Spg018459 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018459
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S28
Location	scaffold3: 6270743 .. 6271685 (-)
RNA-Seq Expression	Spg018459
Synteny	Spg018459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTGCTTGCAATGGAGTTCAAGCTTCACTTTGACTGGTTAGTCTGGGACTAGGAACACTGAAGGAGGTTTTCGATTGCTTTCTCCCGAAAGATTTTCCCGATTTGGATTCCTTTGGCTTGATTGTATATTCCAATTCCTCTGTCTTTTTCCATAATCTGAAACCCTAATTTGACAACGAGTTCTCCTCCTTTGGCTTTTCCCACCAGATTGAAGCTACTGTCCCACTGTTGAACTCGCATTCCTTCGTAACTCTTCTCCATGGATTCTTCAATCAGTTTACTCAAATCCACTGACTTCTCCCGAAATCAAGCTCTTGAGCATCTACAGCAAAAGCGTAAATCCAAAATGGACGAGGCTCGAATTTGAGAGGCTTTCCATTACCAGGAGTGCAATAAAAATGGCATTTGAGGAACAATGTCTCTTCGAAATTCGCAGCACCTTGCGAAACCCTAGACGACATTGTGTTGACTGCTCCATCTTTGGTCTCTTTCTTCCTCACACAAACGGAAAGTCGAAGCCCATTCATGGAGGCGGGCAGGCCCTGAATGGGGACGACTTTAACAGAGAACAAGCAACTCATCAGCATTCCAATATGAGTAATAGCTCAAATCGGCTTACAATTCCAACTCCCCTCCGGATCTTCTCCCGCTGCCGCACATCTTCGATTTTCTTCCTCAGGAAAATGGAGTCTCAAATCAAACATGCAGTGGTGGTGAAAGGAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCCAGTCAGGGAAGGCTAGAAGGTTGCGTTGATGGAGAATTACTGTTGCCGCCATCATTTTTTCCTCTTTTAAGTGTGGATTTTAGTGACTTGTTTGCTCAAGACCTTAGGTTCTGGGGTTGA

mRNA sequence

ATGCTCTTGCTTGCAATGGAGTTCAAGCTTCACTTTGACTGCTACTGTCCCACTGTTGAACTCGCATTCCTTCGTAACTCTTCTCCATGGATTCTTCAATCAGTTTACTCAAATCCACTGACTTCTCCCGAAATCAAGCTCTTGAGCATCTACAGCAAAAGCGTAAATCCAAAATGGACGAGGCTCGAATTTGAGAGGCTTTCCATTACCAGGAGTGCAATAAAAATGGCATTTGAGGAACAATGTCTCTTCGAAATTCGCAGCACCTTGCGAAACCCTAGACGACATTGTGTTGACTGCTCCATCTTTGGTCTCTTTCTTCCTCACACAAACGGAAAGTCGAAGCCCATTCATGGAGGCGGGCAGGCCCTGAATGGGGACGACTTTAACAGAGAACAAGCAACTCATCAGCATTCCAATATGAGTAATAGCTCAAATCGGCTTACAATTCCAACTCCCCTCCGGATCTTCTCCCGCTGCCGCACATCTTCGATTTTCTTCCTCAGGAAAATGGAGTCTCAAATCAAACATGCAGTGGTGGTGAAAGGAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCCAGTCAGGGAAGGCTAGAAGGTTGCGTTGATGGAGAATTACTGTTGCCGCCATCATTTTTTCCTCTTTTAAGTGTGGATTTTAGTGACTTGTTTGCTCAAGACCTTAGGTTCTGGGGTTGA

Coding sequence (CDS)

ATGCTCTTGCTTGCAATGGAGTTCAAGCTTCACTTTGACTGCTACTGTCCCACTGTTGAACTCGCATTCCTTCGTAACTCTTCTCCATGGATTCTTCAATCAGTTTACTCAAATCCACTGACTTCTCCCGAAATCAAGCTCTTGAGCATCTACAGCAAAAGCGTAAATCCAAAATGGACGAGGCTCGAATTTGAGAGGCTTTCCATTACCAGGAGTGCAATAAAAATGGCATTTGAGGAACAATGTCTCTTCGAAATTCGCAGCACCTTGCGAAACCCTAGACGACATTGTGTTGACTGCTCCATCTTTGGTCTCTTTCTTCCTCACACAAACGGAAAGTCGAAGCCCATTCATGGAGGCGGGCAGGCCCTGAATGGGGACGACTTTAACAGAGAACAAGCAACTCATCAGCATTCCAATATGAGTAATAGCTCAAATCGGCTTACAATTCCAACTCCCCTCCGGATCTTCTCCCGCTGCCGCACATCTTCGATTTTCTTCCTCAGGAAAATGGAGTCTCAAATCAAACATGCAGTGGTGGTGAAAGGAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCCAGTCAGGGAAGGCTAGAAGGTTGCGTTGATGGAGAATTACTGTTGCCGCCATCATTTTTTCCTCTTTTAAGTGTGGATTTTAGTGACTTGTTTGCTCAAGACCTTAGGTTCTGGGGTTGA

Protein sequence

MLLLAMEFKLHFDCYCPTVELAFLRNSSPWILQSVYSNPLTSPEIKLLSIYSKSVNPKWTRLEFERLSITRSAIKMAFEEQCLFEIRSTLRNPRRHCVDCSIFGLFLPHTNGKSKPIHGGGQALNGDDFNREQATHQHSNMSNSSNRLTIPTPLRIFSRCRTSSIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPSQGRLEGCVDGELLLPPSFFPLLSVDFSDLFAQDLRFWG

Homology

[Close]

BLAST of Spg018459 vs. NCBI nr
Match: EXC03823.1 (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-15
Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 80  EQCLFEIRSTLRNPRRHCVDCSIFGLFLPHTNGKSKPIHGGGQALNGDDFNREQATHQHS 139
           ++CL +    + + R+H   C   GL   ++   +   H   +A  G    R  A H  +
Sbjct: 2   KKCLLKAPYVIEHIRQHREGCYPVGLAQRYSTAHTS--HANWRACVGHSVGRHAADHNQT 61

Query: 140 NMSNSSNRLTIPTPLRIFSRCRTSSIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVK 199
            +   + +    T   I +   + S     +MESQ+KHAVVVK MGRTGSRGQVTQVRVK
Sbjct: 62  LVQPRTIQTYSQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQVRVK 121

Query: 200 FLDDQNRYIMRNVKGP 216
           FLDDQNR+IMRNVKGP
Sbjct: 122 FLDDQNRFIMRNVKGP 135

[Close]

BLAST of Spg018459 vs. NCBI nr
Match: KAG7027430.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-15
Identity = 59/95 (62.11%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 142 SNSSNRLTIPTPLRI----------FSRCRTSSIFFLR-----------KMESQIKHAVV 201
           SN   + T P P+            FSRCRTS  FF R            MESQIKHAVV
Sbjct: 5   SNPPTQPTWPGPIHFIRNVNPSFISFSRCRTS--FFDRLPSLALRCVWVGMESQIKHAVV 64

Query: 202 VKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           VK MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 65  VKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 97

[Close]

BLAST of Spg018459 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-15
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 164 SIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           S+ F  +MESQIKHAVVVK MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 49  SLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 100

[Close]

BLAST of Spg018459 vs. NCBI nr
Match: KAE8008043.1 (hypothetical protein FH972_004591 [Carpinus fangiana])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-14
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 165 IFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           +F L +MESQ+KHAVVVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP
Sbjct: 4   LFILCRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGP 54

[Close]

BLAST of Spg018459 vs. NCBI nr
Match: KAG6595421.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-14
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 151 PTPLRIFSRCRTSSIFF---LRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRY 210
           P+ L + +   +SSI F   L  MESQIKHA+VVK MGRTGSRGQVTQVRVKFLDDQNRY
Sbjct: 25  PSFLSLVAAQASSSIVFHLLLSGMESQIKHAMVVKVMGRTGSRGQVTQVRVKFLDDQNRY 84

Query: 211 IMRNVKGP 216
           IMRNVKGP
Sbjct: 85  IMRNVKGP 92

[Close]

BLAST of Spg018459 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-14
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 171 MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           M++Q+K AVVVK MGRTGSRGQVTQVRVKFLDDQNR IMRNVKGP
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP 45

[Close]

BLAST of Spg018459 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.8e-13
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 171 MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGP 44

[Close]

BLAST of Spg018459 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-12
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 171 MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +R+IMRNVKGP
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGP 44

[Close]

BLAST of Spg018459 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-08
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 175 IKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGP
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGP 49

[Close]

BLAST of Spg018459 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-08
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 175 IKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGP
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGP 49

[Close]

BLAST of Spg018459 vs. ExPASy TrEMBL
Match: W9SEX7 (40S ribosomal protein S28 OS=Morus notabilis OX=981085 GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-16
Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 80  EQCLFEIRSTLRNPRRHCVDCSIFGLFLPHTNGKSKPIHGGGQALNGDDFNREQATHQHS 139
           ++CL +    + + R+H   C   GL   ++   +   H   +A  G    R  A H  +
Sbjct: 2   KKCLLKAPYVIEHIRQHREGCYPVGLAQRYSTAHTS--HANWRACVGHSVGRHAADHNQT 61

Query: 140 NMSNSSNRLTIPTPLRIFSRCRTSSIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVK 199
            +   + +    T   I +   + S     +MESQ+KHAVVVK MGRTGSRGQVTQVRVK
Sbjct: 62  LVQPRTIQTYSQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQVRVK 121

Query: 200 FLDDQNRYIMRNVKGP 216
           FLDDQNR+IMRNVKGP
Sbjct: 122 FLDDQNRFIMRNVKGP 135

[Close]

BLAST of Spg018459 vs. ExPASy TrEMBL
Match: A0A6J1C0B5 (40S ribosomal protein S28-1-like OS=Momordica charantia OX=3673 GN=LOC111006903 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 164 SIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           S+ F  +MESQIKHAVVVK MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 49  SLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 100

[Close]

BLAST of Spg018459 vs. ExPASy TrEMBL
Match: A0A5N6QPB7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004591 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-15
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 165 IFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           +F L +MESQ+KHAVVVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP
Sbjct: 4   LFILCRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGP 54

[Close]

BLAST of Spg018459 vs. ExPASy TrEMBL
Match: A0A2U1N763 (YELLOW STRIPE like 6 OS=Artemisia annua OX=35608 GN=CTI12_AA298740 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 171 MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPSQGRLE 222
           MESQIKHAVVVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP Q  ++
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPDQTHID 51

[Close]

BLAST of Spg018459 vs. ExPASy TrEMBL
Match: A0A0S3SUH5 (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G344000 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-15
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 163 SSIFFLR-KMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           SS FFL  +MESQ+KHA+VVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP
Sbjct: 23  SSPFFLNIRMESQVKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGP 76

[Close]

BLAST of Spg018459 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 75.5 bits (184), Expect = 7.0e-14
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 171 MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGP 44

[Close]

BLAST of Spg018459 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 75.5 bits (184), Expect = 7.0e-14
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 171 MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGP 44

[Close]

BLAST of Spg018459 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 171 MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 216
           M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +R+IMRNVKGP
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGP 44

The following BLAST results are available for this feature:

BLAST of Spg018459 vs. NCBI nr


Match Name	E-value	Identity	Description
EXC03823.1	1.2e-15	42.65	40S ribosomal protein S28 [Morus notabilis]	[more]
KAG7027430.1	2.0e-15	62.11	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022134697.1	2.7e-15	88.46	40S ribosomal protein S28-1-like [Momordica charantia]	[more]
KAE8008043.1	1.0e-14	86.27	hypothetical protein FH972_004591 [Carpinus fangiana]	[more]
KAG6595421.1	1.0e-14	73.53	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg018459 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	5.2e-14	86.67	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	9.8e-13	86.67	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	2.8e-12	84.44	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	5.6e-08	70.73	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	5.6e-08	70.73	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Spg018459 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9SEX7	5.8e-16	42.65	40S ribosomal protein S28 OS=Morus notabilis OX=981085 GN=L484_012438 PE=3 SV=1	[more]
A0A6J1C0B5	1.3e-15	88.46	40S ribosomal protein S28-1-like OS=Momordica charantia OX=3673 GN=LOC111006903 ...	[more]
A0A5N6QPB7	4.9e-15	86.27	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004591 PE=3 SV=1	[more]
A0A2U1N763	6.4e-15	86.27	YELLOW STRIPE like 6 OS=Artemisia annua OX=35608 GN=CTI12_AA298740 PE=3 SV=1	[more]
A0A0S3SUH5	8.3e-15	85.19	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 G...	[more]

BLAST of Spg018459 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	7.0e-14	86.67	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	7.0e-14	86.67	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	2.0e-13	84.44	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 174..215 e-value: 2.9E-15 score: 56.0
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 171..217
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 176..215 e-value: 9.27795E-20 score: 78.4459
None	No IPR available	GENE3D	2.40.50.140		coord: 168..219 e-value: 4.0E-19 score: 70.2
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 171..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018459.1	Spg018459.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044205	'de novo' UMP biosynthetic process
biological_process	GO:0006869	lipid transport
biological_process	GO:0035672	oligopeptide transmembrane transport
biological_process	GO:0006508	proteolysis
biological_process	GO:0019856	pyrimidine nucleobase biosynthetic process
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004151	dihydroorotase activity
molecular_function	GO:0005319	lipid transporter activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0035673	oligopeptide transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome