Spg018208 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018208
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold3: 20657749 .. 20661154 (+)
RNA-Seq ExpressionSpg018208
SyntenySpg018208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGAGCGAATTCCGTCTTGCGAGATTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATACTGGCCACACTCACCCATGCAGATCAAATGATAATCTGGTATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGGTCATCTTTGATAAATAGTCAGTTTCTTCAGTAAACGGCGTTATAAAGAGAAAGTGACTAATTTCGTCGTCTAGTCTTATGCAAACTCATTGCATAGGATGCCCCCACTCGCATGTCTCCACATGAACGATTTAGGATCTCATCGTTTGTACTTAATACAAAGTGGGCCGCGTCCATAGTGTCCCCAGGATAAGGCACCCAACTGTATCCTTATACTATAGACTATTTTGACTATAAACTTGAACTTGATCCTACGATATGTCCCTACATATAGTTCGAGTATTCATTTAATAGTCAAGGATCTTAGTTTATTGGATTTAGGTTAATCATTCGCAATTTACATATTCAATAACATCTTTTACTGAATAACCTCAATAACGTCTTTATTTGAAATAGAATATGTTTAATGATTTACAAACAACGAGTTTATAGGACATTAAACCCAACAGTATCGGCATGGCACCATTCGAGGCTTTGTATGGCAGATCATGCAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAGCGAAAGCTAGTTGGTCTTGAGTTGATACAGGTTACGTCAGACAGTATCAAGCTGATTAAAGAGAACCTGAAAGTAGCTCAGGATCGACAGAAGAGCTATGCAGATAAGCGACGAAGAGACCTAGAATTCCAGGTTGGAGATCAAGTTTTCTTAAAGTTATCTCCGTGGAGAGGTGTTCTTCGCTTTGGGAGGAAAGGTAAGCTGAGTCCTAGATATATTGGTCCTTACCAGATAATAGAACGAGTTGGACCAGCAGCCTATAGACTTGAGTTGCCAGCGGAACTCGCTCGAATACATGATGTTTTTCATGTGTCCATGTTGAGGAAATATATTCCAGATCCATCCCATTTGTTGCAAGTGCAACCGATTGAGCTGAAAGAAGACTTGAGTTATAAAGAGGAAGTGGTTCAGATCCTCGACATAAAGGAGCAAGTTTTGAGGAACAAAACGATCACACTCGTGAAGGTTCTTTGGAGACATCACGGAGTGGAGGAGGCAACCTGGGAGTCAGAAGACCAGATGAGGACGAGTTACCCGACACTCTTCACCTAAGACTTCTAAATTTTGAGAACAAAATTTCATAAGGGGGAGGTAAGTTGTAAACCCGAGACTTTCCTTGGATTATTTTCTCTTTTCATCTATTGTAGAAGTTGAGTTAAAGTTGTTGTTATTCATTGTTGAAGAAAAATGGCAAAGTTTTGTGGTTCATTGTGGTTTCATGGTTGGAATTTGGTAATTTAAAAGAAGAAAGGAGTTAAAGGAAATGAATTAAAGAAAAAGAAAAGAAAAGTAAAAGAAAAGAAAAGGAAAGGTAAATAGGAAAATGAAAAAAAAAGAAAGAAAATGGGAAAAGACAGCAAACGGTGCTTAAAAACCCACCACCGACAAGATTTATTTATGCTCATTTTCAGCCCATTTTCCCATCTTTTTCCATCAAAACTTCAGAGCATTCGAGGGAGAGAGTGAAGGAAGGAGAGGAAGGAGCTTCGTAGGGTTTTGAGGTTGAAGAAGATAGGAAATAGCTCAAGCAAAGGCAGCCATGGTAGAATCTGGGTTCAACCCTCCTATCTTTGGTTTTTGATTCGGTTTGAGATACACAAAAAGAACTAAGAGGTGAGGTCTGATTTTCTTGAAAGTTAATCCATTTTCTAACAAATTTCATGAGGAAGCTTGAGCTAAATCTGATGATAAGTTAATGGATTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCAGTAGGTTCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCCATTTTGTATGGTGGGAAAGCTTATTCCATTTCCTATAACCTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAATTAGGTTTAATTTCAGGAGAAATATAGAGGGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGCACAAATCGGTTGGGAATGTCGTTTTCATTTCTTCAGGTATGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATATATAGTACATTAATTTTGGTCAAGTGTTGACGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAACCTGGAAAAGTAGAATGTGAAGTGTGATTTTTGATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAACTACTTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTAGAGTCTACGGACTAGGAAACTAGCCAAGACTGTGAGTGACAAAACAAATTTCGAAAATTGTTTCTAAACGATTGTTCATGATTAGATGTTTTATATGTTTTTCTATGAATGATACATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGCGGTTTATATACGAGCACATGGTTAATGACTTTATGAAAAGTAGGTGAAACGATATCATTTCAAGTAAAGTATGTATTAGCAAGTACTGTTTAAAGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAACAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACGAAGATATTGAGCTTGAGGCTATATGGTACCGTGTGCACACATGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTTCTGGGCGGGCCCCACTACATCGTAGAGCTATTAAACGTTGGTTGTACTGGGCGCGCCCTACACAACGTAGATCGGTCATGTTAGTTATGATGTTTGATATACTTGTTATGCCTTGCTAGATTTTCTAACGACGTACTTGTGGAGTATTCGTGAAAGCTTTTATCATTATATGTTTATGTTTAACGCTTTGATTGAGCAACCTTATACGTTTGAAGTTTTATCACGTGTTCTGATTTCCGGATTTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCACTCTTTCAAAATGTTTTCCCACTTTTCAGGTAAAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCCGTATTGTAAATGTTTTTGTAAGGATTGGATAA

mRNA sequence

ATGGGTAGGAGCGAATTCCGTCTTGCGAGATTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATACTGGCCACACTCACCCATGCAGATCAAATGATAATCTGGTATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGAGCACAGAATTTTCGTGCAAACCAGTAGGTTCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCCATTTTAGGGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGCACAAATCGGTTGGGAATGTCGTTTTCATTTCTTCAGATATTGAGCTTGAGGCTATATGGTACCGTGTGCACACATGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAAAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCCGTATTGTAAATGTTTTTGTAAGGATTGGATAA

Coding sequence (CDS)

ATGGGTAGGAGCGAATTCCGTCTTGCGAGATTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATACTGGCCACACTCACCCATGCAGATCAAATGATAATCTGGTATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGAGCACAGAATTTTCGTGCAAACCAGTAGGTTCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCCATTTTAGGGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGCACAAATCGGTTGGGAATGTCGTTTTCATTTCTTCAGATATTGAGCTTGAGGCTATATGGTACCGTGTGCACACATGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAAAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCCGTATTGTAAATGTTTTTGTAAGGATTGGATAA

Protein sequence

MGRSEFRLARLCPQLSIRSYPQNGRLVESAILATLTHADQMIIWYKQEFIVSSGLRTSYLEHRIFVQTSRFSGFLWFFEHSGVYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVRIG
Homology
[Close]
BLAST of Spg018208 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-12
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 0 

Query: 68  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIE 127
           +S+  GFL F +      V+K N KL+  +       + V         GN   + S  E
Sbjct: 20  SSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVM------LRGNRSSLQSG-E 79

Query: 128 LEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESV 187
           L+       T   PL TLSVLRDNDAVV+IELPVPDTLPTSAESS S+SSTW+ELY ESV
Sbjct: 80  LDT------TVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESV 128

[Close]
BLAST of Spg018208 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-12
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 0 

Query: 68  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIE 127
           +S+  GFL F +      V+K N KL+  +       + V         GN   + S  E
Sbjct: 20  SSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVM------LRGNRSSLQSG-E 79

Query: 128 LEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESV 187
           L+       T   PL TLSVLRDNDAVV+IELPVPDTLPTSAESS S+SSTW+ELY ESV
Sbjct: 80  LDT------TVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESV 128

[Close]
BLAST of Spg018208 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-12
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 138 PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR 193
           PL TLSVLRDNDAVV+IELP+PDTLPTSAESS S+SSTW+ELY ESV +  +F +
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYK 376

[Close]
BLAST of Spg018208 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-12
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 138 PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR 193
           PL TLSVLRDNDAVV+IELP+PDTLPTSAESS S+SSTW+ELY ESV +  +F +
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYK 376

[Close]
BLAST of Spg018208 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-11
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 138 PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRI 187
           PL TLSVLRDNDAVV+IELPVPDTLPTSAESS S+SSTW+ELY+E V +
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHV 68

[Close]
BLAST of Spg018208 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.8e-13
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 0 

Query: 68  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIE 127
           +S+  GFL F +      V+K N KL+  +       + V         GN   + S  E
Sbjct: 20  SSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVM------LRGNRSSLQSG-E 79

Query: 128 LEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESV 187
           L+       T   PL TLSVLRDNDAVV+IELPVPDTLPTSAESS S+SSTW+ELY ESV
Sbjct: 80  LDT------TVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESV 128

[Close]
BLAST of Spg018208 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.8e-13
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 0 

Query: 68  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIE 127
           +S+  GFL F +      V+K N KL+  +       + V         GN   + S  E
Sbjct: 20  SSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVM------LRGNRSSLQSG-E 79

Query: 128 LEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESV 187
           L+       T   PL TLSVLRDNDAVV+IELPVPDTLPTSAESS S+SSTW+ELY ESV
Sbjct: 80  LDT------TVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESV 128

[Close]
BLAST of Spg018208 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 138 PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR 193
           PL TLSVLRDNDAVV+IELP+PDTLPTSAESS S+SSTW+ELY ESV +  +F +
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYK 376

[Close]
BLAST of Spg018208 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 138 PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR 193
           PL TLSVLRDNDAVV+IELP+PDTLPTSAESS S+SSTW+ELY ESV +  +F +
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYK 376

[Close]
BLAST of Spg018208 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.0e-12
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 138 PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRI 187
           PL TLSVLRDNDAVV+IELPVPDTLPTSAESS S+SSTW+ELY+E V +
Sbjct: 20  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHV 68

The following BLAST results are available for this feature:
BLAST of Spg018208 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062409.11.6e-1247.54reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.11.6e-1247.54putative Retrotransposon protein [Cucumis melo var. makuwa][more]
TYK25935.14.7e-1274.55gag/pol protein [Cucumis melo var. makuwa][more]
KAA0040194.14.7e-1274.55gag/pol protein [Cucumis melo var. makuwa][more]
TYK27998.11.0e-1181.63reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg018208 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018208 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9N37.8e-1347.54Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY77.8e-1347.54Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7T9P72.3e-1274.55Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000... [more]
A0A5D3DR182.3e-1274.55Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032... [more]
A0A5D3DX395.0e-1281.63Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
BLAST of Spg018208 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018208.1Spg018208.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding