Spg018456 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018456
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationscaffold3: 15773250 .. 15773876 (-)
RNA-Seq ExpressionSpg018456
SyntenySpg018456
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCACCGACGACAGCACGATTTCAGTGGATAGAGTAATGCTACTCTATTGCCTTATGGAGGGGTTGGAGATCAACGTAGGGAGCATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAAAGAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATTGACCTGTCCTTGATCGGGAAGCTCCAGTAGAACAGCATCCAGAGGAAAGACAAAGCCTCGACATCTCAGGCTACTCCTCAATCAGGGCCGAATGTAGCTTCACCATCTTAACACACTCCTTTTACAGGGCCTTCACCATCATCAAGAGCCCTAGCCATTGCCTACCGCCAGCTAGATCAAATCAGGGAGAACCTGAAGACATATTGGGCGTATGCAAAGGAGCGGGATGAAGCCATTAGAGAGTTTTATCTCTCTATCGCCCCAAGTATTGCTCCGGTCTTTCCCAATTTCCCTCAGTCGCTGCTGCCTCAAGAAGACAAGGATTCTGATGAAGAGGAAGAAGAAAATGATGATGAAGATGATGAAGAGAAAGAGAGTTCCTCGAACGAGGACTAG

mRNA sequence

ATGCCAACCACCGACGACAGCACGATTTCAGTGGATAGAGTAATGCTACTCTATTGCCTTATGGAGGGGTTGGAGATCAACGTAGGGAGCATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAAAGAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCGGCCTTCACCATCATCAAGAGCCCTAGCCATTGCCTACCGCCAGCTAGATCAAATCAGGGAGAACCTGAAGACATATTGGGCGTATGCAAAGGAGCGGGATGAAGCCATTAGAGAGTTTTATCTCTCTATCGCCCCAAGTATTGCTCCGGTCTTTCCCAATTTCCCTCAGTCGCTGCTGCCTCAAGAAGACAAGGATTCTGATGAAGAGGAAGAAGAAAATGATGATGAAGATGATGAAGAGAAAGAGAGTTCCTCGAACGAGGACTAG

Coding sequence (CDS)

ATGCCAACCACCGACGACAGCACGATTTCAGTGGATAGAGTAATGCTACTCTATTGCCTTATGGAGGGGTTGGAGATCAACGTAGGGAGCATTATCAGGGATGAGATTTTAGCCTGTGGGAGAAAAAGAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCGGCCTTCACCATCATCAAGAGCCCTAGCCATTGCCTACCGCCAGCTAGATCAAATCAGGGAGAACCTGAAGACATATTGGGCGTATGCAAAGGAGCGGGATGAAGCCATTAGAGAGTTTTATCTCTCTATCGCCCCAAGTATTGCTCCGGTCTTTCCCAATTTCCCTCAGTCGCTGCTGCCTCAAGAAGACAAGGATTCTGATGAAGAGGAAGAAGAAAATGATGATGAAGATGATGAAGAGAAAGAGAGTTCCTCGAACGAGGACTAG

Protein sequence

MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRVKIVPGKDEERPSPSSRALAIAYRQLDQIRENLKTYWAYAKERDEAIREFYLSIAPSIAPVFPNFPQSLLPQEDKDSDEEEEENDDEDDEEKESSSNED
Homology
BLAST of Spg018456 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 61/201 (30.35%), Postives = 87/201 (43.28%), Query Frame = 0

Query: 1   MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRV 60
           +PTT   T+S DR++LL+ ++ G  INVG +I  EI AC  ++ G LFF SLIT+LC+  
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245

Query: 61  KIV--------------------------PGKDEERPSPSSRALAIAYRQLDQIRENLKT 120
           +                            P +  ++PS S  A A + R    I + LK 
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKA 305

Query: 121 ----------------------------YWAYAKERDEAIREFYLSIAPSIAPVFPNFPQ 148
                                       +WAY+KERD A+++   +      P FP FPQ
Sbjct: 306 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFPQ 365

BLAST of Spg018456 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 0

Query: 1    MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQ-- 60
            +PT+ DST+S +R+ +LYC+++G +INVG +I  EI  C  +  GKLFF  LIT+ C+  
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   ---------------RVKIVPGKDEERPSPSSRALAIAYRQLD-----------QIRENL 104
                            V   P +  +R +PS+   + +   +D           Q+ E L
Sbjct: 946  NVPMLNDEDPVPRKGVVSFEPDRAPKRTTPSTTTASTSRDPMDERLSKHEALQQQMCERL 1005

BLAST of Spg018456 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-10
Identity = 64/206 (31.07%), Postives = 91/206 (44.17%), Query Frame = 0

Query: 1   MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRV 60
           +PTT   T+S DR++LLY ++ G  INVG +I  EI AC  +++G LFF SLITQLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPGKDEER--------------------------PSPSSRALAIAYRQLDQIRENLKT 120
           +     +EE+                          PS S   +A + R    I + LK 
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 ----------------------------YWAYAKERDEAIREFYLSIAPSIAPVFPNFPQ 153
                                       +WAY+KERD A+++   +      P FP FPQ
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQ 236

BLAST of Spg018456 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-10
Identity = 59/193 (30.57%), Postives = 89/193 (46.11%), Query Frame = 0

Query: 1   MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRV 60
           +PTT    +S DR++LL+ ++ G  INVG +I  EI AC  ++ G LFF SLIT+LC+  
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  KIV------------------------PGKDEERPSPSSRALAIAYRQLDQIRENLKT-- 120
             +                        P +  ++PS S  A A + R    + + LK   
Sbjct: 176 PFLVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALE 235

Query: 121 ---------------YWAYAKERDEAIREFYLSIAPSIAPVFPNFPQSLLPQEDKDSDEE 153
                          +WAY+KERD A+++   +      P FP FPQ +L  +D D + E
Sbjct: 236 QRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEIL--QDLDYEYE 295

BLAST of Spg018456 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-08
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 2   PTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRVK 61
           PTT DS+ISV++++LLYC++ G  INVG ++   IL C ++R GKLFF SLI +L  +  
Sbjct: 350 PTTHDSSISVEKIILLYCVVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAG 409

Query: 62  IVPGKDEERPSPSSRALAIAYRQLDQIRE 91
           +    D+           I  + + ++RE
Sbjct: 410 VPEYTDDLVIKECEEKWTIDMKAVSKLRE 438

BLAST of Spg018456 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.9e-11
Identity = 61/201 (30.35%), Postives = 87/201 (43.28%), Query Frame = 0

Query: 1   MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRV 60
           +PTT   T+S DR++LL+ ++ G  INVG +I  EI AC  ++ G LFF SLIT+LC+  
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245

Query: 61  KIV--------------------------PGKDEERPSPSSRALAIAYRQLDQIRENLKT 120
           +                            P +  ++PS S  A A + R    I + LK 
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKA 305

Query: 121 ----------------------------YWAYAKERDEAIREFYLSIAPSIAPVFPNFPQ 148
                                       +WAY+KERD A+++   +      P FP FPQ
Sbjct: 306 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFPQ 365

BLAST of Spg018456 vs. ExPASy TrEMBL
Match: A0A7J6FZ22 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_026421 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.9e-11
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 0

Query: 1    MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQ-- 60
            +PT+ DST+S +R+ +LYC+++G +INVG +I  EI  C  +  GKLFF  LIT+ C+  
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   ---------------RVKIVPGKDEERPSPSSRALAIAYRQLD-----------QIRENL 104
                            V   P +  +R +PS+   + +   +D           Q+ E L
Sbjct: 946  NVPMLNDEDPVPRKGVVSFEPDRAPKRTTPSTTTASTSRDPMDERLSKHEALQQQMCERL 1005

BLAST of Spg018456 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 64/206 (31.07%), Postives = 91/206 (44.17%), Query Frame = 0

Query: 1   MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRV 60
           +PTT   T+S DR++LLY ++ G  INVG +I  EI AC  +++G LFF SLITQLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPGKDEER--------------------------PSPSSRALAIAYRQLDQIRENLKT 120
           +     +EE+                          PS S   +A + R    I + LK 
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 ----------------------------YWAYAKERDEAIREFYLSIAPSIAPVFPNFPQ 153
                                       +WAY+KERD A+++   +      P FP FPQ
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQ 236

BLAST of Spg018456 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 59/193 (30.57%), Postives = 89/193 (46.11%), Query Frame = 0

Query: 1   MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRV 60
           +PTT    +S DR++LL+ ++ G  INVG +I  EI AC  ++ G LFF SLIT+LC+  
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  KIV------------------------PGKDEERPSPSSRALAIAYRQLDQIRENLKT-- 120
             +                        P +  ++PS S  A A + R    + + LK   
Sbjct: 176 PFLVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALE 235

Query: 121 ---------------YWAYAKERDEAIREFYLSIAPSIAPVFPNFPQSLLPQEDKDSDEE 153
                          +WAY+KERD A+++   +      P FP FPQ +L  +D D + E
Sbjct: 236 QRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEIL--QDLDYEYE 295

BLAST of Spg018456 vs. ExPASy TrEMBL
Match: A0A803Q715 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 1   MPTTDDSTISVDRVMLLYCLMEGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRV 60
           +PT+ DST+S +R+ +LYC+++G +INVG +I  EI  C  +  GKLFF  LIT+ C R 
Sbjct: 123 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKC-RC 182

Query: 61  KIVPGKDEERPSP 74
             VP  ++E P P
Sbjct: 183 ANVPMLNDEDPVP 194

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON46472.11.2e-1030.35hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
KAF4375842.11.2e-1032.82hypothetical protein G4B88_026421 [Cannabis sativa][more]
PON59596.17.9e-1031.07hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON78020.17.9e-1030.57hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
XP_024971944.13.3e-0838.20uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5BCG45.9e-1130.35Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A7J6FZ225.9e-1132.82Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_026421 PE=4 SV=1[more]
A0A2P5CEY23.8e-1031.07Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE... [more]
A0A2P5DXM33.8e-1030.57Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
A0A803Q7154.2e-0946.58Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018456.1Spg018456.1mRNA