Spg018250 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018250
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold3: 17729332 .. 17730897 (+)
RNA-Seq Expression	Spg018250
Synteny	Spg018250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTGAGTGACAAAACAAATTTCGAAAATTGTTTCTAAACTGTTGTTCATGATTAGATGTCTTATATGCTTTTTCCTATGAATGATACATGATTTCTATTAAGGGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACAAGCACGTGGTTAATGACTTAATGAAAAGTAGTTGAAACGATATTATTTAAAGTAAAGTATGTATTAGCAAGTACTGTTTAAAGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCAAGGCTATATCGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGATAATGATGATGTCGTGAGTGCTGGGCGGGCCCCATTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTTGATTTGTCATGTTAGTTACGATGTTTTATATAATTGATATGCCTTGCTGAATTTTAATAACATACTTGCGAGTTATTTGAGAAAGCTTTTATCATTACACGTTTATGTTAAACACTTGATTTAACAGATTTATACGTCTAAAGGTTTATCACGTGTTCTGATTTGCAAATCTACAGTTTTTAAAGTTAGTCACTCACTGGGCTTCGTACCTCATTCTTTCAAAATGTTTTCCCACTTTTTAGGTAGAGATCGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAATTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTGTATTGTAAATGTTTTTGTAAGGATTGAAAAATTAACGGTTTGTGTAAGTTCTAGAGGTCGTGGTTGTATAAACCCCATTTGAATATGGTTTTGGTTGTGATATCTATATCCAGTTATTTTCTAACCGAGTTATGTCAGGGTTGCACCTCGTGTATGTTAAAAGGTTTTATGGGATTCCACTGTGTTGTGTTTCATGTAGAATATTTTATATTAAGATTAGTATGTTTATCAGGTTCAACGTTTTAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATTTTCAGTGGGAGGAAAATTACAAAACGAGATTTAAATCAAGTTTTGCTCCTACGTCCCTATATTCACAACGTGAGGTTCATGCTCGGCTTCGAGTCGCCTTAGGAACGACCTCCCTTCGGAAAGTGTTTGCATGAATCAATAACAAGGTGAATGGGAAAATGTCTAAAGTAAGTGGGAGCGGGACACGTGTCAACGTATCCCTCGATCTCCACCCCTAGTTCACACCGTTAGAGTCCTATGATCCGCCTGCAGGTTGTCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACATCGTGA

mRNA sequence

CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAATTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTTGTCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACATCGTGA

Coding sequence (CDS)

CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAATTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTTGTCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACATCGTGA

Protein sequence

PRGNRSSLQTRKLAKTVEIELLVPDTLPTSAESSNSSSSTWVELYIESEGQRVSLEEDDVHWLHAIFRTKLAGGLGGGCPGATIPSEGLIIGFGTS

Homology

[Close]

BLAST of Spg018250 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 5.0e-15
Identity = 53/99 (53.54%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTVEIELLVPDTLPTSAESSNSSSSTWVELYIES------------ 60
           PRGNR +L T KL KTVEIEL VPDTLPTSAESS S+SSTW+ELY ES            
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 61  ---------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGG 79
                    EG    +  DD+ WLHA+F  K AG  GGG
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGG 177

[Close]

BLAST of Spg018250 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-13
Identity = 57/125 (45.60%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVE 60
           PRGNR  LQT +L K                  VEIEL +PDTLPTSAESS S+SSTW+E
Sbjct: 303 PRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLE 362

Query: 61  LYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGGCPGA 88
           LY ES                     EG    +  DDV WLHAIFR K AGG GGG   +
Sbjct: 363 LYFESVHVEMLFYKPSDARAASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPS 422

[Close]

BLAST of Spg018250 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-13
Identity = 57/125 (45.60%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVE 60
           PRGNR  LQT +L K                  VEIEL +PDTLPTSAESS S+SSTW+E
Sbjct: 303 PRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLE 362

Query: 61  LYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGGCPGA 88
           LY ES                     EG    +  DDV WLHAIFR K AGG GGG   +
Sbjct: 363 LYFESVHVEMLFYKPSDARAASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPS 422

[Close]

BLAST of Spg018250 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-13
Identity = 55/116 (47.41%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLPTSAESSNSSSSTWVE 60
           PRGNRSSLQT +L KT                 VEIEL VPDTLPTSAES  S+SSTW+E
Sbjct: 95  PRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

Query: 61  LYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGG 79
           LY E                      EG    +  DDV WLH +FR K+AGG GGG
Sbjct: 155 LYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAGGPGGG 210

[Close]

BLAST of Spg018250 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 54/117 (46.15%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKT---------------VEIELLVPDTLPTSAESSNSSSSTWVELY 60
           PRGNR SLQTR+L KT               V IEL VPD LPTSAESS S+SSTW+ELY
Sbjct: 78  PRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESSGSNSSTWLELY 137

Query: 61  IE------------------------SEGQRVSLEEDDVHWLHAIFRTKLAGGLGGG 79
            E                        S G    +  DDV WLHA+FR K  GG GGG
Sbjct: 138 FESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGG 194

[Close]

BLAST of Spg018250 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15
Identity = 53/99 (53.54%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTVEIELLVPDTLPTSAESSNSSSSTWVELYIES------------ 60
           PRGNR +L T KL KTVEIEL VPDTLPTSAESS S+SSTW+ELY ES            
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 61  ---------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGG 79
                    EG    +  DD+ WLHA+F  K AG  GGG
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGG 177

[Close]

BLAST of Spg018250 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 55/116 (47.41%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLPTSAESSNSSSSTWVE 60
           PRGNRSSLQT +L KT                 VEIEL VPDTLPTSAES  S+SSTW+E
Sbjct: 95  PRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

Query: 61  LYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGG 79
           LY E                      EG    +  DDV WLH +FR K+AGG GGG
Sbjct: 155 LYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAGGPGGG 210

[Close]

BLAST of Spg018250 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 57/125 (45.60%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVE 60
           PRGNR  LQT +L K                  VEIEL +PDTLPTSAESS S+SSTW+E
Sbjct: 303 PRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLE 362

Query: 61  LYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGGCPGA 88
           LY ES                     EG    +  DDV WLHAIFR K AGG GGG   +
Sbjct: 363 LYFESVHVEMLFYKPSDARAASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPS 422

[Close]

BLAST of Spg018250 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 57/125 (45.60%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVE 60
           PRGNR  LQT +L K                  VEIEL +PDTLPTSAESS S+SSTW+E
Sbjct: 303 PRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLE 362

Query: 61  LYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGGCPGA 88
           LY ES                     EG    +  DDV WLHAIFR K AGG GGG   +
Sbjct: 363 LYFESVHVEMLFYKPSDARAASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPS 422

[Close]

BLAST of Spg018250 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 54/117 (46.15%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKT---------------VEIELLVPDTLPTSAESSNSSSSTWVELY 60
           PRGNR SLQTR+L KT               V IEL VPD LPTSAESS S+SSTW+ELY
Sbjct: 78  PRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESSGSNSSTWLELY 137

Query: 61  IE------------------------SEGQRVSLEEDDVHWLHAIFRTKLAGGLGGG 79
            E                        S G    +  DDV WLHA+FR K  GG GGG
Sbjct: 138 FESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGG 194

The following BLAST results are available for this feature:

BLAST of Spg018250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052218.1	5.0e-15	53.54	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
TYK25935.1	2.7e-13	45.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040194.1	2.7e-13	45.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0067117.1	2.7e-13	47.41	hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747...	[more]
KAA0058280.1	5.1e-12	46.15	uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]	[more]

BLAST of Spg018250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg018250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAH6	2.4e-15	53.54	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7VIY9	1.3e-13	47.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T9P7	1.3e-13	45.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000...	[more]
A0A5D3DR18	1.3e-13	45.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032...	[more]
A0A5A7UT17	2.5e-12	46.15	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of Spg018250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018250.1	Spg018250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016779	nucleotidyltransferase activity