Spg018233 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018233
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold3: 20226930 .. 20228581 (-)
RNA-Seq Expression	Spg018233
Synteny	Spg018233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAACGAGAGCAAGAATAGAGCGGGAAAGTGAGGAAGAAGAGGTACCTGTTACCCCCGAAGTACAGAAAGTGAAAGCGAAGAAAAAGAAAACGCCAGAGGAAAAAGAAGCCAAAAGAAGGAGAAGGCAGCAGAGGGCTGAGGTTCAAGAAGCTGTTCAGAAGGCAGCGGAGGACGTTGCTGCCGCTGAAGAAGGCAATCTGAGGGAACCTGAAGTACAAAACCCAGAGCAGACTGAGCCGAGAGTTACGGATACAGAGGAAGTGCGAGAGGAAAATACAGAGGAAGGTCAAGAAAAGCAGACTGAGGATGTGCAAGAAGAACAGACAGAGGTTGCGCCTGAAAAAGGTAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGTAATCATGCCAGAAGTGCCACGACGTCGCTGCGGGAAGCGAAAGGCCGATCGTGTCAGAGTAGTCCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAAAGAGAGAGGAACAGGAGAAAAAAGATGTCGAGGATAAAGAAGGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCGAAGGGCAGACAAGGGCAAGAGTGTTGCTGCGGCACCGGAGGAACCTGACGAGATAGAGGAGCCACAGTTGTTGTATGTTCGCTGCGTCAACAATCTTGTCAGAGCAAAATATGCTGAGCTGCTGAAGAGAGACTTCCTGATCGAGAGAGGATTTAGTGGTGATCTTCCACATTTTCTGAGGGTCGACATTACGAACCACGGTTGGGAATTATTTTGTTCAAAGCCTAAATCTGTGAGCGAATTTTATGCAAATATTGACAAAGAAGACGGTTTCCAAGTGATCGTTTGAGGTGTTGAGGTAGACTGGAGTCCTGGTGCTATTAACGCACTGTATAACCTTCAAGATTTCCCACATGCAGGATACAATGAGATGGCTGTGGCGCCATCTAATGAGCAATTGAGCGATGCTGTGAGGGAAGTTGGCGTTTAAGGGGCGCAGTGGAGACTTTCGAAAACTGAGAAAAGAACGTTTCAGTCAGCCTATCTAAAGAGGGAAGCAAATACATGGATGGGATTTATCAAACAAAGGTTGCTTCCAACGACTCATGACTCGACGGTTTCTAGGGAACGGGTTCTTCTGGCGTTCGCGATTTTGAGGTCTCTCAGTATTGATGTGGGTAAGATTATTGCTAGTGAAATATCTGGATGTTGGAAAAAGAAAGTGGGAAGCTGGTTTTCCTGAATACGATTACAATGCTTTGCAAGCGAGCAGGGGTTCCGGAGAATGAAGTAGATGTCATATTATTTGACAAGGGAATTATTGATACGCCTAACTTGGCACGGCTTCAGCGTACGCAAGAGGCACACCAGGGTGGGCTTATCTATGGCATCAACACGATTTTAGAACAACTAGCACTGTCGGCCAGCAGGTAGGAGTTTGCCGAGAGGCAAGCTTTAACCTTCTAGAACTATGTTAAAAGTCGTGATGTCAATCTGAAGAAGGCGCTACAGGAAAATTTTTCCAAACCATATCTAGCCCTTCCAGCATTCCCTGAGGAATTGTTTAACCCCTGGATTCCGCCCCCACCTGTGGAAAGAGAAGAAGATGATGATGAAGAGTAG

mRNA sequence

ATGGCAAAAACGAGAGCAAGAATAGAGCGGGAAAGTGAGGAAGAAGAGGTACCTGTTACCCCCGAAGTACAGAAAGTGAAAGCGAAGAAAAAGAAAACGCCAGAGGAAAAAGAAGCCAAAAGAAGGAGAAGGCAGCAGAGGGCTGAGGTTCAAGAAGCTGTTCAGAAGGCAGCGGAGGACGTTGCTGCCGCTGAAGAAGGCAATCTGAGGGAACCTGAAGTACAAAACCCAGAGCAGACTGAGCCGAGAGTTACGGATACAGAGGAAGTGCGAGAGGAAAATACAGAGGAAGGTCAAGAAAAGCAGACTGAGGATGTGCAAGAAGAACAGACAGAGGTTGCGCCTGAAAAAGGTAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGTAATCATGCCAGAAGTGCCACGACGTCGCTGCGGGAAGCGAAAGGCCGATCGTGTCAGAGTAGTCCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAAAGAGAGAGGAACAGGAGAAAAAAGATGTCGAGGATAAAGAAGGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCGAAGGGCAGACAAGGGCAAGAGTGTTGCTGCGGCACCGGAGGAACCTGACGAGATAGAGGAGCCACAGTTGTTGTATGTTCGCTGCGTCAACAATCTTGTCAGAGCAAAATATGCTGAGCTGCTGAAGAGAGACTTCCTGATCGAGAGAGGATTTAGTGGTGATCTTCCACATTTTCTGAGGGTCGACATTACGAACCACGGTTGGGAATTATTTTGTTCAAAGCCTAAATCTGTGAGCGAATTTTATGCAAATATTGACAAAGAAGACGGTTTCCAATGGAGACTTTCGAAAACTGAGAAAAGAACGTTTCAGTCAGCCTATCTAAAGAGGGAAGCAAATACATGGATGGGATTTATCAAACAAAGGTTGCTTCCAACGACTCATGACTCGACGGTTTCTAGGGAACGGGTTCTTCTGGCGTTCGCGATTTTGAGGTCTCTCAGTATTGATGTGGGGGTTCCGGAGAATGAAGTAGATGTCATATTATTTGACAAGGGAATTATTGATACGCCTAACTTGGCACGGCTTCAGCGTACGCAAGAGGCACACCAGGGTGGGCTTATCTATGGCATCAACACGATTTTAGAACAACTAGCACTGTCGGCCAGCAGTCGTGATGTCAATCTGAAGAAGGCGCTACAGGAAAATTTTTCCAAACCATATCTAGCCCTTCCAGCATTCCCTGAGGAATTGTTTAACCCCTGGATTCCGCCCCCACCTGTGGAAAGAGAAGAAGATGATGATGAAGAGTAG

Coding sequence (CDS)

ATGGCAAAAACGAGAGCAAGAATAGAGCGGGAAAGTGAGGAAGAAGAGGTACCTGTTACCCCCGAAGTACAGAAAGTGAAAGCGAAGAAAAAGAAAACGCCAGAGGAAAAAGAAGCCAAAAGAAGGAGAAGGCAGCAGAGGGCTGAGGTTCAAGAAGCTGTTCAGAAGGCAGCGGAGGACGTTGCTGCCGCTGAAGAAGGCAATCTGAGGGAACCTGAAGTACAAAACCCAGAGCAGACTGAGCCGAGAGTTACGGATACAGAGGAAGTGCGAGAGGAAAATACAGAGGAAGGTCAAGAAAAGCAGACTGAGGATGTGCAAGAAGAACAGACAGAGGTTGCGCCTGAAAAAGGTAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGTAATCATGCCAGAAGTGCCACGACGTCGCTGCGGGAAGCGAAAGGCCGATCGTGTCAGAGTAGTCCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAAAGAGAGAGGAACAGGAGAAAAAAGATGTCGAGGATAAAGAAGGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCGAAGGGCAGACAAGGGCAAGAGTGTTGCTGCGGCACCGGAGGAACCTGACGAGATAGAGGAGCCACAGTTGTTGTATGTTCGCTGCGTCAACAATCTTGTCAGAGCAAAATATGCTGAGCTGCTGAAGAGAGACTTCCTGATCGAGAGAGGATTTAGTGGTGATCTTCCACATTTTCTGAGGGTCGACATTACGAACCACGGTTGGGAATTATTTTGTTCAAAGCCTAAATCTGTGAGCGAATTTTATGCAAATATTGACAAAGAAGACGGTTTCCAATGGAGACTTTCGAAAACTGAGAAAAGAACGTTTCAGTCAGCCTATCTAAAGAGGGAAGCAAATACATGGATGGGATTTATCAAACAAAGGTTGCTTCCAACGACTCATGACTCGACGGTTTCTAGGGAACGGGTTCTTCTGGCGTTCGCGATTTTGAGGTCTCTCAGTATTGATGTGGGGGTTCCGGAGAATGAAGTAGATGTCATATTATTTGACAAGGGAATTATTGATACGCCTAACTTGGCACGGCTTCAGCGTACGCAAGAGGCACACCAGGGTGGGCTTATCTATGGCATCAACACGATTTTAGAACAACTAGCACTGTCGGCCAGCAGTCGTGATGTCAATCTGAAGAAGGCGCTACAGGAAAATTTTTCCAAACCATATCTAGCCCTTCCAGCATTCCCTGAGGAATTGTTTAACCCCTGGATTCCGCCCCCACCTGTGGAAAGAGAAGAAGATGATGATGAAGAGTAG

Protein sequence

MAKTRARIERESEEEEVPVTPEVQKVKAKKKKTPEEKEAKRRRRQQRAEVQEAVQKAAEDVAAAEEGNLREPEVQNPEQTEPRVTDTEEVREENTEEGQEKQTEDVQEEQTEVAPEKGNEPVQEARVEVIMPEVPRRRCGKRKADRVRVVRTDTPSPPTTDSERENAKREEQEKKDVEDKEGEEAEKKAEEERLLKRRADKGKSVAAAPEEPDEIEEPQLLYVRCVNNLVRAKYAELLKRDFLIERGFSGDLPHFLRVDITNHGWELFCSKPKSVSEFYANIDKEDGFQWRLSKTEKRTFQSAYLKREANTWMGFIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGVPENEVDVILFDKGIIDTPNLARLQRTQEAHQGGLIYGINTILEQLALSASSRDVNLKKALQENFSKPYLALPAFPEELFNPWIPPPPVEREEDDDEE

Homology

The following BLAST results are available for this feature:

BLAST of Spg018233 vs.


Match Name	E-value	Identity	Description

BLAST of Spg018233 vs.


Match Name	E-value	Identity	Description

BLAST of Spg018233 vs.


Match Name	E-value	Identity	Description

BLAST of Spg018233 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..67
None	No IPR available	COILS	Coil	Coil	coord: 160..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018233.1	Spg018233.1	mRNA