Spg018281 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018281
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionYcf3-interacting protein 1, chloroplastic
Locationscaffold3: 11883645 .. 11890523 (+)
RNA-Seq ExpressionSpg018281
SyntenySpg018281
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGACCAAATCATCAGGGAAGACTACAGAGGATGAAGATATGGAGAGAGAATGGGAAGGGAATAAAAGACGTGCGGAAAAAAAGTGGTTATGAGAAATATAATAATAATAATAATAATAACAATTAAAAAAAATAAACAAAATAAATAAATAAATAATAACAAAAATAACAACAACAGTCTTATACAATATAATAAAATAAACATAAACACTAAAATAATAAGAAAAATAAGAAAATGATGTTGGGATTTATGCCCTAAAACTCGTAGATAGTGAATGTAAACAAATTGTATACTTGTTTCAATCAAATGTTATTGAGTTTCAACAATAAAGTGTTATTGTTAAATATTACACAATTTGACCCAAATACAATAAACTAAGATCCAAGGTTGTTTGTATGTAACTTGAACTAGTATGTGGGGACATACGGGGATCAATGTTCAAGTAACAACCTAAAAGGTCTATAGTACAAGAATAAGGTTGAGTACCTTATCCTGATAACACTATGAGATACGACCTGCTTTGTATTTGATACAGACGCATTGATCCAAGGCATTCATGTGGTAGACATGCAAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCAGACCATGAAATAGTAAACCACTAGATATAACACCGTTAACTAATTAGGTTACTGTTTCAATAGGATGAACTAGGTAACTCAGTCTTAATCCTGAGTGTGTCATGAACTCTTTCTCATGAGGGATTGTCCTTTGATTAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCTTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTGGGAAAAGTAGATGAGTGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCCGCTCTCTCACTGGCCCGAGAGGGACTTTCTGTTTATTGGTTGGACCATAAACAGATTGTTCATTAGAAGAGCACTGGTACTTAAGGAGACAGATGTAACACAGGGGTAAAACGGTAATTTGACCCAGCTGTGATTACGAACACTCGTGAAGGATTGACTTACCGATATAGGTCTATATCCGTGGACACATAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAGTGGAATGACACACAATTAATGAATATTGGTTAACCTGATTAATGAGTTTAATCGGTTAACCTCATATCATTGGAGCTTCTGATCTGTAGGTCTATTAGGTCCTCCTGCTAGCTCGTAAAGAGTAATTAGGAAAAATTATATCTTGAGAGAATTTGAATAGTTCAAATTCATATTGGGAATTAAGTTAATTGTATGAGATACAAATTAATATAATGTATAATGATACATTAAAATGTAAGGTCTAATTTGAAATTAAACTTTATTATTATGAGAGAAATAAATATTTGAAGAAGTTCAAATATTAATATGAATTTGATTCATATTAAATTTATAGGATATAAGAGAATTGGAAGGAGTTCCAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGCCTGAAATTAAATATATGATATTTAATTGGATAATTAATTAATTAACTAATAGAAGGTCTGAAATTAAATATATGATATTTAATTGGTGATTAGTTAATTTAAAGAATTAATTAATTGGAAATTAATCAATTATGGAAATGATTAATCACTTATGGAAGTAATTAATCATTTATGGAAATGATTTAATCACTTATGGAAGTGATCAATCATTTATGGAAAAGATTAATCAATTATGGAATTGATTGGTTATGGAATTGATTAATCATGGAAAAGATTAAATCTTTTTTTTTTTTTTGAGTACAATGGAAAAGATTAAATCAGTTATGGAAATAATTGATTTTAAATGAATATTTTATTCATGGCCTTTCTCCTATAAATAGAACACTAACCCTAGGGTTTAGTGACTACAACATAAGGCCACAAGAATGCACTCTTGCATTCTCTCTAGCCTCCCTTTCATATTCTCTCAATTCAAGAACTCTAGGGAAAATTTTCTCTCTAAAGTTTTTCCCATTCAAGATTAGGTAGTCCCACAACTACGTTCCTAATCTCAGAGTTATAGCGGGGAAGATCAATTGGTGGTGTCCCAATTGTTGACGCTCGATCCAAAATCAAGAAAGGTGTCCGTTGAAGAATTCAGAGTCGTCAGACGGAGGTATGTTTCTCATCGCTTAACTTTTTGCCAATGTATTGGTATTTTGTAGAACAAAATTAATTTACGAATGGTCCAATTGCTTTCGCTGTAACGGAATTGGGAATTCCAATCCTTCAAATGAATCGGACCAAATACCGTATCTACAGTTTGCCCCCCTTTGTTCGTCCTAAAGGAACTTAATGATGGACAAAGGAAAAGGTAAAGTATTTGGTCGGTGAATTTTTTATGAAAATAGCTATCTTAGCTAGACAAAAACTTAAGAAGGTTTTGATCTTAGCTCCAGGGTTGAGTTCAAAATATATTGACCTCAGTTCTAGGATTGGGTTCAATTTAACCAAAAATTTGAGAAAGCTTTTACCTCAGCTCCAAGGCTGGGCTCGAAATTTATTGGACTTGATGGATACAGGCTTTGACCTCAGTTCTAGGACTGGGTTCGATTTAACCAAAATTTGAGAAGACTTCGACCTCAGCTCTAGGGCTGGGTTCAAAATATATTGGACCTGATGGATACAAGCTTCGACCTCAGTTCTAGGATTGGGTTCAATTTAACCAGAATTTGAGAGGGTTTCGACCTAAGCTCCAAGACTGGGTTTGAAATATATTGGACTTGATGGATACAGGCTTCGACCTTAGTTCTAGGACTGGGTTCGATTTAACCAAAATTTGAGAAGACTTCGACCTCAGCTCTAGGGCTGGGTTTGAAATATATTGGACCTGATGGATACAGACTTCGACCTCAGTTCTAGGACTGGGTTCGATTTAACCAGAATTTGAGAGGGTTTCGACCTCAGCTCCAAGACTGGGTTCGAAATGTTGGGTTTTATGTCCTAAAACTCGTAGATAGTGAATGTTAATGAATTATATACTTGTATCAATAAAGTGTTATTGAGGTTTATGCAATAAAGTGTTATTGTCATTTTAAGTCTAAAATTGCACAATATAACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTATATGTAACTTGAACTAGTATGTGGGAACATACGGGGATCAGTGTTCAAGTAACAACCTAAAAGGTCTATAGTACAGGGATAAGGTTGTGTACCTTATCCTGGTAACACTATATGATACGACCTGCTTTGTATTCGATACAGACATATTGATCCAAGGCGTCCATGTAGGAGACATGTGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTAGTTAGGTTACTATTTCAATAGGATGACCTAGGTAACTCAGTCTTAATCCTGAGTGTGTCATGAACTCCTTCTCACGAGGGATTGTCCTTTGATTAGTATGGGTGAGAGTGGCCTTCACGCCGACTCAATAAGCCTACCTTCTTGGGGACAAGACTGAGTGGGGAGCTGGGGACATGACAACACAAGATGGAATTCACTCATTCCCGCTTCTAGGAGAAGTAGATGAATGTTCCCTTAAGTGGTGACTCCGGGTCTTGAACAAAGGGATCCCGCGCTCTCACTGGCCCGAGAGGGACTTTCTGTTTATTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAGATAGAGGTAACTCAGGGGTAAAACAGTAATTTGACCCAGTTATAGTTACTCGTGAATGATTGACTTACCGTTATTAGTCAATATCCGTGGACATAGAAATATTCTACAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCCACAGTCAATGAATATTGGTTAACTCGATTAATGAGTTTAGTCAGTTAACCTCATATCATTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCCTGCTAGCTCGTAAAGAGTAATTGGGAACAATTTATCTTGAAGGAATTTGAATAGTTCAAATTCATCTTGGGAATCAATTTAATTGTATGAGATACAATTAGTATAATGTATGGTGATGCATTATAATATAAAGTTTAATGTAAGATTAAACTTTATTAAATTGAGAGAATAATATATTTGAAAGAGTTCAAATATGTAATTAATTAAATATATGATATTTAATTAGTAAATAAAATTAATTAATTGTGAATTAATTAATTATTCAATTTAGTCTAATTAAATGTGATTTAATTAAACTATATTACATGAGAGATATATTAGAATATGATTCTAATATGTAATTAATTAAATATGGTAGATATTTAGTTAATTATAAAATTAATTAATTTTTGAATTAATTAATTTTTCAATTTAATTTAGTTAAATGTGATTTAATTGAATTAAATCTATAGTTTAATTTTAATGTGAATTGGATTCATATTAAAACTATAGGTTATATGAGAGATGCACATTTGAATATGATTCAAATGTTTGGTTAATTAAATATGTGATATTTAATTGGTCCAATAATTAATTAATTATTGGAATTAATTAATTGTGTAGTTTAATTTATTTCTACTATATATAAAAGGGGCTTAGAGGGGAGAATTTTTACATTCCCTTATTGCCCCTAACATTTTTAATAATGACTACTTTATCCTTTTACCCTAATTAATGATATTTATATTTAATTAGAGTGGAGGCACTGTTCCTGTGAAATCGTGAAATCGATTTGGATAACTGGTCAGTAGAGAACAGTGGCGCCCATTCCACCGGCGAAACTGATCCACAATTGGTTGCGGTCATTCTTCCGGCCATTTAGTCCCACCACACAACATTCACAGCGACCCCTAACTCCTACTTCTCGACAGTGGCGACGATTCAGACTTCCACACCAAAAAGCTCACGACGATTTCTCTTGACCCTCGCAAGCAGAATGGAGGAGAAGAAAGGTCATCACAGTACTGTAATTTATCATTAGCTCCGCCTTGGAACCAAGCTCTGCATCGTTCTCAGCTCTCTCTCTGTCAAAGAAGTCCTCCGCCACCAAGAAACCATCTATTGGGGTTACACATATTTACCAACGGTTCGAATTTCATCGTGAAATCCACGAAGTTGCAGCACATATTTACAACGAAGAGATTATGCTCCGAAGACTCCTAAATTCATGGTTTAGGAGTTTTTAATAGAATTAAAATAATTCTTGGGTTTCTTTTTTATTTTTGAAATGGTTTAGGAGAAATTAATTAATCATATGCTTAGGTTCTATAAATGTTTTGTAATTGAAATATTGTTTTACTATTTGCAATGTTGAAACCCACTTTGCCGACGTCTATTGGGGTTCCGACCGATTCGAATACGCCTTTAATCTTCCATGAAGCACTTCAAGTTCTCTCCCAGAATAGTAAGTTTAGGATTTGTTTTTTTCCCCTCTGGTTTTGTTTTTGTATGCGTTGATCACCTTGATGAATTTTACTTTCGAGTTAAAAATGGCGATCGACTGATTAAGCAAAGTCAAGAAGAGGGGATTACAAATGATGAGATCACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCGAAGCAATTGTCGGAAACTGTATGAGTTTTGGCGAACTCCTCAAGGCTCAGCTCTTTGAGAATCCGACAGTGCTCACGAAATAAGGTATTAAATGTAGAGTTTAAATTGGATATCTACTTCCTGGAAAGAAGTCTGTGTTGGGCAATTTAATTAAATTTAATTTCTTTTTCCCAGCCATGGGATTCAAAATTCTCATACCTTTCTTTTCTTGGTTCCATTGAGTGTTTGTTCCATTGGTTTTAGTTTTTTTTATTGAGTGTTTGTATTCTGCTCTTGTTGTTGAAGCCATTACTGTGAGAACCATTTTACCAGAACTGAAATGCCATTTGAAGAAAAATTTAGGCACTCTTTTTTATTTGAATGTCGGTATGGTTGGTAAATTAAATTTAAAATTCATATAGACACATCCTTAATACAGACACATCCACTTCTTTTCTGTGATTTTATCAAATTGTAAGTTTCTATCAGATGCTGCATATGGTTTGAACTTGTGTGTGTTAAACTTATTTTGTTGATTGTGGTGTGGTGTTCATACGTGTAGGTTGAGGCACCCAAGAAGAAACGCAGTGAATCTTTATATGCAAAAGCCACAGACACTGGTGTGGATCCTCGAGAGGCTGGGAAAAGACTAAACATTGATTGGGACACTGCAGCTGAGATCGAAGATGCCGACTTGAGTGATGACCCGGAAGTGCCTACTACTGTGGTTTGTTTTCTGGGCCCATCATCAAAGACATTGTGCTTTAGTCCAACTTATTTATTGTGATAATGCAGTTCCGATTCATATTATGGATTTGTCACCAATGCTGCTAGGACAGTAGTGGAATTTTTAAAGTAGATAACGAGATGTTAACTGTAACTGAGAGTTAAAATTGTAAAAAGAAAATTTGCATGGTATTACAATTGCTGATGAGGAAATTAAAATTGATTTGATGCAGGGATATGGAGCACTGTACATTGTGACAACTTTCCCAATGATAATTGGCATCTCAGTAGTTCTAATCCTTTTCTACAGCTCTCTTCAATAGTGTATGTGGCAGTAGACGTGGTTGATAATTGCCGCCTTTGCAGTTTCTGACCTTTCACGAGAGTTTATTATGTATTGAGTGTTTGTATTTCGCTATGGTTGGCAAATTAAATTTAAAATTCATATAGACACATCCTTTCAAAGCATACATGCACATCTTT

mRNA sequence

ATGGACAAGACCAAATCATCAGGGAAGACTACAGAGGATGAAGATATGGAGAGAGAATGGGAAGGGAATAAAAGACCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCTTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTGGGAAAAGTAGATGAGTGTCTATTAGGTCCTCCTGCTAGCTCCGGGGAAGATCAATTGGTGGTGTCCCAATTGTTGACGCTCGATCCAAAATCAAGAAAGGTGTCCGTTGAAGAATTCAGAGTCGTCAGACGGAGGTCCATTAGGTCCCCTGCTAGCTCTGGCGACGATTCAGACTTCCACACCAAAAAGCTCACGACGATTTCTCTTGACCCTCGCAAGCAGAATGGAGGAGAAGAAAGGTCATCACAGTACTGTAATTTATCATTAGCTCCGCCTTGGAACCAAGCTCTGCATCGTTCTCAGCTCTCTCTCTGTCAAAGAATTAAAAATGGCGATCGACTGATTAAGCAAAGTCAAGAAGAGGGGATTACAAATGATGAGATCACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCGAAGCAATTGTCGGAAACTGTTGAGGCACCCAAGAAGAAACGCAGTGAATCTTTATATGCAAAAGCCACAGACACTGGTGTGGATCCTCGAGAGGCTGGGAAAAGACTAAACATTGATTGGGACACTGCAGCTGAGATCGAAGATGCCGACTTGAGTGATGACCCGGAAGTGCCTACTACTGTGGTTTGGATATGGAGCACTGTACATTGTGACAACTTTCCCAATGATAATTGGCATCTCAGTAGTTCTAATCCTTTTCTACAGCTCTCTTCAATAGTGTATGTGGCAGTAGACGTGGTTGATAATTGCCGCCTTTGCAGTTTCTGA

Coding sequence (CDS)

ATGGACAAGACCAAATCATCAGGGAAGACTACAGAGGATGAAGATATGGAGAGAGAATGGGAAGGGAATAAAAGACCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCTTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTGGGAAAAGTAGATGAGTGTCTATTAGGTCCTCCTGCTAGCTCCGGGGAAGATCAATTGGTGGTGTCCCAATTGTTGACGCTCGATCCAAAATCAAGAAAGGTGTCCGTTGAAGAATTCAGAGTCGTCAGACGGAGGTCCATTAGGTCCCCTGCTAGCTCTGGCGACGATTCAGACTTCCACACCAAAAAGCTCACGACGATTTCTCTTGACCCTCGCAAGCAGAATGGAGGAGAAGAAAGGTCATCACAGTACTGTAATTTATCATTAGCTCCGCCTTGGAACCAAGCTCTGCATCGTTCTCAGCTCTCTCTCTGTCAAAGAATTAAAAATGGCGATCGACTGATTAAGCAAAGTCAAGAAGAGGGGATTACAAATGATGAGATCACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCGAAGCAATTGTCGGAAACTGTTGAGGCACCCAAGAAGAAACGCAGTGAATCTTTATATGCAAAAGCCACAGACACTGGTGTGGATCCTCGAGAGGCTGGGAAAAGACTAAACATTGATTGGGACACTGCAGCTGAGATCGAAGATGCCGACTTGAGTGATGACCCGGAAGTGCCTACTACTGTGGTTTGGATATGGAGCACTGTACATTGTGACAACTTTCCCAATGATAATTGGCATCTCAGTAGTTCTAATCCTTTTCTACAGCTCTCTTCAATAGTGTATGTGGCAGTAGACGTGGTTGATAATTGCCGCCTTTGCAGTTTCTGA

Protein sequence

MDKTKSSGKTTEDEDMEREWEGNKRPWVRVANTPTQYAFFFGDKTEWEAGDMTTQEGIHSFPLLGKVDECLLGPPASSGEDQLVVSQLLTLDPKSRKVSVEEFRVVRRRSIRSPASSGDDSDFHTKKLTTISLDPRKQNGGEERSSQYCNLSLAPPWNQALHRSQLSLCQRIKNGDRLIKQSQEEGITNDEITWKISPVNERLQAVSKQLSETVEAPKKKRSESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTVVWIWSTVHCDNFPNDNWHLSSSNPFLQLSSIVYVAVDVVDNCRLCSF
Homology
BLAST of Spg018281 vs. NCBI nr
Match: RVW83588.1 (Ycf3-interacting protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.9e-19
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 0

Query: 170 QRIKNGDRLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAP 229
           QR     RL+     +  T +++   +  VNE         L+ +++++++     VEAP
Sbjct: 88  QREVERRRLLGIEDPDAPTREDLVEALEEVNEGKVPENRIALRMLAEEMTQWPNLEVEAP 147

Query: 230 KKKRSESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVP----TTVVWIWS 289
           KKK S+SLYAKATDTGVDPREA KRLN+DWD+AAEIED D+SD+ EVP    +++  IWS
Sbjct: 148 KKKVSKSLYAKATDTGVDPREAAKRLNMDWDSAAEIEDPDVSDETEVPPAVDSSLAGIWS 207

Query: 290 TVHCDNFPNDNWHLSSSNPFLQLSSI 300
           TV    F  D+ ++ S +P LQ S+I
Sbjct: 208 TVLSHCFSGDHRYICSIDPLLQFSAI 233

BLAST of Spg018281 vs. NCBI nr
Match: RVW62053.1 (Ycf3-interacting protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-19
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 0

Query: 170 QRIKNGDRLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAP 229
           QR     RL+     +  T +++   +  VNE         L+ +++++++     VEAP
Sbjct: 114 QREVERRRLLGIEDPDAPTREDLVEALEEVNEGKVPENRIALRMLAEEMTQWPNVEVEAP 173

Query: 230 KKKRSESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVP----TTVVWIWS 289
           KKK S+SLYAKATDTGVDPREA KRLN+DWD+AAEIED D+SD+ EVP    +++  IWS
Sbjct: 174 KKKVSKSLYAKATDTGVDPREAAKRLNMDWDSAAEIEDPDVSDETEVPPAVDSSLAGIWS 233

Query: 290 TVHCDNFPNDNWHLSSSNPFLQLSSI 300
           TV    F  D+ ++ S +P LQ S+I
Sbjct: 234 TVLSHCFSGDHRYICSIDPVLQFSAI 259

BLAST of Spg018281 vs. NCBI nr
Match: KAF4359846.1 (hypothetical protein G4B88_020367 [Cannabis sativa])

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-18
Identity = 57/135 (42.22%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKKKRSES 236
           RL+   + +G + +++   +  VNE         L+ +++++ +     VEA KKK S+S
Sbjct: 124 RLLGIEESDGPSREDLAAALEEVNEGKIPENRVTLRLLAEEMMQWPNLEVEAEKKKPSKS 183

Query: 237 LYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTVVWIWSTVHCDNFPNDN 296
           LYAKATDTG+DPREA +RLN++WDTAAEIED+D  ++ EVP  +VW+WSTV   +F   +
Sbjct: 184 LYAKATDTGIDPREAARRLNMEWDTAAEIEDSDDKEETEVPKALVWLWSTVLSHSFSGHH 243

Query: 297 WHLSSSNPFLQLSSI 300
              S  +  LQLS +
Sbjct: 244 RRFSCIDSILQLSPV 258

BLAST of Spg018281 vs. NCBI nr
Match: XP_004134512.1 (ycf3-interacting protein 1, chloroplastic isoform X1 [Cucumis sativus] >KGN49548.1 hypothetical protein Csa_003068 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-18
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKKKRSES 236
           RL+   +++  T D++   +  VNE         LQ ++++++       EAPKKKRS+S
Sbjct: 122 RLLGIDEDDAPTRDDLAATLEEVNEGKFPKNRVALQMLAEEMTNWPNLEAEAPKKKRSKS 181

Query: 237 LYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTV 269
           LYAKATDTGV+PREA KRLNIDWDTAAEIEDADLSDDPEVP  V
Sbjct: 182 LYAKATDTGVNPREAAKRLNIDWDTAAEIEDADLSDDPEVPAAV 225

BLAST of Spg018281 vs. NCBI nr
Match: XP_008439416.1 (PREDICTED: ycf3-interacting protein 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-18
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKKKRSES 236
           RL+   +++  T D++   +  VNE         LQ +++++++      EAPKK+RS+S
Sbjct: 122 RLLGIDEDDAPTRDDLAATLEEVNEGKFPKNRVALQMLAEEMTKWPNLEAEAPKKRRSKS 181

Query: 237 LYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTVV 270
           LYAKATDTGV+PREA KRLNIDWDTAAEIEDADL DDPEVP  VV
Sbjct: 182 LYAKATDTGVNPREAAKRLNIDWDTAAEIEDADLGDDPEVPAAVV 226

BLAST of Spg018281 vs. ExPASy Swiss-Prot
Match: B8AAV3 (Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=CEST PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-12
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKKKR--S 236
           RL+     + IT D++   +  VNE         LQ ++K+++E     +EAPKKK    
Sbjct: 157 RLLGIEDPDEITRDDLADALVEVNEGRIPENRVALQLLAKEMTEWPDLEMEAPKKKSKPG 216

Query: 237 ESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDD-PEVPTTV 269
           +S+YAKATDTG+DP  A KRLNIDWD+AA+++D +  DD  EVP+ V
Sbjct: 217 KSVYAKATDTGIDPETAAKRLNIDWDSAADLDDEEEEDDETEVPSAV 263

BLAST of Spg018281 vs. ExPASy Swiss-Prot
Match: Q5VQK9 (Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CEST PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-12
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKKKR--S 236
           RL+     + IT D++   +  VNE         LQ ++K+++E     +EAPKKK    
Sbjct: 157 RLLGIEDPDEITRDDLADALVEVNEGRIPENRVALQLLAKEMTEWPDLEMEAPKKKSKPG 216

Query: 237 ESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDD-PEVPTTV 269
           +S+YAKATDTG+DP  A KRLNIDWD+AA+++D +  DD  EVP+ V
Sbjct: 217 KSVYAKATDTGIDPETAAKRLNIDWDSAADLDDEEEEDDETEVPSAV 263

BLAST of Spg018281 vs. ExPASy Swiss-Prot
Match: E5KCJ8 (Ycf3-interacting protein 1, chloroplastic OS=Nicotiana tabacum OX=4097 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 4.6e-12
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKK-KRSE 236
           RL+    E   T D++   +  +NE         LQ ++++++      VEA K+ K   
Sbjct: 130 RLLGIDDENAPTRDDLAAALEEINEGKVPKDFAALQMLAEEMNSWPNLEVEATKQNKPGR 189

Query: 237 SLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVP 266
           SLYAKATDTG+DP+EA KRL IDWD+AAEI+++  SD+P+VP
Sbjct: 190 SLYAKATDTGIDPKEAAKRLKIDWDSAAEIDESAESDEPDVP 231

BLAST of Spg018281 vs. ExPASy Swiss-Prot
Match: Q9LU01 (Ycf3-interacting protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=Y3IP1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-11
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 214 VEAPKKKRSESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTV 269
           VE  KK+R +S+YAK+TDTG+DP+EA KRLN++WD+AA IE+ D+ D+  V T V
Sbjct: 196 VEVSKKQRGKSMYAKSTDTGIDPKEAAKRLNVEWDSAAAIEEVDVDDEQGVVTKV 250

BLAST of Spg018281 vs. ExPASy TrEMBL
Match: A0A438HGP5 (Ycf3-interacting protein 1, chloroplastic OS=Vitis vinifera OX=29760 GN=Y3IP1_1 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-19
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 0

Query: 170 QRIKNGDRLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAP 229
           QR     RL+     +  T +++   +  VNE         L+ +++++++     VEAP
Sbjct: 88  QREVERRRLLGIEDPDAPTREDLVEALEEVNEGKVPENRIALRMLAEEMTQWPNLEVEAP 147

Query: 230 KKKRSESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVP----TTVVWIWS 289
           KKK S+SLYAKATDTGVDPREA KRLN+DWD+AAEIED D+SD+ EVP    +++  IWS
Sbjct: 148 KKKVSKSLYAKATDTGVDPREAAKRLNMDWDSAAEIEDPDVSDETEVPPAVDSSLAGIWS 207

Query: 290 TVHCDNFPNDNWHLSSSNPFLQLSSI 300
           TV    F  D+ ++ S +P LQ S+I
Sbjct: 208 TVLSHCFSGDHRYICSIDPLLQFSAI 233

BLAST of Spg018281 vs. ExPASy TrEMBL
Match: A0A438FQ39 (Ycf3-interacting protein 1, chloroplastic OS=Vitis vinifera OX=29760 GN=Y3IP1_0 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-19
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 0

Query: 170 QRIKNGDRLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAP 229
           QR     RL+     +  T +++   +  VNE         L+ +++++++     VEAP
Sbjct: 114 QREVERRRLLGIEDPDAPTREDLVEALEEVNEGKVPENRIALRMLAEEMTQWPNVEVEAP 173

Query: 230 KKKRSESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVP----TTVVWIWS 289
           KKK S+SLYAKATDTGVDPREA KRLN+DWD+AAEIED D+SD+ EVP    +++  IWS
Sbjct: 174 KKKVSKSLYAKATDTGVDPREAAKRLNMDWDSAAEIEDPDVSDETEVPPAVDSSLAGIWS 233

Query: 290 TVHCDNFPNDNWHLSSSNPFLQLSSI 300
           TV    F  D+ ++ S +P LQ S+I
Sbjct: 234 TVLSHCFSGDHRYICSIDPVLQFSAI 259

BLAST of Spg018281 vs. ExPASy TrEMBL
Match: A0A7J6ENH0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_020367 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.0e-19
Identity = 57/135 (42.22%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKKKRSES 236
           RL+   + +G + +++   +  VNE         L+ +++++ +     VEA KKK S+S
Sbjct: 124 RLLGIEESDGPSREDLAAALEEVNEGKIPENRVTLRLLAEEMMQWPNLEVEAEKKKPSKS 183

Query: 237 LYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTVVWIWSTVHCDNFPNDN 296
           LYAKATDTG+DPREA +RLN++WDTAAEIED+D  ++ EVP  +VW+WSTV   +F   +
Sbjct: 184 LYAKATDTGIDPREAARRLNMEWDTAAEIEDSDDKEETEVPKALVWLWSTVLSHSFSGHH 243

Query: 297 WHLSSSNPFLQLSSI 300
              S  +  LQLS +
Sbjct: 244 RRFSCIDSILQLSPV 258

BLAST of Spg018281 vs. ExPASy TrEMBL
Match: A0A0A0KJ48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538770 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-18
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKKKRSES 236
           RL+   +++  T D++   +  VNE         LQ ++++++       EAPKKKRS+S
Sbjct: 122 RLLGIDEDDAPTRDDLAATLEEVNEGKFPKNRVALQMLAEEMTNWPNLEAEAPKKKRSKS 181

Query: 237 LYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTV 269
           LYAKATDTGV+PREA KRLNIDWDTAAEIEDADLSDDPEVP  V
Sbjct: 182 LYAKATDTGVNPREAAKRLNIDWDTAAEIEDADLSDDPEVPAAV 225

BLAST of Spg018281 vs. ExPASy TrEMBL
Match: A0A1S3AYR1 (ycf3-interacting protein 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484231 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-18
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 0

Query: 177 RLIKQSQEEGITNDEITWKISPVNE--------RLQAVSKQLSE----TVEAPKKKRSES 236
           RL+   +++  T D++   +  VNE         LQ +++++++      EAPKK+RS+S
Sbjct: 122 RLLGIDEDDAPTRDDLAATLEEVNEGKFPKNRVALQMLAEEMTKWPNLEAEAPKKRRSKS 181

Query: 237 LYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTVV 270
           LYAKATDTGV+PREA KRLNIDWDTAAEIEDADL DDPEVP  VV
Sbjct: 182 LYAKATDTGVNPREAAKRLNIDWDTAAEIEDADLGDDPEVPAAVV 226

BLAST of Spg018281 vs. TAIR 10
Match: AT5G44650.1 (Encodes a chloroplast protein that induces tolerance to multiple environmental stresses and reduces photooxidative damage. )

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-12
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 214 VEAPKKKRSESLYAKATDTGVDPREAGKRLNIDWDTAAEIEDADLSDDPEVPTTV 269
           VE  KK+R +S+YAK+TDTG+DP+EA KRLN++WD+AA IE+ D+ D+  V T V
Sbjct: 196 VEVSKKQRGKSMYAKSTDTGIDPKEAAKRLNVEWDSAAAIEEVDVDDEQGVVTKV 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW83588.12.9e-1944.52Ycf3-interacting protein 1, chloroplastic [Vitis vinifera][more]
RVW62053.13.8e-1944.52Ycf3-interacting protein 1, chloroplastic [Vitis vinifera][more]
KAF4359846.11.9e-1842.22hypothetical protein G4B88_020367 [Cannabis sativa][more]
XP_004134512.12.4e-1855.77ycf3-interacting protein 1, chloroplastic isoform X1 [Cucumis sativus] >KGN49548... [more]
XP_008439416.14.1e-1854.29PREDICTED: ycf3-interacting protein 1, chloroplastic isoform X2 [Cucumis melo][more]
Match NameE-valueIdentityDescription
B8AAV32.7e-1243.93Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic OS=Oryza sativa su... [more]
Q5VQK92.7e-1243.93Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic OS=Oryza sativa su... [more]
E5KCJ84.6e-1243.14Ycf3-interacting protein 1, chloroplastic OS=Nicotiana tabacum OX=4097 PE=1 SV=2[more]
Q9LU013.0e-1158.18Ycf3-interacting protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=Y3I... [more]
Match NameE-valueIdentityDescription
A0A438HGP51.4e-1944.52Ycf3-interacting protein 1, chloroplastic OS=Vitis vinifera OX=29760 GN=Y3IP1_1 ... [more]
A0A438FQ391.8e-1944.52Ycf3-interacting protein 1, chloroplastic OS=Vitis vinifera OX=29760 GN=Y3IP1_0 ... [more]
A0A7J6ENH09.0e-1942.22Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_020367 PE=4 SV=1[more]
A0A0A0KJ481.2e-1855.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538770 PE=4 SV=1[more]
A0A1S3AYR12.0e-1854.29ycf3-interacting protein 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=... [more]
Match NameE-valueIdentityDescription
AT5G44650.12.1e-1258.18Encodes a chloroplast protein that induces tolerance to multiple environmental s... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR33672:SF3YCF3-INTERACTING PROTEIN 1, CHLOROPLASTICcoord: 214..269
IPR040340Chloroplast enhancing stress tolerance proteinPANTHERPTHR33672YCF3-INTERACTING PROTEIN 1, CHLOROPLASTICcoord: 214..269

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018281.1Spg018281.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048564 photosystem I assembly
biological_process GO:0080183 response to photooxidative stress
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane