Spg018466 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018466
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold3: 13947521 .. 13953846 (+)
RNA-Seq ExpressionSpg018466
SyntenySpg018466
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCTGCTCTCTCTATGGCACGAGAGGGACTTCTGTTTGCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTAGCCTAGGGGTAAAACGGTAATTTGACCTATTTGGGGTACGAACACACGTGAAGGGCTGACTTGCTGCTGATGGTCGATATCCGTGGACACAAAAATATATCTGCAGTGTGAAGAGTGCAACTGTGGTTCTATAGTGGAGTGAACCATAATTAACGAACATTGATTAACTTGCCTAATGAGTTTAGCCAATTAATCTCATATCGTTGGAGCTTCTAATCTGTAGGTCCATGAGGTCCTACTGGTAGCTCATTTAGGGTGTTGAGGTAAATTTCTAAGGGAGAATTGAATATTCGAAGGGGTTCGAATATTAAGTTTAAAATATGAATTTGATTCATATTAAAACTATAGGTTATAATTAATGTGCATTAGAAGTGCATTAATACTATAGTTTATATGAGAGAAATATAATTAAATATTTGATATTTAATTACAATATTAATTAACTATTGTTTTAATTTAATTTAATTAAAATTTGATTTAATTGAATTACATTAAAACTATAGGGTAAGTGGAATATTTGTATAAATATGTTTATATGAATGAAATTAAATTAAATTAGATGTTAATTTAATTAAAAGATTAATTAATAATATTAATTAATAATTAATTAATTTTTCCATCAGTTAGGTTAACTGATGGAAACGTGGTCTTCCAGTTTTTCCTGGCATTGCGTGAATTGAGAGAGATTATTAAGTGGAGTTGGTTTTTCATCTGTAACTTCAGTTCTTCAGTTTTGACCATAATCTCTCAAGGGCTCTCACGCAACTCTCTCTCTCTCTCTCAACCTTTCTCTACGTTTCCATTGATCACAAAGAATAGAAAATACTCCAAAACCCTTAGAAATCCTTGCTCCCACAAGCTTCCTCATCCTAGTACCCAAGGAGAATAACGGTGCAACTCTATTGGTGGTGTTTGCAGAAAATTCCAGCAAGAAGGATCACAATAGCTTGTTGTTTTTCTGATATTTGGCAAGGAATTTGGAGATTTTCAATCAAGAACATTTACGCAAGTGAGTAATTCGATTCTTGATGAATATGGTTTATTTATCTAGATTAGATCTAGGTTTGTTTTCTATTTTAGCATGTTTTAGATAGTTTTTCCAACGAGTTTTATGTATGATTTTATTGCTGTGAAATAATTGCCAATGTATCAGTATTTCGCTCGTTGTTTAAAACTGAGATTGGTCCTTGAAGTTTTCCGCTGCGCTAGGGCTTTTATCCCTACAATTGGTATTAGAGCCATCTCAGTATTTTTAAACTTCGTTTTGGAATTTTCGTTTGGCTTGTAGGTGGGATTTGTTTTGCATTATGAATGTAAATTGGCATTGAACTAGTTAGGTTTAATTGGCCTTAGATTTATATTATTTTACTGATTTGATCATGTAAAGCCCTTGCGTTTTTGGGCAATAATGTATAAATCGAGTCTGTATAGTCCGGGTCAAGAATAGGCTTGAAGATCGTTGAAAATCGCAAAAGAAATCGGTCATTTACGTTCTGTACAGTTGCGATTTTGCCCAGAAAACAGCTCCAGACGCAACAGCGTCGGGACGCTTATCACCGCGTGTCTCGACGCTGTCGTGATTTCACGCTACGGACGCTTGAAATCGAGCCAGCGTCGGGACGTTGTTCCTTAAGTGTCTCGACGTTGTCGCGATTTCGTGCAACGGTTAGTTTTACGTGGAGACGTGAGTTGAAGCCCTAATTGCTTGAGTTGGGACCGGTTTGGTCCGGTTCAACCAGGGTTTGATGCGGTTCAAGGTTTTCAAGGCCGGTTCGAAGCGGTTCGGGTCGGTTTGTAGATTCTGGTCTGGTTTTGGAGCTGCAAATTTATGTAATAGGATAGATTATAAGCTTTATTAGTGTAATTTTGCTTTAATTTATCCTAGGGGCCAATTAAATCGATTCAATTGCTATTTAAATGCTTTATGGATGTCATTTAGATTTAAAATCCCACCTTAGGTTATAAAGCATGCTCATGCATTATGTATGTTATACTTAGATTATAATGTATGATTTATAATGCATGGATTTATTTTCATGAGATGTTTGATATATAGTTGAGTTATATTAAAATCATGAAAATGGAAAAGCATGATGCATGCAATTACCTAGTTAAATATAAGTTGTTATATTTAATAAAATTGTTTGTAGCATACTACTTTGATTTACCATGATTGGCAATAATTTAATTGTTAATTTATTAATAATGGAAATCAAAGTTGCATTGAGTATGAAACATCCATAGTTTAATATAATTGTTAAATTAAAATTCACGCAATGCAGAGATGTATAGTTTTATTTTTAATTAACTTGAATATGATTGTTAATTGCTTTAAAACTATAGTATGCATGATTATAGAGCTAATAATTAAAATTTGAATAGTTTAAAATTAATGATTAGAAATCGTCAATCTATAATCAAGATATGCATGCTCACATAGGACCATAGGTTAAGATTCATTAATTTTAATGAGTTAAAATTCATTAGACCTAAGGTCACATTCTAATAGAATTATAATAATTCTTACTTAGTTTAAAATAGTTTTATTGAACTAATTAGGACCAACATTCCTGTGATTATAAGGGAACTCTACCAGTGATGTTTTGTCTAAGGATTGGGGGTATTTAAGTTGACGGTATACGGAACACCTCCTACCTGGGAACTGATCTGGATCACCGGAGTTGAATTAATCATAGGTTAATGTTAGAATAATGTCGCTAGGTTTATTAAATATGTTTAATGCACCTAGACATTAGATCTTATTATAATAGTTATAATAGGACTAGACTTAGATAAATGACTTAGCCGAATTTATCTAGGTTTAATCAAACCCTAAAATATATGATAGGTTACTTTAGTGGGAGGAAAATTACAAAACTTGATTTAAATCGAGTTTTGCTCCTACGTCCCTATATTCACAACGTGAGATCCATGCTCGGCTTCGTGTTGTTTTAGCGCGGCCTCCCTTCGGAAAGTGTTTGCATGGATCAATAATAAGGTGAATGGGGAAAGTGACCATAGTAAGTGGGAGCAGGACGCGTGTCAATGTATCCCTCGGTCTCCACCCCTAGGTCACAACGTGAGATTCCTATGATCCGCCTGCGTGTTGCCCTAGAGCAACCACCCTTTCGGAGGGCCTGATCATAGGATTCGGAACACCGTGATCATAGGATTAGGCTAATTACCAACAATTGTCTTTCCTAACGATAACCTGTTGGTTCGTGTCTTTGAGATCTGAAAGTGGGAGGGTTACACTTACAGAGATGAGTTAATTTGTTAACAAATCCTTGACCGAACAACGATGGTTAACGTCTATAGGAATATGAGTTATTCTGGAATTAGAGTTGACTGAGAAGTGTCTCATTTTAGAGGAGGAGCAACTGATGACCCTTCGGTGACTGTTCCTTTAAACCTCTAAAACATCGTTGCTAAACACAATCAATAGTTTTATTAGTGTTCTTTGATTGATTGTTTGCAAAATTTATTGGATTTGTGCAATTGTTTATATTGCTTGTGTGATGGGTTAAGGTAAAGATAACTAATACGACCAATTGTTTGCTTTTCAGCAATCTCTTCCTCTGTAATCGCTTTGCTTAAAAACGAGAAATTTATTGGCGAAAATTTCCCTACGTGGAAATCGAACCTGAATACGATTCTGGTTATCAAGGATCTCAGGTTTGTCTTGACGGAGGAGTGTCCTCCAGTTCCTCCTCGCACTGCCGCTCAGGCAGTTAAAGACGCCCATGAACGTTGGACAAAGGCCAACGAGAAGGCCTGAGTCTATATCCTGGTCAGCTTGAATGAAGTCTTGGCCAAGCGTTATGAAATCGTGGAAACAACTAGGGAAATTATGAATTCCCTGCAGGAGATGTTTGGACTTTCGTTCTATCAACTCCACCACGATGCCTTGAAGAATGTCTTTAACGCCCGTATGCAAGAGGAGCATCCTGTTCGGGAATAATTTCTCGACATGATGAACCAGTTTAATATTGCAGAGGCGAACGACGGGGTTGTCTGCAAGCGCAGTCAGATTGCGTTCATCCTGCGTTCTTTTCCTCCTAGCTTCATGCAGTTCAGGACGAATGCCAGTATGAACAAAATACAGTTCAGCCTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGAAACAAATTAATCGATCTCAATAAAGTGTTATTTGAGTAATTCAGTAATTTGGTTATTGAATAATCGAGTTTGCATTAATAAACCCTAAATCCAATAAACTAAGATCCAAGGTTGTTTAAATGAAACTTGGACTAGTATGTGGGGACATACGGGGATCAGTGTCCAAGTAACAACCTAAATGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGAAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAGATGTAACGCCATTAACTAGTTTAGGTTTCTATTTCAATAGGATGACCTAGGTAACTCAATCTCAATCCTGAGTCTGTTATGAACCCCTTTCAGGAGGGACTGTCCTTAGATTTGTATAGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGTAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCTAGGGCTTGAACAAAGGCGCGCCGTCCTCTCCTAGCCTGAGAGGAACTCCTGTTTAGTGGTTGGACCCTAAACAACTTGTTCATTAGAGGAATCAGTGGTACTTAAGGAACCAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGAACACACGTGAAGGATTGACTTACTGCTTGGTCGATATCCGTGGACACAGAAATATTCTATAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGACTAAACTTGGTCAATGAGTTTGGCCAATTAGTCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAGAGACTTGAGGCAATTAAGTATAAATTGTAAATTGAAAGTGTTCAATTTATTTGGGGAATCGTATAATGTATATTGATGCATTATAATATAAAGTTTATGAAACTTTATAATATAATTTTTGAATTAATTTTAAAAAAATTAATTCTTGAGAGAAAGTATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGTAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGACCTTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGAAATTAATTCATTATTTATTAAAATTAGAGACTTTTTCCTATTAGGAAAAAGTATCCCTTTTCCTATTAGGAAAAAGGTCTTGGCCTTTACTATATATTGGACCCCTGGGGTGGGGTGAAAGGCATCTCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACAAGTCTCCAGCCTCTAGAAGTCTCAGAGTCATACCGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCGTGATTAATTCACAAGCAGTTGGTGAATTTAATCTGAGTCGTCAACGAGAGTAAGTAATTTGTTACTTTATAAATTAGATTTAGATCTAATATTTTTGTATGCTTAGCCTTAATATATATTTAGAATAGTTCTAATATTATTGCCAATGTATTGGTATTTTAGATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTCCGCTTTACGGAATTAAGGAATTCCAATCCTTCAAGCCTGACCACCCTCCTCAATGAGCTACAGATTTACAAGTCCATGCTGAAAAGCAAGGACAAGAATGTCGTGAAAGGAGAGGCCAATGTGGCCTATTCCAAGAAAAAGTTCTTGAAGGGTTCATCCTCAGGAACGAAATCTATACCTCAGGCTTCTTCATCGAAGCAAATTTAA

mRNA sequence

ATGGGCCCTGCTCTCTCTATGGCACGAGAGGGACTTCTGTTTGCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTCCATGAGGTCCTACTGAAAATTCCAGCAAGAAGGATCACAATAGCTTGTTGTTTTTCTGATATTTGGCAAGGAATTTGGAGATTTTCAATCAAGAACATTTACGCAATTGCGATTTTGCCCAGAAAACAGCTCCAGACGCAACAGCGTCGGGACGCTTATCACCGCGTGTCTCGACGCTGTCGTGATTTCACGCTACGGACGCTTGAAATCGAGCCAGCGTCGGGACGTTGTTCCTTAAGTGTCTCGACGTTGTCGCGATTTCGTGCAACGATCCATGCTCGGCTTCGTGTTGTTTTAGCGCGGCCTCCCTTCGGAAAGTGTTTGCATGGATCAATAATAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGAAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGAAATATTCTATAGTGAGAAGAGTGCAGCTGAAAAAGGTCTTGGCCTTTACTATATATTGGACCCCTGGGGTGGGGTGAAAGGCATCTCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACAAGTCTCCAGCCTCTAGAAGTCTCAGAGTCATACCGGTCCTGACCACCCTCCTCAATGAGCTACAGATTTACAAGTCCATGCTGAAAAGCAAGGACAAGAATGTCGTGAAAGGAGAGGCCAATGTGGCCTATTCCAAGAAAAAGTTCTTGAAGGGTTCATCCTCAGGAACGAAATCTATACCTCAGGCTTCTTCATCGAAGCAAATTTAA

Coding sequence (CDS)

ATGGGCCCTGCTCTCTCTATGGCACGAGAGGGACTTCTGTTTGCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTCCATGAGGTCCTACTGAAAATTCCAGCAAGAAGGATCACAATAGCTTGTTGTTTTTCTGATATTTGGCAAGGAATTTGGAGATTTTCAATCAAGAACATTTACGCAATTGCGATTTTGCCCAGAAAACAGCTCCAGACGCAACAGCGTCGGGACGCTTATCACCGCGTGTCTCGACGCTGTCGTGATTTCACGCTACGGACGCTTGAAATCGAGCCAGCGTCGGGACGTTGTTCCTTAAGTGTCTCGACGTTGTCGCGATTTCGTGCAACGATCCATGCTCGGCTTCGTGTTGTTTTAGCGCGGCCTCCCTTCGGAAAGTGTTTGCATGGATCAATAATAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGAAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGAAATATTCTATAGTGAGAAGAGTGCAGCTGAAAAAGGTCTTGGCCTTTACTATATATTGGACCCCTGGGGTGGGGTGAAAGGCATCTCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACAAGTCTCCAGCCTCTAGAAGTCTCAGAGTCATACCGGTCCTGACCACCCTCCTCAATGAGCTACAGATTTACAAGTCCATGCTGAAAAGCAAGGACAAGAATGTCGTGAAAGGAGAGGCCAATGTGGCCTATTCCAAGAAAAAGTTCTTGAAGGGTTCATCCTCAGGAACGAAATCTATACCTCAGGCTTCTTCATCGAAGCAAATTTAA

Protein sequence

MGPALSMAREGLLFAGWTSNRLFIRGALVLKDKEVHEVLLKIPARRITIACCFSDIWQGIWRFSIKNIYAIAILPRKQLQTQQRRDAYHRVSRRCRDFTLRTLEIEPASGRCSLSVSTLSRFRATIHARLRVVLARPPFGKCLHGSIIRDKAGYLILVTLCDTTHLVFDTDEMIQSIHVGDMRVGVSYAMSESGQFADSISLPFQGQDRMGAGNITVQDGIHSFPYWEIFYSEKSAAEKGLGLYYILDPWGGVKGISFILLLSENSPKGSHKSPASRSLRVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQI
Homology
[Close]
BLAST of Spg018466 vs. NCBI nr
Match: KAA0058447.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-04
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF KGS+SGTKS+P +S +K+
Sbjct: 90  KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHKGSTSGTKSMPSSSGNKK 147

Query: 340 I 341
           +
Sbjct: 150 L 147

[Close]
BLAST of Spg018466 vs. NCBI nr
Match: KAA0032020.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-04
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S SK+
Sbjct: 177 KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGSKK 233

[Close]
BLAST of Spg018466 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-04
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Sbjct: 177 KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

[Close]
BLAST of Spg018466 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-04
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Sbjct: 176 KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 232

[Close]
BLAST of Spg018466 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-04
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Sbjct: 177 KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

[Close]
BLAST of Spg018466 vs. ExPASy TrEMBL
Match: A0A5A7UUN7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00300 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-05
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF KGS+SGTKS+P +S +K+
Sbjct: 90  KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHKGSTSGTKSMPSSSGNKK 147

Query: 340 I 341
           +
Sbjct: 150 L 147

[Close]
BLAST of Spg018466 vs. ExPASy TrEMBL
Match: A0A5A7SMN4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001190 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S SK+
Sbjct: 177 KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGSKK 233

[Close]
BLAST of Spg018466 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-04
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Sbjct: 177 KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

[Close]
BLAST of Spg018466 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-04
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Sbjct: 177 KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233

[Close]
BLAST of Spg018466 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-04
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 280 RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ 339
           ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Sbjct: 294 KIAYTLTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKK 350

The following BLAST results are available for this feature:
BLAST of Spg018466 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058447.11.3e-0454.10gag/pol protein [Cucumis melo var. makuwa][more]
KAA0032020.12.8e-0455.00gag/pol protein [Cucumis melo var. makuwa][more]
KAA0044955.16.3e-0453.33gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.16.3e-0453.33gag/pol protein [Cucumis melo var. makuwa][more]
TYK14550.16.3e-0453.33gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Spg018466 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UUN76.1e-0554.10Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G0030... [more]
A0A5A7SMN41.4e-0455.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G0011... [more]
A0A5A7SMH83.0e-0453.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5D3CPJ63.0e-0453.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... [more]
A0A5A7V4M13.0e-0453.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... [more]
BLAST of Spg018466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..340

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018466.1Spg018466.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding