Spg018330 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018330
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein MNN4-like
Locationscaffold3: 16429410 .. 16431960 (-)
RNA-Seq ExpressionSpg018330
SyntenySpg018330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATAAAAGAGCCAATAGATGAGCAACTAGCTGAGGCCCTTTCCTTAGTGGCCCACGAAGGAGTGAAGTGGAAAGAGTCCTTGACGGGGATTAGGACTCTGTTTTCTGGAGATTTGAAGCCAAAGGCGTCAGTCTGGCTTTATGTGATCAAGAACAGGATCATGCCTACGAAGCATGACGCGACGATCTCACAGGAATGTGTCATGTTCTTGTACAACATGTATAAAGGCCTGGATCTCAACCTTGACCTAATTATTTGGAAAGAGATCCTTGCCTGTGGGCATAAGAACGTGAGGGAGGCTCTTCTTTCCAAGTTTGATCACCAAAATCTGCAGCCTTGCAGTGTTGGGTTTTATGTCCTAAAACTCAAAGTTTGTAATCCTTTTGTAATAAAGATGTTACTCAATGAATTGTTTATTTATATACTCTAAATCCAATAGAAACATCCATGGTTATAATATGAAATACTCCAACTATATCGTAGATATACAGGGATCAAGTTCTAGTATATAACCTAAATGGTCTATAGTATAGGGATAAGGTTGGGTACCTTATCCTGGTAACACTATGAATGCAGCCTACTTTGCGAACGAGGAAAACGACGTGATCCTGGATCGCTCATGTAGAGACATGCGAGTAGGGACATTCTGTATAAAAGATCTTTACACAATACAAGACCAAGAAATAATTCACTCTTACTTTCTAACGACGTTTACTGTTAAGACTAACTATTTCATGCGATGACCTAGGTAACTCGATCTTAATCCTGAGCTTTCTATGAACTCCTGTTTGTTTGGGATTATCCTTTGATCTGCATGGGTGAGAGTGGCCCAACAGCACCGCTCAATAAACCTACCATTTTGGGGATAAGACTAGATGAATAGCTAGGGACATAGTATTGCAAGACAGAATTCACTCCTACCCGAATTAGGGATAGTAGAAAGGTTGTCCCCTTAAGTGCTGACTTCGAGGCTTGAACAAGGGGCCCCACCCTCTCATTGGTCCAAGAGCGACTCTGTTTATTGGTTGGACCATAAACAAATTTTTCATTAGAGGACCAGTGGACTTAAGGAATCAAGATGTGTTATAGGGGTAAAACGGACCTTTCACCTAGCTATAGTTACGAACGGCCTATGAAGGATTGACTTACTAATCATGGTTATATCGAGTGGACGGAAATATATCTACAGTGAGGGGAGTTCAACTACTAGGCTATAGTGGAGTGACCCGGTAGTTAACGGAGGTTGGTTAACTAGGCTAAAAGGGTTAGCCGATTAAACCTCGAACCTTTGGAGCTTATGATCTGTAGGTCCATTAGGTCCCCTTGCTAGCTTGAGAATAAGCTTTGGAACAATATGATGGAAGGAATTAGAATAAGTTCAAATTTGGTTTAGGAAAATGGTTGGTCATATTTGATATTACCACACATCGGGTTTTGGATAAACCGAGCTATGAGTGATTTAATATATTTAAATATGATTTAAATATCGAGCACATGAATAGGGATTCATGGTTGAAAAAACAGCATTTTGGAAATATTCAGGATTGGTAGCAAAATGTTAATTATATTAGATATTAAATTAATTATATATTTAATTATTTAATTAATAATTATTTTGAATTAATTTAAAATTCAAAATTCAAAATTGGATTTTAAATTTTCAGATTATTAATCATGGAATTAAATAAACTAAAATCTAATTTAATTTGAAATTTGAAAATTCAAAATTAAATTGAATTTTATGAGGTGGAGTGCAGGGTGACTAAACCCATGCACTTCCCCTCATTAAGCCACCAAATTACCCACTAATGTTTTGGTAATTTGGTGTCAAATCTTGGTGCTTCTTCTCAGCTTGTATTCCTCTATAAATGGGGATGAATTTTCTGAAGAAAATATGCTTGAATCCTTAAAGAAATGTTGCCAAAATCTCTCCAAAACTCAAGAACACAAAACCTCCATTGAAGCTTGGTTTTCAAGCTCTTTCCCTTCAAAATTCCATCACTAGAGGATCCCACAATCCGTTCCAAAGGCTTGAGGATAGCAAGGAAGATCAAGTGGTGGTTCGTGACAATTTAGAGGAGAAAAACAAGCAACCAATTTATCCAATTTGAAGAACAAAGAGGTTGGTACACACTACCCCTGTTTTTCTTCATATGAACAGCATGCTTTGTATGATCAAATTGAAGTTATTAAGTGTCTAAGATCCAAAATTTCTTCCGCATGTTAGATATTAACACCTTCATGCAGGAGTTGAGCCCGAGGTTCAAGAGGAGAGGGAGGTCGCCAGAACTTCCATAGAAGCGAGCTTGTTCAAGAAGCTCATCACCAACTAAAGGTTGAAGGTGACCCCTCCAGAAAAGAAGGCACAGCAGACCCCTCAAACAACAATGTCTCTAGTAGAACCTTCCACAGCGGCAGATGCGGCTGCAAATCAACCGCAAATTCCTGATCCTCCGCAGCAAGCCCCTCAGCCACAGCCTGAAGATAATTTAGTGGTGCTGAGAAGAGATTTAGAGCATATGTGGCGCAATGAAAGAACTACTTGA

mRNA sequence

ATGGCTATAAAAGAGCCAATAGATGAGCAACTAGCTGAGGCCCTTTCCTTAGTGGCCCACGAAGGAGTGAAGTGGAAAGAGTCCTTGACGGGGATTAGGACTCTGTTTTCTGGAGATTTGAAGCCAAAGGCGTCAGTCTGGCTTTATGTGATCAAGAACAGGATCATGCCTACGAAGCATGACGCGACGATCTCACAGGAATGTGTCATGTTCTTGTACAACATGTATAAAGGCCTGGATCTCAACCTTGACCTAATTATTTGGAAAGAGATCCTTGCCTGTGGGCATAAGAACGTGAGGGAGGCTCTTCTTTCCAAAAATGTTGCCAAAATCTCTCCAAAACTCAAGAACACAAAACCTCCATTGAAGCTTGGTTTTCAAGCTCTTTCCCTTCAAAATTCCATCACTAGAGGATCCCACAATCCGTTCCAAAGGCTTGAGGATAGCAAGGAAGATCAAGTGGTGGTGACCCCTCCAGAAAAGAAGGCACAGCAGACCCCTCAAACAACAATGTCTCTAGTAGAACCTTCCACAGCGGCAGATGCGGCTGCAAATCAACCGCAAATTCCTGATCCTCCGCAGCAAGCCCCTCAGCCACAGCCTGAAGATAATTTAGTGGTGCTGAGAAGAGATTTAGAGCATATGTGGCGCAATGAAAGAACTACTTGA

Coding sequence (CDS)

ATGGCTATAAAAGAGCCAATAGATGAGCAACTAGCTGAGGCCCTTTCCTTAGTGGCCCACGAAGGAGTGAAGTGGAAAGAGTCCTTGACGGGGATTAGGACTCTGTTTTCTGGAGATTTGAAGCCAAAGGCGTCAGTCTGGCTTTATGTGATCAAGAACAGGATCATGCCTACGAAGCATGACGCGACGATCTCACAGGAATGTGTCATGTTCTTGTACAACATGTATAAAGGCCTGGATCTCAACCTTGACCTAATTATTTGGAAAGAGATCCTTGCCTGTGGGCATAAGAACGTGAGGGAGGCTCTTCTTTCCAAAAATGTTGCCAAAATCTCTCCAAAACTCAAGAACACAAAACCTCCATTGAAGCTTGGTTTTCAAGCTCTTTCCCTTCAAAATTCCATCACTAGAGGATCCCACAATCCGTTCCAAAGGCTTGAGGATAGCAAGGAAGATCAAGTGGTGGTGACCCCTCCAGAAAAGAAGGCACAGCAGACCCCTCAAACAACAATGTCTCTAGTAGAACCTTCCACAGCGGCAGATGCGGCTGCAAATCAACCGCAAATTCCTGATCCTCCGCAGCAAGCCCCTCAGCCACAGCCTGAAGATAATTTAGTGGTGCTGAGAAGAGATTTAGAGCATATGTGGCGCAATGAAAGAACTACTTGA

Protein sequence

MAIKEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDATISQECVMFLYNMYKGLDLNLDLIIWKEILACGHKNVREALLSKNVAKISPKLKNTKPPLKLGFQALSLQNSITRGSHNPFQRLEDSKEDQVVVTPPEKKAQQTPQTTMSLVEPSTAADAAANQPQIPDPPQQAPQPQPEDNLVVLRRDLEHMWRNERTT
Homology
BLAST of Spg018330 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-10
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 0

Query: 3   IKEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDA 62
           I +P +E++ +AL  +   G +W  SL GI+TL S  L P+A +W+Y++K RI+PT HD 
Sbjct: 263 IDDPQEEKMEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRIIPTSHDK 322

Query: 63  TISQECVMFLYNMYKGLDLNLDLIIWKEILACGHKNVREALLSKNVAKISPKLKNTKP 121
           T+S++ VM  Y +  G+ +++  +I  +         +EA   K     SP+  N +P
Sbjct: 323 TVSRDRVMAAYCIACGILIDVSHLIAAQ--------AKEAAQRKQRQGKSPRAINARP 372

BLAST of Spg018330 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-09
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 4   KEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDAT 63
           KEP D  +  AL  VA  G+KW  +      LF  +LK  ASVWL  IK  +MPT+HD T
Sbjct: 215 KEPSDIDMQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNT 274

Query: 64  ISQECVMFLYNMYKGLDLNLDLIIWKEILA 94
           IS E +M LY + + + LN+D II++ I A
Sbjct: 275 ISLERIMLLYCIMEEIPLNVDEIIYEPIEA 304

BLAST of Spg018330 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-09
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 6    PIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDATIS 65
            P DEQ+ EA  L+      W  S  G  +L   D+  +A+VW+YV+KNR++PT +D++I 
Sbjct: 1194 PSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLIPTSYDSSIK 1253

Query: 66   QECVMFLYNMYKGLDLNLDLIIWKEILACGHK 98
            +   M +Y + KG++ N   +I  EI +C  K
Sbjct: 1254 RNRAMIVYILVKGVEFNFGELIRNEIQSCSEK 1285

BLAST of Spg018330 vs. NCBI nr
Match: PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-09
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 3   IKEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDA 62
           +++  + +LA  L  VA  G +W  S  G+ T     L P A +W + +K+R++PT H  
Sbjct: 50  VEDITEPELAMVLETVAIAGAEWNVSSQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGK 109

Query: 63  TISQECVMFLYNMYKGLDLNLDLIIWKEILAC 95
            +S+E V+ LY+M  G  +N+  +I +EI AC
Sbjct: 110 IVSKERVLLLYSMLTGKSINMGRMIHREICAC 141

BLAST of Spg018330 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-09
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 0

Query: 2   AIKEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHD 61
           AI EP   +LA  L  VA  G +W  S  G  T     L P A VW + +K+R++PT H 
Sbjct: 42  AITEP---ELATVLETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHG 101

Query: 62  ATISQECVMFLYNMYKGLDLNLDLIIWKEILA 94
            T+S+E V+ LY+M  G  +N+  II +EI A
Sbjct: 102 KTVSKERVLLLYSMLTGKSINVGQIIHREICA 130

BLAST of Spg018330 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.0e-10
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 4   KEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDAT 63
           KEP D  +  AL  VA  G+KW  +      LF  +LK  ASVWL  IK  +MPT+HD T
Sbjct: 215 KEPSDIDMQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNT 274

Query: 64  ISQECVMFLYNMYKGLDLNLDLIIWKEILA 94
           IS E +M LY + + + LN+D II++ I A
Sbjct: 275 ISLERIMLLYCIMEEIPLNVDEIIYEPIEA 304

BLAST of Spg018330 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 6    PIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDATIS 65
            P DEQ+ EA  L+      W  S  G  +L   D+  +A+VW+YV+KNR++PT +D++I 
Sbjct: 1194 PSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLIPTSYDSSIK 1253

Query: 66   QECVMFLYNMYKGLDLNLDLIIWKEILACGHK 98
            +   M +Y + KG++ N   +I  EI +C  K
Sbjct: 1254 RNRAMIVYILVKGVEFNFGELIRNEIQSCSEK 1285

BLAST of Spg018330 vs. ExPASy TrEMBL
Match: A0A2P5BNT0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_223230 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 3   IKEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDA 62
           +++  + +LA  L  VA  G +W  S  G+ T     L P A +W + +K+R++PT H  
Sbjct: 50  VEDITEPELAMVLETVAIAGAEWNVSSQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGK 109

Query: 63  TISQECVMFLYNMYKGLDLNLDLIIWKEILAC 95
            +S+E V+ LY+M  G  +N+  +I +EI AC
Sbjct: 110 IVSKERVLLLYSMLTGKSINMGRMIHREICAC 141

BLAST of Spg018330 vs. ExPASy TrEMBL
Match: A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-09
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 0

Query: 2   AIKEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHD 61
           AI EP   +LA  L  VA  G +W  S  G  T     L P A VW + +K+R++PT H 
Sbjct: 42  AITEP---ELATVLETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHG 101

Query: 62  ATISQECVMFLYNMYKGLDLNLDLIIWKEILA 94
            T+S+E V+ LY+M  G  +N+  II +EI A
Sbjct: 102 KTVSKERVLLLYSMLTGKSINVGQIIHREICA 130

BLAST of Spg018330 vs. ExPASy TrEMBL
Match: A0A5A7U0U4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001210 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-09
Identity = 43/99 (43.43%), Postives = 53/99 (53.54%), Query Frame = 0

Query: 4   KEPIDEQLAEALSLVAHEGVKWKESLTGIRTLFSGDLKPKASVWLYVIKNRIMPTKHDAT 63
           K P D  L EAL      G KW +  T +  LF  +L  +ASVWL  IK  IMPT HD  
Sbjct: 151 KNPKDRNLQEALEKAKWSGTKWDQIPTYMYQLFPHNLTTEASVWLVFIKKNIMPTHHDNI 210

Query: 64  ISQECVMFLYNMYKGLDLNLDLIIWKEILACGHKNVREA 103
           IS E +M LY +   + +N+  II  E L  G K+ REA
Sbjct: 211 ISMERIMLLYYIIMEILVNVGEIIC-EHLTAGVKHPREA 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904385.15.0e-1033.90uncharacterized protein LOC120090747 [Benincasa hispida][more]
KAA0048500.11.5e-0945.56protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu... [more]
XP_022154847.13.2e-0936.96LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia][more]
PON50458.14.2e-0934.78hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii][more]
PON62892.15.5e-0941.30hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TZE07.0e-1045.56Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
A0A6J1DMT31.6e-0936.96LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia... [more]
A0A2P5BNT02.0e-0934.78Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5CPE82.7e-0941.30Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE... [more]
A0A5A7U0U47.8e-0943.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018330.1Spg018330.1mRNA