Spg018480 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018480
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold3: 17963707 .. 17967991 (+)
RNA-Seq ExpressionSpg018480
SyntenySpg018480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGCTTCCGCATGTAGTATGTGTAATAAGAATGTTGAGACAATTGATCATGCACTTTGCGGATGTAAACGAGCCAAGGCCATCTGCGATCATATTTTCCAACGAATTGATGGTATTATTAGAGTGAATAATAATTTTGCTGATCATATTGTTTTCTTAGCAGCGAATCTGAACATCGAAGATTTTGAAAAGGCTTGTATTGCATTCTGGTCAATATGGAATAATAGAAATGCTTTCCATATGAACCAGCCGATTGCAGATTGGTAGCAGTAATGTGATTGGATATCTAAATACTGGGAGGAGACAACCAAAAGATGGAAGGAAAACGCTACATCGACTAACCTCATAGAGGTGCGTGGAGATGAAGTGTACGATGGGTGTTCAGGTATTTACTGATGCTGCGGTTTCTCCAAGTGGTGACGGTGCAGGATATGGTGTGGTTGTTGTTGGAAATGATTACAACGTTCGTGGAGCAATGGAAATGTTCGAAAACAAGGCTCTTTCACTGCTGGCAGTGGAGGTTCAAGCTATTTTACATAGCCTTAGATTGATGCAACGAATGCAAATCCAAGAAGTTCAAGTTTGTTCAGATTCTCTTAATGCGGTCCGAATGATTAACAAGGAGATTGATGTGAATCCGGATGTTGCCCATTGGATCGTGACTATCCAAGATATGTGCAAGAACTTCCAATCCTTTTCCTTTCATTATGTTTCTAGGAATAGAATTTAAGAGCTGATGCTTTAGCAAAACATGATTTAGCTAACAAAAGTACCATGTTGTGGATGTCTAATTTTCCACCATGGTTTTTGGATTTGGGTAATGATGCTTATTGCAAATGTATTTTGAATTGTACCTATTATAAGTAATGAAATTCCGTTTCTTGTGTCAGAAAAAAAAAATGGGGGCAAAAGAAGAATAAGAAAACCACAATGGGTAGAGAAGAGAAGAAAGTAGAGAGCAATGTGTAATTGTCATTCAACTCTTGAATTGATGTGTATACAAATGTTCTCTACAATCTCTATTTATAGGGTCGAGAATGTAGTTGTTACAAGATCTAACATAAATGAGATTTCTAATTCATGAGAGAATGATGGGAATTGCATGGGTGAATGAATATGGATACGTAACCTTTAGAGGTTATGGACATCTAATAGAATATTCCTAGCTAATTAGAATATTCACAAAAATTGGAAAATTATTTCCAAACATATCCAATTGAGCATACTATTCTTGATTTTTTTTTAATCTTTTTTGAGTTCTCATGTTCTTGATTATTACAATAGGACACTTTTTTTACATCAAAATTGTTGCTGAAAAATAAAATAAAATATTACTTGGGTAGCTCGTTCCAATGTTTTTTTTTTCAAATATCAATTTTAAGAAATGGCATGATAATTTTGACTCTGTTGAAGGAGAAATTTTTTCCAATCACAAATTGTCACGTCATTACACGAAATTAATGACGAAATTATAATTAATTAAATTTGGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGACGACAAAGTTGGCCAATTATAAATTTATAGAGCCAAATTTCTATTTGATCAATTAATTAAAAATAAATTATTTTGATCAGATTAATTAATTTGACCAATTAGTTAAAAAAATTAATTGGATCAAATTTAGGTCTTTTAAGTATTTGGGTCATATGGTTTTGGGTCAAATATAAACCAAACCCAAGACTAAATAGTTGAGCCCAAGACCAATAAAGTCCAAGCCCAAGTTGTTAGGCCCAAAAGTCACCAGGACCCATCCAGCGAGAAATCTATAAATAGCAGGGTTCTCCTCCATTTCAAGTGGTCAAAATTTTGAAGCTCCAAACCAGAGTCAGAGAATTCAGAGAAAACTCCATCAAGGTTGAAGACCGAAGACTGAAGACTCCCTAAAATCCATAAGTTTCAAAGTGTTGAACACCTCTCAAACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATTCACACACAAGAGAGAATTAAAGGATTAACATTAGAGATTGTATACCCACACACATACAAACATTAATACAAATATACATTTATTCCACGTGTCCCCATCCCTGAAGTTACGTGTGAACAAATTGACACGCCCAGTGGGACAATCTTTACCTCTCATCTCTTTTTCTTGTTAAAAGATCCAACCAACGTGATGACACCAAAGAAAGCTCCCGCGAAGGTTACAACATCAAGCGACTCTTACACAGGTCCTGTCACTCGTAGTCCTTCCCAAGGAATTGAGATCAAGGAAGATCATACTCCTCTCGCTGTTGCAAGTAGGATCTCAAAATTGATTGAAGAATCCTCTAAGGAAAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTATCACTTCAACATCTGAGCAGCCAAAGGATACACTAAAACCTCATGTGATGCCTGTCATGATGGTTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCCTAATGAAGACAGTTGATGAAAGAGATCATGAGATTGCCTATTTAAAGAACCAGCTACAAAATCGAGAGATTGCTGAATCTAGCCAGACCCCTACTGTAGGAAAAAATGATAAGGGGAAGGCTATCGTCCATGAGGACCAGCCACAACACTCGGCGTCAGTTGCCTCTCTATCTTTCCAACAACTACAGGACATGATCATGAATTCCATCAGGGCTCAATATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCCAAACCTTAAACAAAGAGGATTGACAATTTGAGAATGCCCGCTGGGTATCAGCCTCTCAAGTTCCAACATTTTGATGGAAAGGGCAATCCAAAACAACACATCACCCACTTCGTTGAAACCTGCGAGAATGCTAGAACTCGGGGAGACTTGCTTGTAAAACAGTCTGTCCAAACACTGAAAGGAAATGCGTTCGATTGGTACACGGACTTGGAGCCTGAGACAATTGATAGATGGGAACAGATTGAGAGAGAGTTTCTGAATCGCTTCTACAGTACGAGGCGAACAGTTAGTATGACGGAACTCACGAACACAAAGCAACGAAAGGGTGAGCCAGTCATTGACTACATCAACCGTTGGAGAGCCTTGAGTCTCGACTGTAAAGATAGACTCTCTGAGGTGTCCTCTGTTGAGATGTGCACCCAAGGCATGCACTGGGGACTTCTTTACATCTTGCAGGGGATAAAACCCCGAACCTTTGAAGAATTAGCGACTCGTGCCCATGATATGAAGTTGAGCATCGCTAGTAGAGGGAGCAAAGATCACGTAGTCCCAGACATGAGGAAAGAAAAGAAGGAAGTCAAAGGCACTGAGAAAGTTACGAAGAGTGCCACGAAAGAATCCATGGTCGTCAACACGACCCCTGTAAAACTTTCCTCCAAAGGAAAGGAAAGCAAAATAGATAAGCGAACGGAGACAGGCGAGAGACGTTGCCTAACTTTAAAAGAGAGACAAGAAAAGGTGTATCAGTTTCCAGACTTCGACGTCCCAGATATGTTGGAACAACTGTTAGAGAAGCAATTAATTGAACTCCTCGAATGAAAACGACCGAAAGAGTTAAGGAAAGTCAATGATCCTAACTACTGCAAGTATCACCAAGTCGTTAGCGACCTGGTGGAGAAATGTTTTGTATTGAAGGAGCTAATCCTTAAGTTGGCTCGTGAAAAGAGAATTGAATTAGACCTTGATGAGGTGGCTCAGGCGAATCATGCAACAATAGCGACAAATGTAAGGGATCAACTTCCCTTAATCTCCTTATGTGATCATGAAGAAAGGATGATTCAATTTGGGACCCTTGAGCCCATAGTTGTTCGATTCTGAAAAGAAGCCACAATGAAGGGATCCTAAGAAAAATATGATTCCACCGAAGACGAGAACGAAGGTTGGACCATTGTCGTTCGTCGCAAAAAGCGAAAACAAAGTTGCGCACGGAAGGAGTCCCACCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAAGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTTGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAATGACTTATTGCCACTTCCTTAG

mRNA sequence

ATGGATGTGCTTCCGCATGTAGTATGTGTAATAAGAATGTTGAGACAATTGATCATGCACTTTGCGGATGTAAACGAGCCAAGGCCATCTGCGATCATATTTTCCAACGAATTGATGGTATTTACTGATGCTGCGGTTTCTCCAAGTGGTGACGGTGCAGGATATGGTGTGGTTGTTGTTGGAAATGATTACAACGTTCGTGGAGCAATGGAAATGTTCGAAAACAAGGCTCTTTCACTGCTGGCAGTGGAGGTTCAAGCTATTTTACATAGCCTTAGATTGATGCAACGAATGCAAATCCAAGAAGTTCAAGTTTGTTCAGATTCTCTTAATGCGGTCCGAATGATTAACAAGGAGATTGATGTGAATCCGGATGTTGCCCATTGGATCATCAAGGAAGATCATACTCCTCTCGCTGTTGCAAGTAGGATCTCAAAATTGATTGAAGAATCCTCTAAGGAAAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTATCACTTCAACATCTGAGCAGCCAAAGGATACACTAAAACCTCATGTGATGCCTGTCATGATGCGAAAACAAAGTTGCGCACGGAAGGAGTCCCACCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAAGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTTGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAATGACTTATTGCCACTTCCTTAG

Coding sequence (CDS)

ATGGATGTGCTTCCGCATGTAGTATGTGTAATAAGAATGTTGAGACAATTGATCATGCACTTTGCGGATGTAAACGAGCCAAGGCCATCTGCGATCATATTTTCCAACGAATTGATGGTATTTACTGATGCTGCGGTTTCTCCAAGTGGTGACGGTGCAGGATATGGTGTGGTTGTTGTTGGAAATGATTACAACGTTCGTGGAGCAATGGAAATGTTCGAAAACAAGGCTCTTTCACTGCTGGCAGTGGAGGTTCAAGCTATTTTACATAGCCTTAGATTGATGCAACGAATGCAAATCCAAGAAGTTCAAGTTTGTTCAGATTCTCTTAATGCGGTCCGAATGATTAACAAGGAGATTGATGTGAATCCGGATGTTGCCCATTGGATCATCAAGGAAGATCATACTCCTCTCGCTGTTGCAAGTAGGATCTCAAAATTGATTGAAGAATCCTCTAAGGAAAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTATCACTTCAACATCTGAGCAGCCAAAGGATACACTAAAACCTCATGTGATGCCTGTCATGATGCGAAAACAAAGTTGCGCACGGAAGGAGTCCCACCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAAGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTTGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAATGACTTATTGCCACTTCCTTAG

Protein sequence

MDVLPHVVCVIRMLRQLIMHFADVNEPRPSAIIFSNELMVFTDAAVSPSGDGAGYGVVVVGNDYNVRGAMEMFENKALSLLAVEVQAILHSLRLMQRMQIQEVQVCSDSLNAVRMINKEIDVNPDVAHWIIKEDHTPLAVASRISKLIEESSKEKVAVKDNPLFESITSTSEQPKDTLKPHVMPVMMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP
Homology
[Close]
BLAST of Spg018480 vs. NCBI nr
Match: KAA0046265.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18936.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 8.5e-13
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 0 

Query: 186 MMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFP 245
           M RK +  +KES  +R+ +R+ K+QK K KKK+R+ K V EE +DF  P + +T+A+ FP
Sbjct: 176 MKRKSTLTQKESSFYRNYRRRNKAQKNKKKKKTRKPKLVHEEDKDFPQPQRLVTMADLFP 235

Query: 246 RRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP 300
            RFL D Q E  E +TCH ++  E++ +P+ S        +LS F+++DLL LP
Sbjct: 236 TRFLCDHQDENPEVITCHTINATEEESIPSRSLEEEGMSKNLSRFNMDDLLSLP 289

[Close]
BLAST of Spg018480 vs. NCBI nr
Match: KAA0031665.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04446.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 8.0e-11
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 0 

Query: 188 RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRR 247
           RK +   KES  +R+ +R  K+QK K KKK+R+ K V EE +DF  P + +TLA++FP R
Sbjct: 215 RKSTLIEKESCFYRNYRRGNKAQKNKKKKKTRKLKLVHEEDKDFPRPQRLVTLADFFPTR 274

Query: 248 FLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP 300
           FL D Q E    V CH ++V+E++ +P  S         LS F+++DLL LP
Sbjct: 275 FLCDHQDENPGVVACHAINVMEEESIPLRSLEEEEVSKYLSRFNVDDLLSLP 326

[Close]
BLAST of Spg018480 vs. NCBI nr
Match: KAA0039557.1 (uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK01742.1 uncharacterized protein E5676_scaffold775G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-10
Identity = 58/189 (30.69%), Postives = 95/189 (50.26%), Query Frame = 0 

Query: 118 KEIDVNPDVAHWIIKEDHTPLAVASRISKLIEESSKEKVAVKDNPLFESITSTSEQPKDT 177
           +E+      A  I+ E  +P  +  +   L++  + E V V+     + +     Q K+ 
Sbjct: 65  EEVAQTNHAAAMIMSEALSPRLIFEQRESLLQFGTFEPVVVR---FHQEVAPEDSQEKER 124

Query: 178 LKPH-------VMPVMMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESED 237
           L          V     RK +  +KE   +R+ ++  K+QK K KKK+R+ K + EE +D
Sbjct: 125 LIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLMHEEDKD 184

Query: 238 FFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSF 297
           F    + +TLA++FP RFL D Q E    V CH ++ +E++++P  S        DLS F
Sbjct: 185 FPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVSKDLSRF 244

Query: 298 SINDLLPLP 300
           ++NDLL LP
Sbjct: 245 NVNDLLSLP 250

[Close]
BLAST of Spg018480 vs. NCBI nr
Match: KAA0032810.1 (uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa] >TYK30368.1 uncharacterized protein E5676_scaffold575G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-10
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 0 

Query: 188 RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRR 247
           RK +  +KES  +R+ +R  K+QK K KKK+R+ K V EE +DF    + +TLA++FP R
Sbjct: 151 RKSTPNQKESRFYRNYRRGNKAQKNKKKKKTRKLKLVHEEDKDFPRTQRLVTLADFFPTR 210

Query: 248 FLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP 300
           FL D Q E    + CH ++  E++ +P  S        DLS F+++DLL LP
Sbjct: 211 FLGDHQDENPGVIACHAINATEEESIPLRSLKEEEVSKDLSRFNVDDLLSLP 262

[Close]
BLAST of Spg018480 vs. NCBI nr
Match: KAA0056780.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97603.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-10
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 0 

Query: 188 RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRR 247
           RK +  +KE   +R+ +R  K+QK K KKK+++ K + EE +DF    + +TLA +FP R
Sbjct: 115 RKSTLIQKEPRFYRNYRRGNKTQKNKKKKKTQKLKLINEEDKDFPRTQRLVTLANFFPTR 174

Query: 248 FLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP 300
           FL D Q E  E V CH +D +E++ +P  S        DL  F+++DLL LP
Sbjct: 175 FLCDHQDENPEVVACHAIDAIEEESIPLRSLEEEGVSKDLLRFNVDDLLSLP 226

[Close]
BLAST of Spg018480 vs. ExPASy TrEMBL
Match: A0A5A7TY01 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00180 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-13
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 0 

Query: 186 MMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFP 245
           M RK +  +KES  +R+ +R+ K+QK K KKK+R+ K V EE +DF  P + +T+A+ FP
Sbjct: 176 MKRKSTLTQKESSFYRNYRRRNKAQKNKKKKKTRKPKLVHEEDKDFPQPQRLVTMADLFP 235

Query: 246 RRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP 300
            RFL D Q E  E +TCH ++  E++ +P+ S        +LS F+++DLL LP
Sbjct: 236 TRFLCDHQDENPEVITCHTINATEEESIPSRSLEEEGMSKNLSRFNMDDLLSLP 289

[Close]
BLAST of Spg018480 vs. ExPASy TrEMBL
Match: A0A5A7SRA6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00450 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-11
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 0 

Query: 188 RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRR 247
           RK +   KES  +R+ +R  K+QK K KKK+R+ K V EE +DF  P + +TLA++FP R
Sbjct: 215 RKSTLIEKESCFYRNYRRGNKAQKNKKKKKTRKLKLVHEEDKDFPRPQRLVTLADFFPTR 274

Query: 248 FLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP 300
           FL D Q E    V CH ++V+E++ +P  S         LS F+++DLL LP
Sbjct: 275 FLCDHQDENPGVVACHAINVMEEESIPLRSLEEEEVSKYLSRFNVDDLLSLP 326

[Close]
BLAST of Spg018480 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 58/189 (30.69%), Postives = 95/189 (50.26%), Query Frame = 0 

Query: 118 KEIDVNPDVAHWIIKEDHTPLAVASRISKLIEESSKEKVAVKDNPLFESITSTSEQPKDT 177
           +E+      A  I+ E  +P  +  +   L++  + E V V+     + +     Q K+ 
Sbjct: 65  EEVAQTNHAAAMIMSEALSPRLIFEQRESLLQFGTFEPVVVR---FHQEVAPEDSQEKER 124

Query: 178 LKPH-------VMPVMMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESED 237
           L          V     RK +  +KE   +R+ ++  K+QK K KKK+R+ K + EE +D
Sbjct: 125 LIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLMHEEDKD 184

Query: 238 FFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSF 297
           F    + +TLA++FP RFL D Q E    V CH ++ +E++++P  S        DLS F
Sbjct: 185 FPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVSKDLSRF 244

Query: 298 SINDLLPLP 300
           ++NDLL LP
Sbjct: 245 NVNDLLSLP 250

[Close]
BLAST of Spg018480 vs. ExPASy TrEMBL
Match: A0A5D3E3J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00350 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-11
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 0 

Query: 188 RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRR 247
           RK +  +KES  +R+ +R  K+QK K KKK+R+ K V EE +DF    + +TLA++FP R
Sbjct: 151 RKSTPNQKESRFYRNYRRGNKAQKNKKKKKTRKLKLVHEEDKDFPRTQRLVTLADFFPTR 210

Query: 248 FLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP 300
           FL D Q E    + CH ++  E++ +P  S        DLS F+++DLL LP
Sbjct: 211 FLGDHQDENPGVIACHAINATEEESIPLRSLKEEEVSKDLSRFNVDDLLSLP 262

[Close]
BLAST of Spg018480 vs. ExPASy TrEMBL
Match: A0A5D3BE72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00360 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-11
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 0 

Query: 188 RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRR 247
           RK +  +KE   +R+ +R  K+QK K KKK+++ K + EE +DF    + +TLA +FP R
Sbjct: 115 RKSTLIQKEPRFYRNYRRGNKTQKNKKKKKTQKLKLINEEDKDFPRTQRLVTLANFFPTR 174

Query: 248 FLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP 300
           FL D Q E  E V CH +D +E++ +P  S        DL  F+++DLL LP
Sbjct: 175 FLCDHQDENPEVVACHAIDAIEEESIPLRSLEEEGVSKDLLRFNVDDLLSLP 226

The following BLAST results are available for this feature:
BLAST of Spg018480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046265.18.5e-1342.11ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18936.1 ty3-gyp... [more]
KAA0031665.18.0e-1142.86ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04446.1 ty3-gyp... [more]
KAA0039557.11.0e-1030.69uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0032810.11.4e-1041.07uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa] >TYK3... [more]
KAA0056780.11.4e-1040.18ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97603.1 ty3-gyp... [more]
BLAST of Spg018480 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TY014.1e-1342.11Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SRA63.8e-1142.86Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BSG55.0e-1130.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3J46.6e-1141.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BE726.6e-1140.18Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Spg018480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 43..129
e-value: 5.7E-6
score: 26.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 36..163
e-value: 2.0E-11
score: 46.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 273..299
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 38..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018480.1Spg018480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity