Spg018471 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018471
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUbiquitin-like-specific protease ESD4 isoform X2
Locationscaffold3: 11753742 .. 11754678 (-)
RNA-Seq ExpressionSpg018471
SyntenySpg018471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGTAAATGAGAGACTTCCAGCAAAAGTAGAAGAAGAGACTGCAAAACAATCTCAAGAATCTTTACACAAGAAGCATGCTCCTTCTATCAGCCTTGAAATTGTTGAAGCGAAAGCAGCACGTATAAATGTAGATAAGATGGTTGATTATTTAACCACTTATGCTGAGAAAGAGGTAAAATTACCTTATGTTCTTTTATACTTTTTCTTTTATCAACATTTATATTTTCTTTACATTGAATGACAGGCCAATGAAAATGAAGTTGAAGTTCGAATGGAGAATGAAAAGGAAACAAAAGAAGATGGAGAAAATGATAAAAGGCTAGAGGAGGAAAATCAGAAAGAAGATGATAGAAGGCCAGAAGATGAAGAAAATGGGGAAAACATGATGAAAAAAAGCATGATCTGAAAGGGAAAAAGGTAAGTACTTTTATAGAATCAAAGTCTATCAAGTGATAGACTCCGATTAATTGAATTCTATCATTGACTATCACCGATAGAATCTGATTAATCGAAGTATATCGGTGTCTAGTCTATCAGGATTCAATTATTAAGTCTATCGGTGACTGTTCAACTAATGACATATATTAATGTGTGTTTAGGTGAGTACTTCTTTACTTTTACATATTAGCATTCAATGTCTATCAGTGATGGAAAATCAACTAAATGCATTTAATGTGTGTTTTCAGGTTGTTGGAACACCTAAAAAATATAGACCCAAGGTCAAAAAAGACCCACCTCAAGAGGAGAATGTTGTTGTTGTGATCGAGAATGGGAGACCAAAAAGGCAACCAAAGCCAACAAAAAAAGTCTTGGAGAACACAAAGGGGCAAAAGAAAGATACGAAAGCTGACAAAGAATCTCCAAAAAGATCTTCTCCAAGATTCAAAAACAATGCTCCCAGTTTTGATCTAAAAATGTCTCTAGAATGA

mRNA sequence

ATGGAAATGGTAAATGAGAGACTTCCAGCAAAAGTAGAAGAAGAGACTGCAAAACAATCTCAAGAATCTTTACACAAGAAGCATGCTCCTTCTATCAGCCTTGAAATTGTTGAAGCGAAAGCAGCACGTATAAATGTAGATAAGATGGTTGATTATTTAACCACTTATGCTGAGAAAGAGGTTGTTGGAACACCTAAAAAATATAGACCCAAGGTCAAAAAAGACCCACCTCAAGAGGAGAATGTTGTTGTTGTGATCGAGAATGGGAGACCAAAAAGGCAACCAAAGCCAACAAAAAAAGTCTTGGAGAACACAAAGGGGCAAAAGAAAGATACGAAAGCTGACAAAGAATCTCCAAAAAGATCTTCTCCAAGATTCAAAAACAATGCTCCCAGTTTTGATCTAAAAATGTCTCTAGAATGA

Coding sequence (CDS)

ATGGAAATGGTAAATGAGAGACTTCCAGCAAAAGTAGAAGAAGAGACTGCAAAACAATCTCAAGAATCTTTACACAAGAAGCATGCTCCTTCTATCAGCCTTGAAATTGTTGAAGCGAAAGCAGCACGTATAAATGTAGATAAGATGGTTGATTATTTAACCACTTATGCTGAGAAAGAGGTTGTTGGAACACCTAAAAAATATAGACCCAAGGTCAAAAAAGACCCACCTCAAGAGGAGAATGTTGTTGTTGTGATCGAGAATGGGAGACCAAAAAGGCAACCAAAGCCAACAAAAAAAGTCTTGGAGAACACAAAGGGGCAAAAGAAAGATACGAAAGCTGACAAAGAATCTCCAAAAAGATCTTCTCCAAGATTCAAAAACAATGCTCCCAGTTTTGATCTAAAAATGTCTCTAGAATGA

Protein sequence

MEMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEAKAARINVDKMVDYLTTYAEKEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQKKDTKADKESPKRSSPRFKNNAPSFDLKMSLE
Homology
BLAST of Spg018471 vs. NCBI nr
Match: KAA0067348.1 (ubiquitin-like-specific protease ESD4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 64/139 (46.04%), Postives = 80/139 (57.55%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEAKAARINVDKMVDYLTTYAEKEV 61
           E+VN+RL  K E E  KQSQE L K   P ISLE+++A     +VDK         EKEV
Sbjct: 166 EVVNQRLSHKCESE--KQSQEPLEKNPPPPISLEMIDA-----DVDK---------EKEV 225

Query: 62  VGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTKADKESP 121
           V   +K + K+ +       +   IE  RPKRQPKP+KKVLEN K QK  +  K D   P
Sbjct: 226 V--QEKAKVKIME-------IATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKP 279

Query: 122 KRSSPRFKNNAPSFDLKMS 139
            R SPR K+ APSF L++S
Sbjct: 286 TRHSPRIKDLAPSFALQIS 279

BLAST of Spg018471 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 62/145 (42.76%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEA---KAARINVDKMVDYLTTYAE 61
           E+VN+RL  K E E  KQSQE L K   P ISLE+++A   K   I  ++  +    + E
Sbjct: 194 EVVNQRLSHKCESE--KQSQEPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRE 253

Query: 62  ---KEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTK 121
              K V  T  K +   +K   +   +   IE  RPKRQPKP+KKVLEN K QK  +  K
Sbjct: 254 NKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKK 313

Query: 122 ADKESPKRSSPRFKNNAPSFDLKMS 139
            D   P R SPR ++ APSFDL++S
Sbjct: 314 NDSPKPTRYSPRIRDLAPSFDLQIS 336

BLAST of Spg018471 vs. NCBI nr
Match: TYK22453.1 (uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 62/145 (42.76%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEA---KAARINVDKMVDYLTTYAE 61
           E+VN+RL  K E E  KQSQE L K   P ISLE+++A   K   I  ++  +    + E
Sbjct: 194 EVVNQRLSHKCESE--KQSQEPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRE 253

Query: 62  ---KEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTK 121
              K V  T  K +   +K   +   +   IE  RPKRQPKP+KKVLEN K QK  +  K
Sbjct: 254 NKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKK 313

Query: 122 ADKESPKRSSPRFKNNAPSFDLKMS 139
            D   P R SPR ++ APSFDL++S
Sbjct: 314 NDSPKPTRYSPRIRDLAPSFDLQIS 336

BLAST of Spg018471 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.9e-09
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEA---KAARINVDKMVDYLTTYAE 61
           E+VN+RL  K E E  KQSQ+ L K   P ISLE+++A   K   I  ++  +    + E
Sbjct: 70  EVVNQRLSHKCESE--KQSQKPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRE 129

Query: 62  ---KEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTK 121
              K V  T  K +   +K   +   +   IE  RPKRQPKP+KKVLEN K QK  +  K
Sbjct: 130 NKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKK 189

Query: 122 ADKESPKRSSPRFKNNAPSFDLKMS 139
            D   P R SPR ++ APSFDL++S
Sbjct: 190 NDSPKPTRYSPRIRDLAPSFDLQIS 212

BLAST of Spg018471 vs. NCBI nr
Match: KAA0065297.1 (hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 7.8e-09
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEA---KAARINVDKMVDYLTTYAE 61
           E+VN+RL  K E E  KQSQE L K   P ISLE+++A   K   I  ++  +    + E
Sbjct: 70  EVVNQRLSHKCESE--KQSQEPLVKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRE 129

Query: 62  ---KEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTK 121
              K V  T  K +   +K   +   +   IE  RPKRQPKP+KKVLEN K QK  +  K
Sbjct: 130 NKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKK 189

Query: 122 ADKESPKRSSPRFKNNAPSFDLKMS 139
            D   P + SPR ++ APSFDL++S
Sbjct: 190 NDSPKPTKHSPRIRDLAPSFDLQIS 212

BLAST of Spg018471 vs. ExPASy TrEMBL
Match: A0A5A7VHY6 (Ubiquitin-like-specific protease ESD4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold179G00590 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.6e-10
Identity = 64/139 (46.04%), Postives = 80/139 (57.55%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEAKAARINVDKMVDYLTTYAEKEV 61
           E+VN+RL  K E E  KQSQE L K   P ISLE+++A     +VDK         EKEV
Sbjct: 166 EVVNQRLSHKCESE--KQSQEPLEKNPPPPISLEMIDA-----DVDK---------EKEV 225

Query: 62  VGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTKADKESP 121
           V   +K + K+ +       +   IE  RPKRQPKP+KKVLEN K QK  +  K D   P
Sbjct: 226 V--QEKAKVKIME-------IATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKP 279

Query: 122 KRSSPRFKNNAPSFDLKMS 139
            R SPR K+ APSF L++S
Sbjct: 286 TRHSPRIKDLAPSFALQIS 279

BLAST of Spg018471 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.9e-10
Identity = 62/145 (42.76%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEA---KAARINVDKMVDYLTTYAE 61
           E+VN+RL  K E E  KQSQE L K   P ISLE+++A   K   I  ++  +    + E
Sbjct: 194 EVVNQRLSHKCESE--KQSQEPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRE 253

Query: 62  ---KEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTK 121
              K V  T  K +   +K   +   +   IE  RPKRQPKP+KKVLEN K QK  +  K
Sbjct: 254 NKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKK 313

Query: 122 ADKESPKRSSPRFKNNAPSFDLKMS 139
            D   P R SPR ++ APSFDL++S
Sbjct: 314 NDSPKPTRYSPRIRDLAPSFDLQIS 336

BLAST of Spg018471 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.9e-10
Identity = 62/145 (42.76%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEA---KAARINVDKMVDYLTTYAE 61
           E+VN+RL  K E E  KQSQE L K   P ISLE+++A   K   I  ++  +    + E
Sbjct: 194 EVVNQRLSHKCESE--KQSQEPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRE 253

Query: 62  ---KEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTK 121
              K V  T  K +   +K   +   +   IE  RPKRQPKP+KKVLEN K QK  +  K
Sbjct: 254 NKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKK 313

Query: 122 ADKESPKRSSPRFKNNAPSFDLKMS 139
            D   P R SPR ++ APSFDL++S
Sbjct: 314 NDSPKPTRYSPRIRDLAPSFDLQIS 336

BLAST of Spg018471 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEA---KAARINVDKMVDYLTTYAE 61
           E+VN+RL  K E E  KQSQ+ L K   P ISLE+++A   K   I  ++  +    + E
Sbjct: 70  EVVNQRLSHKCESE--KQSQKPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRE 129

Query: 62  ---KEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTK 121
              K V  T  K +   +K   +   +   IE  RPKRQPKP+KKVLEN K QK  +  K
Sbjct: 130 NKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKK 189

Query: 122 ADKESPKRSSPRFKNNAPSFDLKMS 139
            D   P R SPR ++ APSFDL++S
Sbjct: 190 NDSPKPTRYSPRIRDLAPSFDLQIS 212

BLAST of Spg018471 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-09
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   EMVNERLPAKVEEETAKQSQESLHKKHAPSISLEIVEA---KAARINVDKMVDYLTTYAE 61
           E+VN+RL  K E E  KQSQE L K   P ISLE+++A   K   I  ++  +    + E
Sbjct: 70  EVVNQRLSHKCESE--KQSQEPLVKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRE 129

Query: 62  ---KEVVGTPKKYRPKVKKDPPQEENVVVVIENGRPKRQPKPTKKVLENTKGQK--KDTK 121
              K V  T  K +   +K   +   +   IE  RPKRQPKP+KKVLEN K QK  +  K
Sbjct: 130 NKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKK 189

Query: 122 ADKESPKRSSPRFKNNAPSFDLKMS 139
            D   P + SPR ++ APSFDL++S
Sbjct: 190 NDSPKPTKHSPRIRDLAPSFDLQIS 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067348.11.6e-0946.04ubiquitin-like-specific protease ESD4 isoform X2 [Cucumis melo var. makuwa][more]
KAA0031317.12.0e-0942.76uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0... [more]
TYK22453.12.0e-0942.76uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa][more]
TYK15261.15.9e-0942.07hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa][more]
KAA0065297.17.8e-0942.07hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VHY67.6e-1046.04Ubiquitin-like-specific protease ESD4 isoform X2 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7VIA99.9e-1042.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DFX69.9e-1042.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CTS82.9e-0942.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VDY13.8e-0942.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018471.1Spg018471.1mRNA