Spg018413 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018413
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 4721097 .. 4723989 (-)
RNA-Seq ExpressionSpg018413
SyntenySpg018413
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAAGAGACTTCCTGGACGAAAAAGGATTCTTAAATAGAGCAAGAACTTTGCTAGACTTTGTAACCAAGATCATCACTCAGTATAAATGGAAAGAATTTTGTGCTCACCCTCAGGAGGCCGTGGTGCCTCTAGTTCGAGAGTTCTATGCTCGATTGAGGGAGGAGAGCATGAGCATGGTGGTGGTGAGAGGGAAGATGGTCAGTTTTTCTTCGGTTGACATCAATAGGGTGTATCAGATTAAAGCACCCTTGCATCTAAGAGGCAATGATGCAATCAAGAACCCCTCGGTCAAGTAGTTAAAGGAACCATTGAAGATGGTGGCCAATAAAGGAGTTCAGTGGAAGGAGTCACAAACAAAGGTGAAGACACTAGCGCCAAGTGATTTAAAGCTAGAATCGACAGTGTGGCTTCACTTCATCAAAAACAGGTTGATGCCCACAAGCCACAACAGTACAATTTCAGTAGAGAGGGTTATGCGTCTCTACAGCATCATGAAGGGGTTGGAGATAAACATAGGGAGCATCATCAGAGAGGAAATCCTTTCATGTGGAAGGAAGAGAGCTCGAAAGTTGTTCTTTGGTTCCCTCATAACCCAACTTTGTCAGAGGGTGAAAATTGTTCGTGGAAAAGAGGAGGAACGTCACTTTTTCAGGCCCACTATCGACTTACCTCTGATTGGGAAGCTTCAACAAAACAATGCGTAGAGAAAGGACAAGGCTTCCACTTCCCACGCTACTCCATCACCAGGGCTGACACCTACTTACCCTCCACTACACACTCCTGTTTAAGGGCCTACACCATCACCAGAGGTCCTCGGATTTGCATTTAGACATCTAGACCGCATGAAAGAAAATTTGAAAAAATATTGCGTATACGCTAAGGAGAGGGATGAAGAAATTATAGAGTTTTATCTCTCTATCGCCCCAAACATTGCCCTTGTGTTTCCTACTTTTCCTTCAAGCTTACTGCCTCAAGATGAAGAAGAGTCTGATGAAGATGATGAAGAAGTCGAAGAAGGTCCCCCAGATGAGGAATATGGGAGTTTTCTGATCCTCTTTTACATGATTAAATCTATTTTTGTGAATATTTAGCTATTGTTTTTAGTTTTTAGCATGTTTAGTTTTCTGTTTTGATGGTGTAGTTGCTGATTTTTATTGTTTTGAATGTTTAGTTGGTTGTTAGTGATGTTTTTAGATTATTTTGCTGATTAGATTAGGTAGAGAATAACTTGAGTTTTTAAGTTTTCTGAAAAAGAAGGAAAAAACTGCTTGCTGTTTTTGTGCCAAATCTGTGAATTTTTTAAAACAAAATAAACTTTATGACTATTTTTATATTGAAAAAAAAATGTTTTGGAGAAACATGTTTTCATTCGAGTTTTCTTTTAAGTTCTTGATGTTGATAACTAGAGCTTATTTCTATCTCAAAAGTGCCACCGTCACAACCTATTTGTTTCTTAGTCATAGGCTTTCCACTAGTCTTTTTCTTTACAAAATTTTCTTAAGTCTAAACTTCCTCATGTTTAACCTTTCTAGCACACTAGGTGAGCTTAACCTTGACGTTTTGAAAAACAAAAGGCCTTATGTTAAGCCCATGACTCAAAAACAAAAGCTAATGAGGGCATTGTCTATCTTAAGTTTTAGGGGTGCTTTACTTTGTAAATATATATGTTTTGTGTAAGTTTGAACTGCTAGAAAGAAGATATATGCTCAGTATATTTATGAAAAAAAAAACCGAGAGTTACTCCTCCTCCCTAGAGTTTACTGAGTAACCGGAGGCATTCATGACACCCATGGTTTGCCACTGCATGAAAGGTTTACTTAGGGAAGTGAGTATTAGTCCGAGTTCGTGATCTTTACTCTTAGCTAGATATCTTCACCACAAAGTGTCAATAAGCGAGAACGAAGGTAGCGGTGACAACAAGGATACTCTTGGGAGAAAAAGAAGTTGAATAAAAAGAGCACCAACAGTCAAATAAGTTTGGGGGAGGTTTAGTAAACTCATCTATGGTCAAGGAACCTCAAAGATTAGGTTTTCTTAACTAAAAGGACTACACTAGGCTCTATGAGTGGGAGTTAGGTAGTTTAAACATATTGGTTAGGATGGACTAGGGAGAGTTTTGTTTTGAAAACGAAAAGTAGAAATCTTCATGCCTAGGAAACTTAGAAGTTGTGACTGGCACTAGAGTAGAAACCTCTCCTGAAAAGCAACTTTTAAGAAAACGATCTTGAAAAACATGTTTACTTGATTCCATATGGTTTATTGATGACATTTTGATTTGCAAGTAAGTTAGATGCTACTGTCATGATTGGCAATTACATATGATCCATAACATTTTGGTTTGCAATTATTATTGAGCTCTCACATTTTGATTTGCTACATGAGGTGACCTCTAACGTTCTGATTTGCTATTGCTTGAGGACAAGCAATGAGTCAAGTTTGCGGGTATGATAAGGGTAAAAAATATACCTATTTAACCCTTATGTTTAGCTCATTATCTTGTTAAAGTTGTATGTTTTAGATCAAATTTATTATTCCCGAGCTCAAAAAGTGTTAAAGTTGATGAATTAGGGAGTTGAGAGTCATGTATATCAAATTATGCATATTTATGCTTAAAAGGACCCATTTTGATATGAATTTGACTTAGTTTGGTGTTTTGCAGAAAAACAAAGGATATCTGGAATTTATCCAGAAATGCGACCGCATTCTGGCAAGGCAAAAACCAAATGCGACCTCATTTATGGGCAGATGAAGGCAGTTCCGAGTCTATCGCGAGTCAATTTGAACAAGAGTTTTGTGCACCTAACTGACTGTTTTGACCGCGAAATCGACTGGGCTACCCACCAACACCATTTTCGTGGCTCCTCAACTACTCTCCACACTATATAA

mRNA sequence

ATGAGAAAAAGAGACTTCCTGGACGAAAAAGGATTCTTAAATAGAGCAAGAACTTTGCTAGACTTTGTAACCAAGATCATCACTCAGTATAAATGGAAAGAATTTTGTGCTCACCCTCAGGAGGCCGTGGTGCCTCTAGTTCGAGAGTTCTATGCTCGATTGAGGGAGGAGAGCATGAGCATGGTGGTGGTGAGAGGGAAGATGGTTGATGCCCACAAGCCACAACAGTACAATTTCAGTAGAGAGGGTTATGCGTCTCTACAGCATCATGAAGGGGTTGGAGATAAACATAGGGAGCATCATCAGAGAGGAAATCCTTTCATGTGGAAGGAAGAGAGCTCGAAAGTTGTTCTTTGGTTCCCTCATAACCCAACTTTGTCAGAGGGTGAAAATTGTTCGTGGAAAAGAGGAGGAACGTCACTTTTTCAGGCCCACTATCGACTTACCTCTGATTGGGAAGCTTCAACAAAACAATGCGTAGAGAAAGGACAAGGCTTCCACTTCCCACGCTACTCCATCACCAGGGCTGACACCTACTTACCCTCCACTACACACTCCTGTTTAAGGGCCTACACCATCACCAGAGAGTTTTATCTCTCTATCGCCCCAAACATTGCCCTTGTGTTTCCTACTTTTCCTTCAAGCTTACTGCCTCAAGATGAAGAAGAGTCTGATGAAGATGATGAAGAAGTCGAAGAAGAAAAACAAAGGATATCTGGAATTTATCCAGAAATGCGACCGCATTCTGGCAAGGCAAAAACCAAATGCGACCTCATTTATGGGCAGATGAAGGCAGTTCCGAGTCTATCGCGAGTCAATTTGAACAAGAGTTTTGTGCACCTAACTGACTGTTTTGACCGCGAAATCGACTGGGCTACCCACCAACACCATTTTCGTGGCTCCTCAACTACTCTCCACACTATATAA

Coding sequence (CDS)

ATGAGAAAAAGAGACTTCCTGGACGAAAAAGGATTCTTAAATAGAGCAAGAACTTTGCTAGACTTTGTAACCAAGATCATCACTCAGTATAAATGGAAAGAATTTTGTGCTCACCCTCAGGAGGCCGTGGTGCCTCTAGTTCGAGAGTTCTATGCTCGATTGAGGGAGGAGAGCATGAGCATGGTGGTGGTGAGAGGGAAGATGGTTGATGCCCACAAGCCACAACAGTACAATTTCAGTAGAGAGGGTTATGCGTCTCTACAGCATCATGAAGGGGTTGGAGATAAACATAGGGAGCATCATCAGAGAGGAAATCCTTTCATGTGGAAGGAAGAGAGCTCGAAAGTTGTTCTTTGGTTCCCTCATAACCCAACTTTGTCAGAGGGTGAAAATTGTTCGTGGAAAAGAGGAGGAACGTCACTTTTTCAGGCCCACTATCGACTTACCTCTGATTGGGAAGCTTCAACAAAACAATGCGTAGAGAAAGGACAAGGCTTCCACTTCCCACGCTACTCCATCACCAGGGCTGACACCTACTTACCCTCCACTACACACTCCTGTTTAAGGGCCTACACCATCACCAGAGAGTTTTATCTCTCTATCGCCCCAAACATTGCCCTTGTGTTTCCTACTTTTCCTTCAAGCTTACTGCCTCAAGATGAAGAAGAGTCTGATGAAGATGATGAAGAAGTCGAAGAAGAAAAACAAAGGATATCTGGAATTTATCCAGAAATGCGACCGCATTCTGGCAAGGCAAAAACCAAATGCGACCTCATTTATGGGCAGATGAAGGCAGTTCCGAGTCTATCGCGAGTCAATTTGAACAAGAGTTTTGTGCACCTAACTGACTGTTTTGACCGCGAAATCGACTGGGCTACCCACCAACACCATTTTCGTGGCTCCTCAACTACTCTCCACACTATATAA

Protein sequence

MRKRDFLDEKGFLNRARTLLDFVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREESMSMVVVRGKMVDAHKPQQYNFSREGYASLQHHEGVGDKHREHHQRGNPFMWKEESSKVVLWFPHNPTLSEGENCSWKRGGTSLFQAHYRLTSDWEASTKQCVEKGQGFHFPRYSITRADTYLPSTTHSCLRAYTITREFYLSIAPNIALVFPTFPSSLLPQDEEESDEDDEEVEEEKQRISGIYPEMRPHSGKAKTKCDLIYGQMKAVPSLSRVNLNKSFVHLTDCFDREIDWATHQHHFRGSSTTLHTI
Homology
[Close]
BLAST of Spg018413 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-07
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 1   MRKRDFLDEKGF-LNRARTL--LDFVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREE 60
           ++ R    EKGF L+ + T+  L F+ ++ITQ+ WK+FCAHP++ +VPLVREFYA L + 
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLPFIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDP 97

Query: 61  SMSMVVVRGKMVDAHKPQQYNFSREGYASLQHHEGVGDKHREHHQ 103
             + V VRG         Q ++S E   ++    G+GD   EH +
Sbjct: 98  EENTVYVRG--------VQVSWSEEAINAV---FGLGDPVDEHSE 131

[Close]
BLAST of Spg018413 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-07
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 1   MRKRDFLDEKGF-LNRARTL--LDFVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREE 60
           ++ R    EKGF L+ + T+  L F+ ++ITQ+ WK+FCAHP++ +VPLVREFYA L + 
Sbjct: 29  IQNRPLNAEKGFVLDNSETMGQLPFIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDP 88

Query: 61  SMSMVVVRGKMVDAHKPQQYNFSREGYASLQHHEGVGDKHREHHQ 103
             + V VRG         Q ++S E   ++    G+GD   EH +
Sbjct: 89  VENTVYVRG--------VQVSWSEEAINAV---FGLGDPVDEHSE 122

[Close]
BLAST of Spg018413 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-07
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 1   MRKRDFLDEKGF-LNRARTL--LDFVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREE 60
           ++K+    EKGF LN + T+    F+ ++I Q+ W++FCAHP++ +VPLVREFYA L + 
Sbjct: 61  IQKQPLNAEKGFLLNNSETMGQQPFIAQVINQHNWRQFCAHPEDPIVPLVREFYANLTDP 120

Query: 61  SMSMVVVRGKMV 70
               V VRG  V
Sbjct: 121 EEDTVYVRGVQV 132

[Close]
BLAST of Spg018413 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-05
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 1   MRKRDFLDEKGFLNRARTLLD---FVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREE 60
           ++ R    EKGF+      L+   F+  +ITQ+ W+ FCAHP++ +VPLVREFYA +   
Sbjct: 29  IQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANMTNP 88

Query: 61  SMSMVVVRGKMV 70
               V VRG  V
Sbjct: 89  DDDTVYVRGVQV 100

[Close]
BLAST of Spg018413 vs. NCBI nr
Match: PON32444.1 (hypothetical protein PanWU01x14_361130 [Parasponia andersonii])

HSP 1 Score: 60.1 bits (144), Expect = 3.9e-05
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 22  FVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREESMSMVVVRGKMVDAHKPQQYNFSR 81
           FV ++I Q+ W++FCAHP++ +VPLVREFYA L +     V VRG         Q  +S 
Sbjct: 6   FVAQVINQHNWRQFCAHPEDPIVPLVREFYAHLTDPEEDTVYVRG--------MQVPWSE 65

Query: 82  EGYASLQHHEGVGDKHREHHQ 103
           E   ++    G+GD   EH +
Sbjct: 66  EAINAVY---GLGDPVDEHSE 75

[Close]
BLAST of Spg018413 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-08
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 1   MRKRDFLDEKGF-LNRARTL--LDFVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREE 60
           ++ R    EKGF L+ + T+  L F+ ++ITQ+ WK+FCAHP++ +VPLVREFYA L + 
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLPFIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDP 97

Query: 61  SMSMVVVRGKMVDAHKPQQYNFSREGYASLQHHEGVGDKHREHHQ 103
             + V VRG         Q ++S E   ++    G+GD   EH +
Sbjct: 98  EENTVYVRG--------VQVSWSEEAINAV---FGLGDPVDEHSE 131

[Close]
BLAST of Spg018413 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 1   MRKRDFLDEKGF-LNRARTL--LDFVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREE 60
           ++ R    EKGF L+ + T+  L F+ ++ITQ+ WK+FCAHP++ +VPLVREFYA L + 
Sbjct: 29  IQNRPLNAEKGFVLDNSETMGQLPFIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDP 88

Query: 61  SMSMVVVRGKMVDAHKPQQYNFSREGYASLQHHEGVGDKHREHHQ 103
             + V VRG         Q ++S E   ++    G+GD   EH +
Sbjct: 89  VENTVYVRG--------VQVSWSEEAINAV---FGLGDPVDEHSE 122

[Close]
BLAST of Spg018413 vs. ExPASy TrEMBL
Match: A0A2P5EK98 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181920 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 1   MRKRDFLDEKGF-LNRARTL--LDFVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREE 60
           ++K+    EKGF LN + T+    F+ ++I Q+ W++FCAHP++ +VPLVREFYA L + 
Sbjct: 61  IQKQPLNAEKGFLLNNSETMGQQPFIAQVINQHNWRQFCAHPEDPIVPLVREFYANLTDP 120

Query: 61  SMSMVVVRGKMV 70
               V VRG  V
Sbjct: 121 EEDTVYVRGVQV 132

[Close]
BLAST of Spg018413 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 1   MRKRDFLDEKGFLNRARTLLD---FVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREE 60
           ++ R    EKGF+      L+   F+  +ITQ+ W+ FCAHP++ +VPLVREFYA +   
Sbjct: 29  IQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANMTNP 88

Query: 61  SMSMVVVRGKMV 70
               V VRG  V
Sbjct: 89  DDDTVYVRGVQV 100

[Close]
BLAST of Spg018413 vs. ExPASy TrEMBL
Match: A0A2P5A7C9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_361130 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 22  FVTKIITQYKWKEFCAHPQEAVVPLVREFYARLREESMSMVVVRGKMVDAHKPQQYNFSR 81
           FV ++I Q+ W++FCAHP++ +VPLVREFYA L +     V VRG         Q  +S 
Sbjct: 6   FVAQVINQHNWRQFCAHPEDPIVPLVREFYAHLTDPEEDTVYVRG--------MQVPWSE 65

Query: 82  EGYASLQHHEGVGDKHREHHQ 103
           E   ++    G+GD   EH +
Sbjct: 66  EAINAVY---GLGDPVDEHSE 75

The following BLAST results are available for this feature:
BLAST of Spg018413 vs. NCBI nr
Match NameE-valueIdentityDescription
PON46472.11.4e-0739.05hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON35554.12.5e-0739.05hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
PON85987.15.5e-0744.44hypothetical protein TorRG33x02_181920, partial [Trema orientale][more]
PON65868.12.3e-0541.67hypothetical protein PanWU01x14_113570 [Parasponia andersonii][more]
PON32444.13.9e-0539.51hypothetical protein PanWU01x14_361130 [Parasponia andersonii][more]
BLAST of Spg018413 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018413 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BCG47.0e-0839.05Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5AGA51.2e-0739.05Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5EK982.7e-0744.44Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181... [more]
A0A2P5CXV11.1e-0541.67Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE... [more]
A0A2P5A7C91.9e-0539.51Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_361130 PE... [more]
BLAST of Spg018413 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..238

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018413.1Spg018413.1mRNA