Spg018240 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018240
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA ligase
Location	scaffold3: 6235407 .. 6241070 (-)
RNA-Seq Expression	Spg018240
Synteny	Spg018240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACTTGTCGAAATTCTCAGCCCGATACTAACCCAACTGACGGAAGGGAAAACGGACCTCCACGCGCCCTCCAGCTGCAGAAATCTCCGGCGGCGCGTGTGGCTCACAAGCAGCTACTTCCGGCGAACGACGACAGCGATTCGACTCCCCTGACGGCGGCGCTTCTCTTTAGGTGGGTGGTGTCGACAAACAACCCCTCTAATGTGGTGACCCAAATTTCAAACCCTAACCCCACTTGGATGAGAAGAAACCCTAACAGCCAAAGGAAAATTCTAAAACCCTAAAGTGGCTTTGATACCGTATTAAATTACATGGGCTTCCATCTCAAAGTCAATTGGCAATGAGTGGGGTGACCCATGTAGCTTATATATTGTGAGGTCTCCACTAATCTTTTCAATGTGGGATCCTCAACATGCCTCCTCAAGATGGTGCCTCTTTGGGTTCACCATTCTTGGATCGGATCCCAATTTCTTTTCATTGGACCGAATACCCGTTTGGGTTTAATGGGCTCTGATACCATGTTATCAAGATATCGAACATGAGAGAATTCAATATCCTTTCTATACACTAGAGCCAATTATATATAGGCATACATAGAAGCCCTAAACCAATAATGGTAAAATTACAATAAAGGACGAAGACTAATAAGCTACTATATTTACATATATACTATAACAATGGTAACTATTATGCCTTAGGATTTGTTATAGTTGGAAGTCATCTTTGCAGTTTAAAGTTCAAATGAATGGAGGGTTAACTAGGCAGAGGGAGATAAGTGAATGAGTTAAAATCCTGACTTTTATATGAATAAGAGTGATGATACTTTGGTACATGAAATGATACCTATGTGCATAATGCTATTATTTTCAATTCCAGGTTCAGTCCTTTCCTCATGGCTTGTTACGACCCAGACACTGAGGACTTTCAAAGCGTATGTCGTGTTATGTCGGGATTCTCTGATGCATTTTACATTGAGGTAACCAGCTTTTTTTTTTTTTTGAAATAAGGTAACCAGCTTTTTGTTTACTTTAGTTCTTTCTCATATTTGATATACGTCTCTTATCCAAAAAATCATAAGCTTCTTATTGATATCAATCAAATTCATCCACCAAGACAAAGAAACCCACATCAAGATTTGGATTCGTCAATCAAAGAAGAGGAGTTTTTGCATCAACAACCAGCAAATGACAACCAATTAGTCCAACGACAAGGTGGTTTTTATCAACAACCAAACTGGGATTCAAGTGACTACAAAATGAAGAGTGAGTTATCAAGTTTTAATGGAAACTTAGATGTTGAGGATTTTCTCGATTAGATCAAGAATGTGGAGAGTTTTTTCGATTATATGAATACTCCAAGGAAAAGAAGGTTAAACTAGTTGCTTTAAAACTCAAAGGTGGAGCATCTGCTTGGTGGGACCAACTACAAAGCAATTGACATTTTTGTGGAAAAAGAATGATCAAGACTTCGGCCAAGAATGAAAAAAATCCTTAAAGAAAGTTTCTTGCCCATTAACTATGAACATATCCTCTTCAACCAATATCATAATTGTAAGCAGGGTATGAGAACTATGAGCGAGTATACTGAGGAATTCAATCGTTTGGGAGTTCGACTTAATCTTGCCGAAGGAGAACGATATTAGATTGCAAGATATATCTCTGGCTTGAAACAAGACATCCAAGAAAAGGTTGAATTACAACCTTTAGGCTGTTTAACCAAGGCGGTAACATGGGCAAAAAAGATCGAAGGACAATTTGATAAAAGAAAGTAGCCTGAAAAAAAAAATTTGGGAAGCACCAAATAATACTTACAGACGAAATCCCAATGAATTCCAAGTGGGCAGTCCATCCAGCTAGGGGTGATCATCGATCGATCGACATCGATTTTGGGCTCAAACCGACGCCGACCACCGACACGTCGGTTTTAGTCGGTCGGTGGATGTCGGTTTCAAGAGTTCGGTGAAACCAATCGATCAACCACAAACAAATATCGGTCGGTTTCGGTCAGTTTTGGAAGTTCACTGGAGTTGTGAAAATACTAAGAAAAAGCGCGGTTCCGGCGAAGAAAATAATAGAGAGAAAGAGATGAAGAAGAAAAGGAGAACAGACAAGAAAAAAACACATAACAGGTTGTGGTGGTGTTAAGCTCCAGCGAAGAAAAAGCATGGTTCCGGCGAAGAAAATAATAGAGAGAAAGGGATGAAGAAGAAAGAGAGAACGAAGAAGAAAAATGGTTAAGCTCCAATGAAGCAAAAGCATGATTCCGGAAAAGAAAATAATAGAGAGAAAAGAGATGAAGAAGAAAGAGAGAATGGAGAAGAAAAAAAAGTTAAGCTGAGGTGAAGAAAAAGCACGATTCCGACGAGGCGGAGACGATGGTTTTGCCAACAAAGATAAAAAGAGAGAGAAGTGAAACAAGAGAGTGAACGAAGATGGAGAGAAAGTAAGAATATGGAAAGGAAGAAAAGATCTGATGTGAGAGAAAAAGACATAATAAAAAGGTTTTTTTTTAAAAAATAAATAATGATTACCTATAGCTATATAGGTAATAATGACCTATGAAATGGGATTTATGTATGATCATCATGTGTCAGCGGCTGCACAGTAGGTTGCTTTTTCCTTTCCTTTACTTTTTTTTTTTTTAATAAATGAAGGCATATCAGTCGGTTTGGGCCTTTTTAGGCCCACCGACCGTATGACTTAGAAAAACCGACTCCGACTGTAACTTTTAGAAAACCGACCGACCGACCGACGTCAGTTCGGTCGGTTTCGGTCGATCTGATCAGTTTTTCGGTCTACATTGCTCACCCCTACTTCCAGCAACCAAAATTTGAAGGGTAAGGAAGAAAAAACAACCAAGAACTCTCAAGATCCAAAAGGCTCAGACATGGTGACCAGGTAAACTCAAAATCAATACACAAGACCAAATTTGGGCAAGTGTAGAACATTTGTCTAATGAGTGTCATTTGAGAAGAGCGGTTGCTGTAATTGATGAAAATAATCAAGATGATGATGGAGATAAAGAACAGTGGGAAGAAGATGTTGTATATATTGAACCGGATGATGGAGAACAACTTTCTTGCATCATTCAACGAGTTCTACTTACTCCTAAATTTGATACGCATCCTCAAAGACATTGTTTGTTTCAAACAAGGTGTACAATCAATGGAAAGATTTGTAATGTGATTATAGGTCGTGGGAGTAGTGAAAATATTGTTTCTCAAAAACTTGTCAACACACTCGTAATCTCAAAGTTGATCCACATCCAAATCCATACAAGGTAAGTTGGATTAAGAAGGGAGGTGAAGCAACAGTAAATTCAATTTGTACGGTATCCCTATCTATCGAAAATTACTACAAAGACCAGATAATTTATGATGTTTTGGAAATGGATCTGTCACATTTTACTAAGAAGACCATGACAGTATGATCTCCAAGCAATCCATAAAGGGAGAGAAAACACATATGAATTTCTTTGGATGGGAATAACGATAGTATTGATGCCTTGCACAGACATTAGTGACAAAAAGGGAGCCAAAGACAACTCAAAGGTATTTAATATATTAGTTTGTTTTAAAAAATTAAAGCCACGTTAACAATCCATTAGTAATCAACGGAAAAATAGATGGAGGGACTGAAATGAAACGAAATTCAAACCTCAAGGACTAAATTGTCGAGTTTGAAAACTCAAAGACCAAAATGAAACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTTTCCAATAATTTTTTATAATAAAAAATCATTGTCACGTCAGCAATCAGTTAAATATTAACGGAAAATTGGATGAAGGGACTAAAATGAAACAAATCCTAACCTCAGGGGCTAAATTGTCGAGTTTGAAAACTTAGGGACTAAAGTGAAACCTAACTCAAACCTCAAGGACCAAAAGTGTATTTTTTCCAAAAAAGAAATACATGAGAACCACTTACTAGGACTAGGGTTCCAAATATGAGAGCTAGAGAAGAAGGGCTCCTAAAGTTGGAAGGAACATAAATGATATCTCGAAGAGGACAAATGGTATAAACAAGAAATTAAGAACCAAAGGGATGGTATCCTCCCAAAATTAAGCATCCACCCCAAGTTTTGAACAAAGTGCGAGAAAGAAGGAAGCCCAAAGGAAATAGCTTTCACCACCTCTAAAAACACAGGCTAGAGAAGGGCTCCTAAAGTGCGCCCTGAGATTTGTCGCCTTAGAGTGCGCCTTGCGCTTTGGAAACACTATAGTGGCTAAAGAGTTTTGTAATTACTCGTGTGGACTTATTTACAGCTGGTGGTTCTGGCTCTTGTTTTCTTTGGGCTATTTTTTTTCTGTATGTCTTCCTTGTTTTCTTTCATGTTTTTTTACTGAAAGCATGGTTTCTTAAATTAATTAATTAAAAAAAATGATAGAGGAAATTGTCTGATTATTTCTTGTGTGATAGTAAAGAAAATTCAGAAAAATTGACGGAAGAATTTGAGAAAGATTTTAGGAAATTTATCAGGAGAACGAAATCAGTGGTGGAAGCTAAAATGGAAACTCAACCCTTGTATACTGACGAAGAGAGATCATTTCAGAAATGTACGATAGTATGGCTTAAAGTTGGTGACGAAAATTCTGCATCTTGCAAATTTCTTGGGGGTAAGAAAAATAAGGAATTTTATCTCCGAAGTGGTGACGGAGGAAGGGGCTAGTCTAGTGGAGGATAAGGAACTTGAAAAGGAGACTTTAAAGTTTTATTAAGATGATTTCAAGAGGTTCGTGCCATAAATTGGGTTTCTATCAGTAATCAGATCTGCCTTTTGTGGAAGATGAGGTGGTGAATGCTCCATATTAGATTGGATAAATCTAAACCACCAAGCCTGAAGGGTTTTCATTTTGTTGTTTAGAAAATTCTGGAGGGTTACAAAAGTTTCATTTGATGAAAGATTTTAGGCCACAAAGTATGATATTTCTGTTTACACCTTTCTCTCTCTGTGATTATAGCCTCTTATTTTAATGGAAGTTTCATATGTTATTATTCTTCTTAAGCATGATAGCTATGATGTTCCTTTTTACACCTTTCATGGTTCATGGTGGTATATGTTTTTATTGAGCTGCAGATGAAAGAATATTTTTCTGGGGATAAGATTTTGTCTATAAAGCCAGCTTACTATCAAACTGCTGAGGTTCCTGATATGTGGTTCTTGCCAGAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTGTCACCAGTTCACCAGGCTGCTGTTGGTTTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATCCGTTCGCTTCCTGATAGAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCCGAAATGTTTAACTCTCAGACGAGGAAGATGGATGTTGCATCAGGAGATTGAGCTTATTTTTCATCAGCTCTTTGGACAGGTTGCTTTTGGCATTGCTACATGTCAACTTGTAAATTTTAGAAAGATGGGTTTTAGATAGTCTTCATGTATTTTGTCTTCCCCCTGTAAGGCTGTAAATCAATTAGAATAGGGGCTGATTCGGACTATGGAGTTTAGGCGTAAATTTCTTAGTTATATTCTGTATATAAAACCGATCGTTTCAAGTTTTTCAGTTAAGCACTGCACTTGGTGATTCTC

mRNA sequence

ATGCAGACTTGTCGAAATTCTCAGCCCGATACTAACCCAACTGACGGAAGGGAAAACGGACCTCCACGCGCCCTCCAGCTGCAGAAATCTCCGGCGGCGCGTGTGGCTCACAAGCAGCTACTTCCGGCGAACGACGACAGCGATTCGACTCCCCTGACGGCGGCGCTTCTCTTTAGGTTCAGTCCTTTCCTCATGGCTTGTTACGACCCAGACACTGAGGACTTTCAAAGCGTATGTCGTGTTATGTCGGGATTCTCTGATGCATTTTACATTGAGTGTCATTTGAGAAGAGCGGTTGCTGTAATTGATGAAAATAATCAAGATGATGATGGAGATAAAGAACAGTGGGAAGAAGATGTTGTATATATTGAACCGGATGATGGAGAACAACTTTCTTGCATCATTCAACGAGTTCTACTTACTCCTAAATTTGATACGCATCCTCAAAGACATTACATTAGTGACAAAAAGGGAGCCAAAGACAACTCAAAGGCTAGAGAAGGGCTCCTAAAGTGCGCCCTGAGATTTGTCGCCTTAGAGTGCGCCTTGCGCTTTGGAAACACTATAGTGGCTAAAGAGTTTTGTAATTACTCGTGTGGACTTATTTACAGCTGGTGGTTCTGGCTCTTGTTTTCTTTGGGCTATTTTTTTTCTATGAAAGAATATTTTTCTGGGGATAAGATTTTGTCTATAAAGCCAGCTTACTATCAAACTGCTGAGGTTCCTGATATGTGGTTCTTGCCAGAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTGTCACCAGTTCACCAGGCTGCTGTTGGTTTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATCCGTTCGCTTCCTGATAGAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCCGAAATGTTTAACTCTCAGACGAGGAAGATGGATGTTGCATCAGGAGATTGA

Coding sequence (CDS)

ATGCAGACTTGTCGAAATTCTCAGCCCGATACTAACCCAACTGACGGAAGGGAAAACGGACCTCCACGCGCCCTCCAGCTGCAGAAATCTCCGGCGGCGCGTGTGGCTCACAAGCAGCTACTTCCGGCGAACGACGACAGCGATTCGACTCCCCTGACGGCGGCGCTTCTCTTTAGGTTCAGTCCTTTCCTCATGGCTTGTTACGACCCAGACACTGAGGACTTTCAAAGCGTATGTCGTGTTATGTCGGGATTCTCTGATGCATTTTACATTGAGTGTCATTTGAGAAGAGCGGTTGCTGTAATTGATGAAAATAATCAAGATGATGATGGAGATAAAGAACAGTGGGAAGAAGATGTTGTATATATTGAACCGGATGATGGAGAACAACTTTCTTGCATCATTCAACGAGTTCTACTTACTCCTAAATTTGATACGCATCCTCAAAGACATTACATTAGTGACAAAAAGGGAGCCAAAGACAACTCAAAGGCTAGAGAAGGGCTCCTAAAGTGCGCCCTGAGATTTGTCGCCTTAGAGTGCGCCTTGCGCTTTGGAAACACTATAGTGGCTAAAGAGTTTTGTAATTACTCGTGTGGACTTATTTACAGCTGGTGGTTCTGGCTCTTGTTTTCTTTGGGCTATTTTTTTTCTATGAAAGAATATTTTTCTGGGGATAAGATTTTGTCTATAAAGCCAGCTTACTATCAAACTGCTGAGGTTCCTGATATGTGGTTCTTGCCAGAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTGTCACCAGTTCACCAGGCTGCTGTTGGTTTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATCCGTTCGCTTCCTGATAGAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCCGAAATGTTTAACTCTCAGACGAGGAAGATGGATGTTGCATCAGGAGATTGA

Protein sequence

MQTCRNSQPDTNPTDGRENGPPRALQLQKSPAARVAHKQLLPANDDSDSTPLTAALLFRFSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEEDVVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVALECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTAEVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKMDVASGD

Homology

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BLAST of Spg018240 vs. NCBI nr
Match: XP_038878216.1 (DNA ligase 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 3.8e-51
Identity = 131/292 (44.86%), Postives = 140/292 (47.95%), Query Frame = 0


Query: 34   RVAHKQLLPANDDSDSTPLTA-----ALLFRFSPFLMACYDPDTEDFQSVCRVMSGFSDA 93
            +V    L   ND  D  P+ A       +  FSPFLMACY+PDTE+FQSVCRVMSGFSDA
Sbjct: 1279 KVKRDYLEGLNDSLDLVPIGAWHGNGRKMGWFSPFLMACYNPDTEEFQSVCRVMSGFSDA 1338

Query: 94   FYIECHLRRAVAVIDENNQDDDGDKEQWEEDVVYIEPDDGEQLSCIIQRVLLTPKFDTHP 153
            FYI+                                                        
Sbjct: 1339 FYIK-------------------------------------------------------- 1398

Query: 154  QRHYISDKKGAKDNSKAREGLLKCALRFVALECALRFGNTIVAKEFCNYSCGLIYSWWFW 213
                                                                        
Sbjct: 1399 ------------------------------------------------------------ 1444

Query: 214  LLFSLGYFFSMKEYFSGDKILSIKPAYYQTAEVPDMWFLPEVVWEIRGADLTVSPVHQAA 273
                      MKE+FSGD IL  KPAYYQTAEVPDMWFLP+ VWEIRGADLTVSPVHQAA
Sbjct: 1459 ----------MKEFFSGDNILCKKPAYYQTAEVPDMWFLPQFVWEIRGADLTVSPVHQAA 1444

Query: 274  VGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKMDVASGD 321
            VGLVHPSRGISIRFPRFIRS+PDRNPEECSTA DIAEMFNSQTRKMDVASGD
Sbjct: 1519 VGLVHPSRGISIRFPRFIRSVPDRNPEECSTAADIAEMFNSQTRKMDVASGD 1444

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BLAST of Spg018240 vs. NCBI nr
Match: XP_008444061.1 (PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 6.0e-49
Identity = 122/260 (46.92%), Postives = 128/260 (49.23%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            FSPFLMACY+P T +FQSVCRVMSGFSDAFYIE                           
Sbjct: 1271 FSPFLMACYNPGTGEFQSVCRVMSGFSDAFYIE--------------------------- 1330

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1331 ------------------------------------------------------------ 1390

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE+FSGDKIL  KP YY+TA
Sbjct: 1391 ---------------------------------------MKEFFSGDKILCKKPVYYRTA 1404

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            EVPDMWFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECST
Sbjct: 1451 EVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECST 1404

Query: 300  ATDIAEMFNSQTRKMDVASG 320
            ATDIAEMFNSQTRKMDVASG
Sbjct: 1511 ATDIAEMFNSQTRKMDVASG 1404

[Close]

BLAST of Spg018240 vs. NCBI nr
Match: XP_008444062.1 (PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 6.0e-49
Identity = 122/260 (46.92%), Postives = 128/260 (49.23%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            FSPFLMACY+P T +FQSVCRVMSGFSDAFYIE                           
Sbjct: 1270 FSPFLMACYNPGTGEFQSVCRVMSGFSDAFYIE--------------------------- 1329

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1330 ------------------------------------------------------------ 1389

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE+FSGDKIL  KP YY+TA
Sbjct: 1390 ---------------------------------------MKEFFSGDKILCKKPVYYRTA 1403

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            EVPDMWFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECST
Sbjct: 1450 EVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECST 1403

Query: 300  ATDIAEMFNSQTRKMDVASG 320
            ATDIAEMFNSQTRKMDVASG
Sbjct: 1510 ATDIAEMFNSQTRKMDVASG 1403

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BLAST of Spg018240 vs. NCBI nr
Match: KAG5535353.1 (hypothetical protein RHGRI_023200 [Rhododendron griersonianum])

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-47
Identity = 114/259 (44.02%), Postives = 140/259 (54.05%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            +SPFL+ACY+PDT++FQSVCRVMSGFSD+FYIE +                         
Sbjct: 1329 YSPFLVACYEPDTQEFQSVCRVMSGFSDSFYIEVN------------------------- 1388

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                           + R +L                                 L+F+ +
Sbjct: 1389 ------------QIFVARAIL---------------------------------LKFLKM 1448

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                    T+V                            MKE+FSGDK+LS KP YYQTA
Sbjct: 1449 --------TLV---------------------------QMKEFFSGDKMLSRKPLYYQTA 1482

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            EVPDMWF PE+VWEIRGAD TVSPVH+AA+GLVHPSRGISIRFPRF+RS+ DR PEECST
Sbjct: 1509 EVPDMWFSPELVWEIRGADFTVSPVHKAAIGLVHPSRGISIRFPRFVRSVSDRKPEECST 1482

Query: 300  ATDIAEMFNSQTRKMDVAS 319
            +TD+A+MF+SQTRKMDV++
Sbjct: 1569 STDVADMFHSQTRKMDVST 1482

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BLAST of Spg018240 vs. NCBI nr
Match: XP_022158502.1 (DNA ligase 6-like isoform X2 [Momordica charantia])

HSP 1 Score: 200.3 bits (508), Expect = 2.5e-47
Identity = 122/262 (46.56%), Postives = 127/262 (48.47%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            FSPFLMACY+PD E+FQSVCRVMSGFSDAFYIE                           
Sbjct: 1291 FSPFLMACYNPDNEEFQSVCRVMSGFSDAFYIE--------------------------- 1350

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1351 ------------------------------------------------------------ 1410

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE+FSGDKIL  KP YY+TA
Sbjct: 1411 ---------------------------------------MKEFFSGDKILCKKPPYYRTA 1426

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            E PDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRS+ DRNPEECST
Sbjct: 1471 EAPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSVRDRNPEECST 1426

Query: 300  ATDIAEMFNSQTRKMD-VASGD 321
            ATDI  MFNSQTRKMD VASGD
Sbjct: 1531 ATDIVGMFNSQTRKMDVVASGD 1426

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BLAST of Spg018240 vs. ExPASy Swiss-Prot
Match: F4HPZ9 (DNA ligase 6 OS=Arabidopsis thaliana OX=3702 GN=LIG6 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.8e-43
Identity = 103/259 (39.77%), Postives = 120/259 (46.33%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            +SPFLMAC++P+TE+FQSVCRVMSGFSDAFYIE                           
Sbjct: 1262 YSPFLMACFNPETEEFQSVCRVMSGFSDAFYIE--------------------------- 1321

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1322 ------------------------------------------------------------ 1381

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE++S DKIL+ KP YY+T 
Sbjct: 1382 ---------------------------------------MKEFYSEDKILAKKPPYYRTG 1394

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            E PDMWF  EVVWEIRGAD TVSPVH A++GLVHPSRGIS+RFPRFI  + DRNPEECST
Sbjct: 1442 ETPDMWFSAEVVWEIRGADFTVSPVHSASLGLVHPSRGISVRFPRFISKVTDRNPEECST 1394

Query: 300  ATDIAEMFNSQTRKMDVAS 319
            ATDIAEMF++QTRKM++ S
Sbjct: 1502 ATDIAEMFHAQTRKMNITS 1394

[Close]

BLAST of Spg018240 vs. ExPASy Swiss-Prot
Match: Q42572 (DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 7.5e-18
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 227 KILSIKPAYYQTAEV--PDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPR 286
           ++++    YY+  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR
Sbjct: 691 QVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPR 750

Query: 287 FIRSLPDRNPEECSTATDIAEMFNSQ 311
            +R   D+ PEE +++  IA+++ +Q
Sbjct: 751 LLRVREDKKPEEATSSEQIADLYQAQ 776

HSP 2 Score: 46.6 bits (109), Expect = 6.1e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 60  FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIE 93
           +  FL+ACYD D E+FQS+C++ +GFSDA   E
Sbjct: 651 YGAFLLACYDVDKEEFQSICKIGTGFSDAMLDE 683

[Close]

BLAST of Spg018240 vs. ExPASy Swiss-Prot
Match: Q9W1H4 (DNA ligase 1 OS=Drosophila melanogaster OX=7227 GN=DNAlig1 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 3.7e-17
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 223 FSGDKILSIKPAYYQ--TAEVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISI 282
           F G  + S   +YY+   +  PD WF P  VWE++ ADL++SP+H+AA+G+V   RGIS+
Sbjct: 638 FLGKHVTSAAKSYYRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISL 697

Query: 283 RFPRFIRSLPDRNPEECSTATDIAEMFNSQ 311
           RFPRFIR   D+N E  + A  +A M+ SQ
Sbjct: 698 RFPRFIRIRDDKNSENATDANQVAHMYQSQ 727

[Close]

BLAST of Spg018240 vs. ExPASy Swiss-Prot
Match: P51892 (DNA ligase 1 OS=Xenopus laevis OX=8355 GN=lig1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.7e-17
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 223  FSGDKILSIKPAYYQ--TAEVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISI 282
            F  D ++    +YY+  +A  PD WF P  VWE++ ADL++SPVH+AA+GLV   +GIS+
Sbjct: 964  FLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSISPVHKAALGLVEDQKGISL 1023

Query: 283  RFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKMDVAS 319
            RFPRF+R   D+ PEE + +  +A+++  Q +  + +S
Sbjct: 1024 RFPRFLRIRDDKKPEESTNSFQVADLYRKQQQIQNTSS 1061

[Close]

BLAST of Spg018240 vs. ExPASy Swiss-Prot
Match: Q6L195 (DNA ligase OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) OX=263820 GN=lig PE=3 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 3.7e-17
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 225 GDKILSIKPAYYQTAEVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPR 284
           GDKI+  KPA   ++  PD W  P +V EIRGA++TVSPVH  A+ ++    G+++RFPR
Sbjct: 493 GDKIVEKKPARVNSSMEPDHWIYPSLVLEIRGAEITVSPVHTCAMNIIEKGSGLALRFPR 552

Query: 285 FIRSLPDRNPEECSTATDIAEMFNSQTRKMD 316
            I+   D+ PE+ +T  +I EM+ +Q + ++
Sbjct: 553 LIKPRDDKKPEDATTTNEIIEMYKAQKKVIE 583

[Close]

BLAST of Spg018240 vs. ExPASy TrEMBL
Match: A0A1S3B9K2 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.9e-49
Identity = 122/260 (46.92%), Postives = 128/260 (49.23%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            FSPFLMACY+P T +FQSVCRVMSGFSDAFYIE                           
Sbjct: 1271 FSPFLMACYNPGTGEFQSVCRVMSGFSDAFYIE--------------------------- 1330

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1331 ------------------------------------------------------------ 1390

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE+FSGDKIL  KP YY+TA
Sbjct: 1391 ---------------------------------------MKEFFSGDKILCKKPVYYRTA 1404

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            EVPDMWFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECST
Sbjct: 1451 EVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECST 1404

Query: 300  ATDIAEMFNSQTRKMDVASG 320
            ATDIAEMFNSQTRKMDVASG
Sbjct: 1511 ATDIAEMFNSQTRKMDVASG 1404

[Close]

BLAST of Spg018240 vs. ExPASy TrEMBL
Match: A0A1S3BA94 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.9e-49
Identity = 122/260 (46.92%), Postives = 128/260 (49.23%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            FSPFLMACY+P T +FQSVCRVMSGFSDAFYIE                           
Sbjct: 1270 FSPFLMACYNPGTGEFQSVCRVMSGFSDAFYIE--------------------------- 1329

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1330 ------------------------------------------------------------ 1389

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE+FSGDKIL  KP YY+TA
Sbjct: 1390 ---------------------------------------MKEFFSGDKILCKKPVYYRTA 1403

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            EVPDMWFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECST
Sbjct: 1450 EVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECST 1403

Query: 300  ATDIAEMFNSQTRKMDVASG 320
            ATDIAEMFNSQTRKMDVASG
Sbjct: 1510 ATDIAEMFNSQTRKMDVASG 1403

[Close]

BLAST of Spg018240 vs. ExPASy TrEMBL
Match: A0A6J1DXE4 (DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 122/262 (46.56%), Postives = 127/262 (48.47%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            FSPFLMACY+PD E+FQSVCRVMSGFSDAFYIE                           
Sbjct: 1291 FSPFLMACYNPDNEEFQSVCRVMSGFSDAFYIE--------------------------- 1350

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1351 ------------------------------------------------------------ 1410

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE+FSGDKIL  KP YY+TA
Sbjct: 1411 ---------------------------------------MKEFFSGDKILCKKPPYYRTA 1426

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            E PDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRS+ DRNPEECST
Sbjct: 1471 EAPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSVRDRNPEECST 1426

Query: 300  ATDIAEMFNSQTRKMD-VASGD 321
            ATDI  MFNSQTRKMD VASGD
Sbjct: 1531 ATDIVGMFNSQTRKMDVVASGD 1426

[Close]

BLAST of Spg018240 vs. ExPASy TrEMBL
Match: A0A6J1E130 (DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 122/262 (46.56%), Postives = 127/262 (48.47%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            FSPFLMACY+PD E+FQSVCRVMSGFSDAFYIE                           
Sbjct: 1295 FSPFLMACYNPDNEEFQSVCRVMSGFSDAFYIE--------------------------- 1354

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1355 ------------------------------------------------------------ 1414

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE+FSGDKIL  KP YY+TA
Sbjct: 1415 ---------------------------------------MKEFFSGDKILCKKPPYYRTA 1430

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            E PDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRS+ DRNPEECST
Sbjct: 1475 EAPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSVRDRNPEECST 1430

Query: 300  ATDIAEMFNSQTRKMD-VASGD 321
            ATDI  MFNSQTRKMD VASGD
Sbjct: 1535 ATDIVGMFNSQTRKMDVVASGD 1430

[Close]

BLAST of Spg018240 vs. ExPASy TrEMBL
Match: A0A6A2WAQ2 (DNA ligase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117034pilonHSYRG00364 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.9e-47
Identity = 115/257 (44.75%), Postives = 126/257 (49.03%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            +SPFLMACY+PDTEDFQSVCRVMSGFSD+FY E                           
Sbjct: 1277 YSPFLMACYNPDTEDFQSVCRVMSGFSDSFYKE--------------------------- 1336

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1337 ------------------------------------------------------------ 1396

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE+FSGD+IL+ KPAYYQTA
Sbjct: 1397 ---------------------------------------MKEFFSGDRILAKKPAYYQTA 1407

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            EVPDMWF PE+VWEIRGAD TVSPVHQAA+GLVHPSRGIS+RFPRFIRS+ DRNPEECST
Sbjct: 1457 EVPDMWFTPELVWEIRGADFTVSPVHQAAIGLVHPSRGISMRFPRFIRSVTDRNPEECST 1407

Query: 300  ATDIAEMFNSQTRKMDV 317
            ATDIAEMF+SQTRKMDV
Sbjct: 1517 ATDIAEMFHSQTRKMDV 1407

[Close]

BLAST of Spg018240 vs. TAIR 10
Match: AT1G66730.1 (DNA LIGASE 6 )

HSP 1 Score: 175.6 bits (444), Expect = 6.2e-44
Identity = 103/259 (39.77%), Postives = 120/259 (46.33%), Query Frame = 0


Query: 60   FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIECHLRRAVAVIDENNQDDDGDKEQWEED 119
            +SPFLMAC++P+TE+FQSVCRVMSGFSDAFYIE                           
Sbjct: 1262 YSPFLMACFNPETEEFQSVCRVMSGFSDAFYIE--------------------------- 1321

Query: 120  VVYIEPDDGEQLSCIIQRVLLTPKFDTHPQRHYISDKKGAKDNSKAREGLLKCALRFVAL 179
                                                                        
Sbjct: 1322 ------------------------------------------------------------ 1381

Query: 180  ECALRFGNTIVAKEFCNYSCGLIYSWWFWLLFSLGYFFSMKEYFSGDKILSIKPAYYQTA 239
                                                   MKE++S DKIL+ KP YY+T 
Sbjct: 1382 ---------------------------------------MKEFYSEDKILAKKPPYYRTG 1394

Query: 240  EVPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECST 299
            E PDMWF  EVVWEIRGAD TVSPVH A++GLVHPSRGIS+RFPRFI  + DRNPEECST
Sbjct: 1442 ETPDMWFSAEVVWEIRGADFTVSPVHSASLGLVHPSRGISVRFPRFISKVTDRNPEECST 1394

Query: 300  ATDIAEMFNSQTRKMDVAS 319
            ATDIAEMF++QTRKM++ S
Sbjct: 1502 ATDIAEMFHAQTRKMNITS 1394

[Close]

BLAST of Spg018240 vs. TAIR 10
Match: AT1G49250.1 (ATP-dependent DNA ligase )

HSP 1 Score: 95.5 bits (236), Expect = 8.2e-20
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 227 KILSIKPAYYQTAE--VPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPR 286
           K+++    YYQ      PD+W  P  VWE++ ADLTVSPV++ A+G+V P +GIS+RFPR
Sbjct: 558 KVIATPKQYYQVDNDLNPDVWLEPTEVWEVKAADLTVSPVYREAIGIVDPDKGISLRFPR 617

Query: 287 FIRSLPDRNPEECSTATDIAEMFNSQ 311
            +R   D+NPEE +T+  IAEM+ +Q
Sbjct: 618 LVRIRKDKNPEEATTSDQIAEMYQAQ 643

HSP 2 Score: 41.6 bits (96), Expect = 1.4e-03
Identity = 15/28 (53.57%), Postives = 22/28 (78.57%), Query Frame = 0


Query: 60  FSPFLMACYDPDTEDFQSVCRVMSGFSD 88
           F  +L+ACYD D E+FQS+C++ + FSD
Sbjct: 518 FGAYLLACYDVDKEEFQSICKIGTEFSD 545

[Close]

BLAST of Spg018240 vs. TAIR 10
Match: AT1G08130.1 (DNA ligase 1 )

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-19
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 227 KILSIKPAYYQTAEV--PDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPR 286
           ++++    YY+  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR
Sbjct: 691 QVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPR 750

Query: 287 FIRSLPDRNPEECSTATDIAEMFNSQ 311
            +R   D+ PEE +++  IA+++ +Q
Sbjct: 751 LLRVREDKKPEEATSSEQIADLYQAQ 776

HSP 2 Score: 46.6 bits (109), Expect = 4.4e-05
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 60  FSPFLMACYDPDTEDFQSVCRVMSGFSDAFYIE 93
           +  FL+ACYD D E+FQS+C++ +GFSDA   E
Sbjct: 651 YGAFLLACYDVDKEEFQSICKIGTGFSDAMLDE 683

The following BLAST results are available for this feature:

BLAST of Spg018240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878216.1	3.8e-51	44.86	DNA ligase 6-like isoform X1 [Benincasa hispida]	[more]
XP_008444061.1	6.0e-49	46.92	PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]	[more]
XP_008444062.1	6.0e-49	46.92	PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo]	[more]
KAG5535353.1	1.9e-47	44.02	hypothetical protein RHGRI_023200 [Rhododendron griersonianum]	[more]
XP_022158502.1	2.5e-47	46.56	DNA ligase 6-like isoform X2 [Momordica charantia]	[more]

BLAST of Spg018240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HPZ9	8.8e-43	39.77	DNA ligase 6 OS=Arabidopsis thaliana OX=3702 GN=LIG6 PE=2 SV=1	[more]
Q42572	7.5e-18	44.19	DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2	[more]
Q9W1H4	3.7e-17	46.67	DNA ligase 1 OS=Drosophila melanogaster OX=7227 GN=DNAlig1 PE=1 SV=2	[more]
P51892	3.7e-17	41.84	DNA ligase 1 OS=Xenopus laevis OX=8355 GN=lig1 PE=2 SV=1	[more]
Q6L195	3.7e-17	41.76	DNA ligase OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / ...	[more]

BLAST of Spg018240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9K2	2.9e-49	46.92	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1	[more]
A0A1S3BA94	2.9e-49	46.92	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1	[more]
A0A6J1DXE4	1.2e-47	46.56	DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1	[more]
A0A6J1E130	1.2e-47	46.56	DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1	[more]
A0A6A2WAQ2	7.9e-47	44.75	DNA ligase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117034pilonHSYRG00364 PE...	[more]

BLAST of Spg018240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66730.1	6.2e-44	39.77	DNA LIGASE 6	[more]
AT1G49250.1	8.2e-20	48.84	ATP-dependent DNA ligase	[more]
AT1G08130.1	5.3e-19	44.19	DNA ligase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012309	DNA ligase, ATP-dependent, C-terminal	PFAM	PF04679	DNA_ligase_A_C	coord: 239..291 e-value: 2.9E-7 score: 31.0 coord: 60..126 e-value: 5.0E-7 score: 30.2
None	No IPR available	GENE3D	2.40.50.140		coord: 211..318 e-value: 1.4E-25 score: 92.2
None	No IPR available	GENE3D	2.40.50.140		coord: 53..185 e-value: 3.7E-12 score: 48.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR45674	DNA LIGASE 1/3 FAMILY MEMBER	coord: 60..95
None	No IPR available	PANTHER	PTHR45674:SF9	DNA LIGASE 3	coord: 219..316
None	No IPR available	PANTHER	PTHR45674:SF9	DNA LIGASE 3	coord: 60..95
None	No IPR available	PANTHER	PTHR45674	DNA LIGASE 1/3 FAMILY MEMBER	coord: 219..316
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 60..104
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 230..310

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018240.1	Spg018240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006266	DNA ligation
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003910	DNA ligase (ATP) activity