Spg018177 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018177
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionextensin-3-like
Locationscaffold9: 29111938 .. 29112498 (-)
RNA-Seq ExpressionSpg018177
SyntenySpg018177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTCTTTAATGGCCTCCCTTGCTATTGCAATTTTAGTGGCAACTCTAAGCTTGCCATCTACAATTGCTGAAGGGTATGAACCTTTCTTTACCCCTCCACCCCCTTCAGATTCTTCCAATGAGCCAACCGTGTCATCGATCGACTATGACTCGTCACCACCCGACTCTGTTATTATCGACTCACTACTACAAAATTACGACTCTCCTCCGTCACCCGACCATGTTATTGACTTGCCACCACCAGACTACGACTCTCTTCCACCACCCGATTTTGTTATCGACTCTCCACCTCCACCAAACAAGAAACCTCGTCCTCTTCCACGGCCACAACCTCGTCCTCTTCCACGGCCACCCAAGAAGAATCAGCCTCCTCCTCCTCCACCGCCGCCTCCTCTGCCGCCACCACCAAAGAAGAAGCCGTCTCGACCCCCACCACCACCGAAGAAGAAGCCATCTCGTCCTCCGCCGCCACCTAGAAGGGGATACAAGCCACCTCCACCCCCACCGCGAAAGTACACATTGCCTCCTCCTCCTCCACCATCTCCTTACTATTAG

mRNA sequence

ATGGGTTCTTCTTTAATGGCCTCCCTTGCTATTGCAATTTTAGTGGCAACTCTAAGCTTGCCATCTACAATTGCTGAAGGGTATGAACCTTTCTTTACCCCTCCACCCCCTTCAGATTCTTCCAATGAGCCAACCGTGTCATCGATCGACTATGACTCGTCACCACCCGACTCTGTTATTATCGACTCACTACTACAAAATTACGACTCTCCTCCGTCACCCGACCATGTTATTGACTTGCCACCACCAGACTACGACTCTCTTCCACCACCCGATTTTGTTATCGACTCTCCACCTCCACCAAACAAGAAACCTCGTCCTCTTCCACGGCCACAACCTCGTCCTCTTCCACGGCCACCCAAGAAGAATCAGCCTCCTCCTCCTCCACCGCCGCCTCCTCTGCCGCCACCACCAAAGAAGAAGCCGTCTCGACCCCCACCACCACCGAAGAAGAAGCCATCTCGTCCTCCGCCGCCACCTAGAAGGGGATACAAGCCACCTCCACCCCCACCGCGAAAGTACACATTGCCTCCTCCTCCTCCACCATCTCCTTACTATTAG

Coding sequence (CDS)

ATGGGTTCTTCTTTAATGGCCTCCCTTGCTATTGCAATTTTAGTGGCAACTCTAAGCTTGCCATCTACAATTGCTGAAGGGTATGAACCTTTCTTTACCCCTCCACCCCCTTCAGATTCTTCCAATGAGCCAACCGTGTCATCGATCGACTATGACTCGTCACCACCCGACTCTGTTATTATCGACTCACTACTACAAAATTACGACTCTCCTCCGTCACCCGACCATGTTATTGACTTGCCACCACCAGACTACGACTCTCTTCCACCACCCGATTTTGTTATCGACTCTCCACCTCCACCAAACAAGAAACCTCGTCCTCTTCCACGGCCACAACCTCGTCCTCTTCCACGGCCACCCAAGAAGAATCAGCCTCCTCCTCCTCCACCGCCGCCTCCTCTGCCGCCACCACCAAAGAAGAAGCCGTCTCGACCCCCACCACCACCGAAGAAGAAGCCATCTCGTCCTCCGCCGCCACCTAGAAGGGGATACAAGCCACCTCCACCCCCACCGCGAAAGTACACATTGCCTCCTCCTCCTCCACCATCTCCTTACTATTAG

Protein sequence

MGSSLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDSLLQNYDSPPSPDHVIDLPPPDYDSLPPPDFVIDSPPPPNKKPRPLPRPQPRPLPRPPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPPPPPRRGYKPPPPPPRKYTLPPPPPPSPYY
Homology
BLAST of Spg018177 vs. NCBI nr
Match: KAG6592193.1 (hypothetical protein SDJN03_14539, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-04
Identity = 91/191 (47.64%), Postives = 102/191 (53.40%), Query Frame = 0

Query: 4   SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDS 63
           S++  L I + V  LSL ST AEGY+ +++PPPP   S  P V      SSPP       
Sbjct: 5   SIIVHLVIVVFVVALSLSSTSAEGYDDYYSPPPPVYYSPPPPVKY----SSPP------- 64

Query: 64  LLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDS--PPPPNKKPRPLPRPQPRPLPR 123
             + Y SPP P   D     PPP     PPP  V  S  PPPP KK  P P P+  P P 
Sbjct: 65  --RVYYSPPPPKKDDEDKSPPPPPPKKTPPPPEVKKSPPPPPPRKKSPPPPAPKKSPPPP 124

Query: 124 PPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPP---PPPRRGYKPPPPPPRKYT 183
           PP+K  PPPP   PP PPPPKK P  PPPP KK P  PP   PP     K PPPP  +Y 
Sbjct: 125 PPRKKSPPPPKKSPPPPPPPKKSP--PPPPQKKSPPPPPKKSPPQPEPKKSPPPPSPEYK 179

Query: 184 LPPPPPPSPYY 187
             PPPPPSPYY
Sbjct: 185 W-PPPPPSPYY 179

BLAST of Spg018177 vs. NCBI nr
Match: XP_022976650.1 (extensin-3-like [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-03
Identity = 77/174 (44.25%), Postives = 90/174 (51.72%), Query Frame = 0

Query: 4   SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDS 63
           S++  L IA+ V  LS  ST AEGY+ +++PPPP           + Y S PP +     
Sbjct: 5   SIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPP-----------VKYSSPPPPA----- 64

Query: 64  LLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDSPPPPNKKPRPLPRPQPRPLPRPP 123
               Y SPP P   D     PPP+    PP       PPPP KKP P P P+  P P PP
Sbjct: 65  ----YYSPPPPKKDDEYKSPPPPEVKKSPP-------PPPPRKKPPPPPAPKKSPPPPPP 124

Query: 124 KKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPPPPPRRGYKPPPPPPRKY 175
           +K  PPPP P    PPPP +K S PPPPPKK     PPPP   YK PPPPP  Y
Sbjct: 125 RKKSPPPPAPKKSPPPPPPRKKSPPPPPPKKS----PPPPSPVYKSPPPPPSPY 147

BLAST of Spg018177 vs. ExPASy TrEMBL
Match: A0A6J1IK20 (extensin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111476989 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-04
Identity = 77/174 (44.25%), Postives = 90/174 (51.72%), Query Frame = 0

Query: 4   SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDS 63
           S++  L IA+ V  LS  ST AEGY+ +++PPPP           + Y S PP +     
Sbjct: 5   SIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPP-----------VKYSSPPPPA----- 64

Query: 64  LLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDSPPPPNKKPRPLPRPQPRPLPRPP 123
               Y SPP P   D     PPP+    PP       PPPP KKP P P P+  P P PP
Sbjct: 65  ----YYSPPPPKKDDEYKSPPPPEVKKSPP-------PPPPRKKPPPPPAPKKSPPPPPP 124

Query: 124 KKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPPPPPRRGYKPPPPPPRKY 175
           +K  PPPP P    PPPP +K S PPPPPKK     PPPP   YK PPPPP  Y
Sbjct: 125 RKKSPPPPAPKKSPPPPPPRKKSPPPPPPKKS----PPPPSPVYKSPPPPPSPY 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6592193.13.4e-0447.64hypothetical protein SDJN03_14539, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022976650.11.0e-0344.25extensin-3-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IK204.8e-0444.25extensin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111476989 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018177.1Spg018177.1mRNA