITAMIVGYL 446

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 447 QKGEFERALALFYELLASKEKPDEFILSTILSACANMGMLRSGEQIQGYASKIGISRYTI 506

[Close]
BLAST of Spg018563 vs. NCBI nr
Match: XP_022932498.1 (pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Cucurbita moschata])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-43
Identity = 116/247 (46.96%), Postives = 122/247 (49.39%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQEKIED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE FE
Sbjct: 327 KNVVMYNAMMAGLLQQEKIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIAVEDFE 386

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 387 FAKQIHALICKNGLQSDEYIGSVLIDLYFLLGSIKDAFSCFNSIHNLTIVPITAMIVGYL 446

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 447 QKGEFERALALFYELLASKEKPDEFILSTILSACANMGMLRSGEQIQGYANKIGISRYTI 506

[Close]
BLAST of Spg018563 vs. NCBI nr
Match: XP_022973377.1 (pentatricopeptide repeat-containing protein At3g13880 [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-43
Identity = 116/247 (46.96%), Postives = 122/247 (49.39%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQEKIED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE FE
Sbjct: 327 KNVVMYNAMMAGLLQQEKIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIAVEDFE 386

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 387 FAKQTHALICKNGLQSDEYIGSVLIDLYFLLGSIKDAFSCFNSIHNLTIVPITAMIVGYL 446

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 447 QKGEFERALALFYELLSSKEKPDEFILSTILSACANMGMLRSGEQIQGYANKIGISRYTI 506

[Close]
BLAST of Spg018563 vs. ExPASy Swiss-Prot
Match: Q9SI53 (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-13
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 0 

Query: 174 NVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFEF 233
           + +++N+I+ G  Q  + +      AL LF  MK  G  A   T +S+L+AC  + + E 
Sbjct: 224 DAIVWNSIIGGFAQNSRSD-----VALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 283

Query: 234 AKQEWPSIW--------------MYAKSGDLYSANLTFQQTENPDVVSWSTMICSNAQHG 293
             Q    I               MY K G L  A   F Q +  DV++WSTMI   AQ+G
Sbjct: 284 GMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNG 343

Query: 294 HAMEALRFFELMKSCGIEPNQFAL 304
           ++ EAL+ FE MKS G +PN   +
Sbjct: 344 YSQEALKLFERMKSSGTKPNYITI 362

[Close]
BLAST of Spg018563 vs. ExPASy Swiss-Prot
Match: Q9LYU9 (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-12
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = 0 

Query: 174 NVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIK-ASMFTYSSLLKACITVEVFE 233
           N V ++AI+ G  Q  + E+     A+  F  ++S      + FTY+S+ +AC  +    
Sbjct: 350 NDVSWSAIISGYCQMSQFEE-----AVKTFKSLRSKNASILNSFTYTSIFQACSVLADCN 409

Query: 234 FAKQ----------------EWPSIWMYAKSGDLYSANLTFQQTENPDVVSWSTMICSNA 293
              Q                E   I MY+K G L  AN  F+  +NPD+V+W+  I  +A
Sbjct: 410 IGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHA 469

Query: 294 QHGHAMEALRFFELMKSCGIEPN 300
            +G+A EALR FE M SCG++PN
Sbjct: 470 YYGNASEALRLFEKMVSCGMKPN 487

[Close]
BLAST of Spg018563 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-12
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +N V +NA++ G  ++   E     KAL LF  M   G + S F+Y+SL  AC +    E
Sbjct: 225 RNDVSWNALIAGHARRSGTE-----KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLE 284

Query: 233 FAKQEWPSIW------------------MYAKSGDLYSANLTFQQTENPDVVSWSTMICS 292
             K  W   +                  MYAKSG ++ A   F +    DVVSW++++ +
Sbjct: 285 QGK--WVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 344

Query: 293 NAQHGHAMEALRFFELMKSCGIEPNQFA 303
            AQHG   EA+ +FE M+  GI PN+ +
Sbjct: 345 YAQHGFGKEAVWWFEEMRRVGIRPNEIS 365

[Close]
BLAST of Spg018563 vs. ExPASy Swiss-Prot
Match: P93005 (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.6e-12
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 0 

Query: 171 QVQNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEV 230
           Q ++V ++ +++ G +Q    E+     AL L+  MK+ GI  +  T +S+LKAC ++  
Sbjct: 384 QERDVALWTSLISGYVQNSDNEE-----ALILYRRMKTAGIIPNDPTMASVLKACSSLAT 443

Query: 231 FEFAKQ------------EWP----SIWMYAKSGDLYSANLTFQQTENPDVVSWSTMICS 290
            E  KQ            E P       MY+K G L   NL F++T N DVVSW+ MI  
Sbjct: 444 LELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISG 503

Query: 291 NAQHGHAMEALRFFELMKSCGIEPN 300
            + +G   EAL  FE M + G+EP+
Sbjct: 504 LSHNGQGDEALELFEEMLAEGMEPD 523

[Close]
BLAST of Spg018563 vs. ExPASy Swiss-Prot
Match: Q9LRV9 (Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E89 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-11
Identity = 44/147 (29.93%), Postives = 71/147 (48.30%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVV YNA++ G LQ ++I DE + +A  LF +M+  G++ S  T+S +LKAC   +  E
Sbjct: 316 KNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLE 375

Query: 233 FAKQ--------EWPS--------IWMYAKSGDLYSANLTFQQTENPDVVSWSTMICSNA 292
           + +Q         + S        I +YA  G        F  T   D+ SW++MI  + 
Sbjct: 376 YGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHV 435

Query: 293 QHGHAMEALRFFELMKSCGIEPNQFAL 304
           Q+     A   F  + S  I P ++ +
Sbjct: 436 QNEQLESAFDLFRQLFSSHIRPEEYTV 462

[Close]
BLAST of Spg018563 vs. ExPASy TrEMBL
Match: A0A6J1I7D1 (pentatricopeptide repeat-containing protein At3g13880 OS=Cucurbita maxima OX=3661 GN=LOC111471935 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.0e-44
Identity = 116/247 (46.96%), Postives = 122/247 (49.39%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQEKIED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE FE
Sbjct: 327 KNVVMYNAMMAGLLQQEKIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIAVEDFE 386

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 387 FAKQTHALICKNGLQSDEYIGSVLIDLYFLLGSIKDAFSCFNSIHNLTIVPITAMIVGYL 446

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 447 QKGEFERALALFYELLSSKEKPDEFILSTILSACANMGMLRSGEQIQGYANKIGISRYTI 506

[Close]
BLAST of Spg018563 vs. ExPASy TrEMBL
Match: A0A6J1EX55 (pentatricopeptide repeat-containing protein At3g13880 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111438902 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.0e-44
Identity = 116/247 (46.96%), Postives = 122/247 (49.39%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQEKIED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE FE
Sbjct: 183 KNVVMYNAMMAGLLQQEKIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIAVEDFE 242

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 243 FAKQIHALICKNGLQSDEYIGSVLIDLYFLLGSIKDAFSCFNSIHNLTIVPITAMIVGYL 302

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 303 QKGEFERALALFYELLASKEKPDEFILSTILSACANMGMLRSGEQIQGYANKIGISRYTI 362

[Close]
BLAST of Spg018563 vs. ExPASy TrEMBL
Match: A0A6J1F1V7 (pentatricopeptide repeat-containing protein At3g13880 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438902 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.0e-44
Identity = 116/247 (46.96%), Postives = 122/247 (49.39%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQEKIED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE FE
Sbjct: 327 KNVVMYNAMMAGLLQQEKIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIAVEDFE 386

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 387 FAKQIHALICKNGLQSDEYIGSVLIDLYFLLGSIKDAFSCFNSIHNLTIVPITAMIVGYL 446

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 447 QKGEFERALALFYELLASKEKPDEFILSTILSACANMGMLRSGEQIQGYANKIGISRYTI 506

[Close]
BLAST of Spg018563 vs. ExPASy TrEMBL
Match: A0A0A0KSU3 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G648690 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-43
Identity = 115/247 (46.56%), Postives = 121/247 (48.99%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQE IED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACI VE F+
Sbjct: 327 KNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFK 386

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 387 FAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYL 446

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 447 QNGEFESALSLFYELLTYEEKPDEFIFSTIMSSCANMGMLRSGEQIQGHATKVGISRFTI 506

[Close]
BLAST of Spg018563 vs. ExPASy TrEMBL
Match: A0A1S3CAH5 (pentatricopeptide repeat-containing protein At3g13880 OS=Cucumis melo OX=3656 GN=LOC103498661 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-42
Identity = 113/247 (45.75%), Postives = 120/247 (48.58%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVVMYNA+M GLLQQE IED+CAYKALNLFFEMKSCGIK SMFTYSSLLKACITV+ FE
Sbjct: 327 KNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACITVKDFE 386

Query: 233 FAKQ-------------------------------------------------------- 292
           FAKQ                                                        
Sbjct: 387 FAKQVHALMCKNGLLADEYIGSSLIDLYSLLGSMTDALSCFNSIHNLTIVPMTAMIFGYL 446

Query: 293 -------------------EWP-------------------------------------- 303
                              E P                                      
Sbjct: 447 QNGEFESALSLFYELLTYEEKPDEFILSTIMSSCANMGMLRSGEQIQGYATKTGISRFTI 506

[Close]
BLAST of Spg018563 vs. TAIR 10
Match: AT2G03880.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 9.9e-15
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 0 

Query: 174 NVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFEF 233
           + +++N+I+ G  Q  + +      AL LF  MK  G  A   T +S+L+AC  + + E 
Sbjct: 224 DAIVWNSIIGGFAQNSRSD-----VALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 283

Query: 234 AKQEWPSIW--------------MYAKSGDLYSANLTFQQTENPDVVSWSTMICSNAQHG 293
             Q    I               MY K G L  A   F Q +  DV++WSTMI   AQ+G
Sbjct: 284 GMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNG 343

Query: 294 HAMEALRFFELMKSCGIEPNQFAL 304
           ++ EAL+ FE MKS G +PN   +
Sbjct: 344 YSQEALKLFERMKSSGTKPNYITI 362

[Close]
BLAST of Spg018563 vs. TAIR 10
Match: AT5G13270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-13
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = 0 

Query: 174 NVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIK-ASMFTYSSLLKACITVEVFE 233
           N V ++AI+ G  Q  + E+     A+  F  ++S      + FTY+S+ +AC  +    
Sbjct: 350 NDVSWSAIISGYCQMSQFEE-----AVKTFKSLRSKNASILNSFTYTSIFQACSVLADCN 409

Query: 234 FAKQ----------------EWPSIWMYAKSGDLYSANLTFQQTENPDVVSWSTMICSNA 293
              Q                E   I MY+K G L  AN  F+  +NPD+V+W+  I  +A
Sbjct: 410 IGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHA 469

Query: 294 QHGHAMEALRFFELMKSCGIEPN 300
            +G+A EALR FE M SCG++PN
Sbjct: 470 YYGNASEALRLFEKMVSCGMKPN 487

[Close]
BLAST of Spg018563 vs. TAIR 10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-13
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +N V +NA++ G  ++   E     KAL LF  M   G + S F+Y+SL  AC +    E
Sbjct: 225 RNDVSWNALIAGHARRSGTE-----KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLE 284

Query: 233 FAKQEWPSIW------------------MYAKSGDLYSANLTFQQTENPDVVSWSTMICS 292
             K  W   +                  MYAKSG ++ A   F +    DVVSW++++ +
Sbjct: 285 QGK--WVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 344

Query: 293 NAQHGHAMEALRFFELMKSCGIEPNQFA 303
            AQHG   EA+ +FE M+  GI PN+ +
Sbjct: 345 YAQHGFGKEAVWWFEEMRRVGIRPNEIS 365

[Close]
BLAST of Spg018563 vs. TAIR 10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-13
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 0 

Query: 171 QVQNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEV 230
           Q ++V ++ +++ G +Q    E+     AL L+  MK+ GI  +  T +S+LKAC ++  
Sbjct: 384 QERDVALWTSLISGYVQNSDNEE-----ALILYRRMKTAGIIPNDPTMASVLKACSSLAT 443

Query: 231 FEFAKQ------------EWP----SIWMYAKSGDLYSANLTFQQTENPDVVSWSTMICS 290
            E  KQ            E P       MY+K G L   NL F++T N DVVSW+ MI  
Sbjct: 444 LELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISG 503

Query: 291 NAQHGHAMEALRFFELMKSCGIEPN 300
            + +G   EAL  FE M + G+EP+
Sbjct: 504 LSHNGQGDEALELFEEMLAEGMEPD 523

[Close]
BLAST of Spg018563 vs. TAIR 10
Match: AT3G13880.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 7.1e-13
Identity = 44/147 (29.93%), Postives = 71/147 (48.30%), Query Frame = 0 

Query: 173 QNVVMYNAIMVGLLQQEKIEDECAYKALNLFFEMKSCGIKASMFTYSSLLKACITVEVFE 232
           +NVV YNA++ G LQ ++I DE + +A  LF +M+  G++ S  T+S +LKAC   +  E
Sbjct: 316 KNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLE 375

Query: 233 FAKQ--------EWPS--------IWMYAKSGDLYSANLTFQQTENPDVVSWSTMICSNA 292
           + +Q         + S        I +YA  G        F  T   D+ SW++MI  + 
Sbjct: 376 YGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHV 435

Query: 293 QHGHAMEALRFFELMKSCGIEPNQFAL 304
           Q+     A   F  + S  I P ++ +
Sbjct: 436 QNEQLESAFDLFRQLFSSHIRPEEYTV 462

The following BLAST results are available for this feature:
BLAST of Spg018563 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023523805.11.2e-4346.96pentatricopeptide repeat-containing protein At3g13880 isoform X2 [Cucurbita pepo... [more]
XP_022932499.11.2e-4346.96pentatricopeptide repeat-containing protein At3g13880 isoform X2 [Cucurbita mosc... [more]
XP_023523804.11.2e-4346.96pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Cucurbita pepo... [more]
XP_022932498.11.2e-4346.96pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Cucurbita mosc... [more]
XP_022973377.11.2e-4346.96pentatricopeptide repeat-containing protein At3g13880 [Cucurbita maxima][more]
BLAST of Spg018563 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SI531.4e-1334.03Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop... [more]
Q9LYU91.5e-1233.57Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidop... [more]
Q9LIQ72.0e-1233.11Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop... [more]
P930057.6e-1234.48Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX... [more]
Q9LRV91.0e-1129.93Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana OX... [more]
BLAST of Spg018563 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I7D16.0e-4446.96pentatricopeptide repeat-containing protein At3g13880 OS=Cucurbita maxima OX=366... [more]
A0A6J1EX556.0e-4446.96pentatricopeptide repeat-containing protein At3g13880 isoform X2 OS=Cucurbita mo... [more]
A0A6J1F1V76.0e-4446.96pentatricopeptide repeat-containing protein At3g13880 isoform X1 OS=Cucurbita mo... [more]
A0A0A0KSU31.7e-4346.56DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6486... [more]
A0A1S3CAH51.9e-4245.75pentatricopeptide repeat-containing protein At3g13880 OS=Cucumis melo OX=3656 GN... [more]
BLAST of Spg018563 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G03880.19.9e-1534.03Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G13270.11.1e-1333.57Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G24000.11.4e-1333.11Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G33680.15.4e-1334.48Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G13880.17.1e-1329.93Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 240..304
e-value: 5.1E-11
score: 44.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 148..238
e-value: 6.4E-10
score: 41.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 266..299
e-value: 2.7E-6
score: 25.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 174..225
e-value: 1.2E-9
score: 38.3
coord: 263..301
e-value: 1.6E-7
score: 31.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 264..298
score: 11.334042
NoneNo IPR availablePANTHERPTHR24015:SF811OS01G0959600 PROTEINcoord: 240..303
coord: 134..236
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 240..303
coord: 134..236

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018563.1Spg018563.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding