Spg018107 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018107
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon protein, putative, CACTA, En/Spm sub-class
Locationscaffold9: 30660095 .. 30661736 (+)
RNA-Seq ExpressionSpg018107
SyntenySpg018107
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATACGTGGAGGGTGATGTTGCAGTACGTGGTTCCTCGATGGAGCGGAACACTAGATGACGAGGGTCAGGTAATTATTGTTTCTACTAAACCTATTCTTACAAAAAAAAAAGTATTTTACTTATGAAATCAGCTAAAATGGTGTTCGTTTCAGGCTCGAGATCGTGAGGAAGGTGAGTAAAGGGGCATACTCGGAACATTGACTTAGATCGTTATGTCGCGGCATATGGTAGGATACCCATCGAGATTAGAGAGGATGTCGGCAAACCAGTATGTGGGTGGGCCACAAGGTTCAGTGGGGTCATAGGTACTATCACACGGGATTCAATTCCCCTAAGCTGCTCGAACTAGAGGGAGGTCTCAAAGGAGGTGCGAGACGGCATAAAGAATCGACTATGTGTAAGTTTACGCGTTTATACATTCATGATTTCACTATTATTTGAATTATACGAACATGCTTACAAATTGAGTATTGACCATGCTGACATATTTTATTGTGGACTTATCAAAAAGGGTTGTCCAGAGGTTCATTGAACGACAAATATCGTCGACCTTCAAGGAATATAGAGTGGAGCTACATAAACATTATTGTTTGTTTGAGGACCCTGCGGATGCCCATTTAAATCCATATGAGCGAGTTGCAAATCCTGCAGATTGGCTTCTCTTATGTGACAAATCGGAGACCCCTGAATGGAAGGTACGTTTTTTGTTATTGCTGTTCAAGTAACTGTTGGGTTTTATGCCCTAAAACTCGTAGATAATGAATGTAAACAAATTTTATACTTGTATTTAATAAAGTGTTATTTAGTTTCTGCAATAAAATGTTATTGTTAAATATTGCACTATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTATGTAACTTGAACTAGTATGTGGGGACATACGGGGATCGATGTTCAAGTAACAACCTAAAAGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGGCCCGCTTTGTATTATGATACAAACGCTATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGAGTATCCTATGCAATGAGTTTGCATAAGATCGGACCACGAAATAGTTAACCACTAACTGTAACACCGTTAGTTGGCTTGGTTTCTATTTCACTAGGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGATTCTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGACTTGAACAATGGGCCCAACCCTCTCTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGGGACCTAAGGACAAAGATGTAAACCAGGGGTAAAACGGTAATTTGACCCAGCTGGGATACGAACACACGTGAAGGACTGACTTGTAGTATTGGTCGATATCCGTGGACACAGAAATATTCTGCAGTGAGAAGAGTGCAGCTGAGGGTCTTTAG

mRNA sequence

ATGTATACGTGGAGGGTGATGTTGCAGTACGTGGTTCCTCGATGGAGCGGAACACTAGATGACGAGGGTCAGGCTCGAGATCGTGAGGAAGTATTGACCATGCTGACATATTTTATTGTGGACTTATCAAAAAGGGTTGTCCAGAGGTTCATTGAACGACAAATATCGTCGACCTTCAAGGAATATAGAGTGGAGCTACATAAACATTATTGTTTGTTTGAGGACCCTGCGGATGCCCATTTAAATCCATATGAGCGAGTTGCAAATCCTGCAGATTGGCTTCTCTTATGTGACAAATCGGAGACCCCTGAATGGAAGGTACGTTTTTTGTTATTGCTGTTCAAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGGCCCGCTTTGTATTATGATACAAACGCTATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGAGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGAGGGTCTTTAG

Coding sequence (CDS)

ATGTATACGTGGAGGGTGATGTTGCAGTACGTGGTTCCTCGATGGAGCGGAACACTAGATGACGAGGGTCAGGCTCGAGATCGTGAGGAAGTATTGACCATGCTGACATATTTTATTGTGGACTTATCAAAAAGGGTTGTCCAGAGGTTCATTGAACGACAAATATCGTCGACCTTCAAGGAATATAGAGTGGAGCTACATAAACATTATTGTTTGTTTGAGGACCCTGCGGATGCCCATTTAAATCCATATGAGCGAGTTGCAAATCCTGCAGATTGGCTTCTCTTATGTGACAAATCGGAGACCCCTGAATGGAAGGTACGTTTTTTGTTATTGCTGTTCAAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGGCCCGCTTTGTATTATGATACAAACGCTATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGAGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGAGGGTCTTTAG

Protein sequence

MYTWRVMLQYVVPRWSGTLDDEGQARDREEVLTMLTYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYERVANPADWLLLCDKSETPEWKVRFLLLLFKDKAGYLILVTLWIRPALYYDTNAMIQRVHVVDMRVGDDLDNSVSILSGLWTPVHEELSFDLYGEKSAAEGL
Homology
BLAST of Spg018107 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-17
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 37  YFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYERVANPADWLLL 96
           +F VDLSKRVV +FIE+Q+  +FK+YR +LH++YC FEDP +A  NP ER+ NP DW  L
Sbjct: 20  HFRVDLSKRVVNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLTNPEDWNHL 79

Query: 97  CDKSETPEWK 107
           CD+ ETPEWK
Sbjct: 80  CDRWETPEWK 89

BLAST of Spg018107 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-13
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 31  VLTMLTYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYERVANP 90
           +LTM +YF  D+ K+ V++++ +++ +TFKEYR +L+KHY  F+DP +A   P +R+ + 
Sbjct: 478 LLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA 537

Query: 91  ADWLLLCDKSETPEWK 107
            DW LLC++ ETPEWK
Sbjct: 538 TDWNLLCNRWETPEWK 553

BLAST of Spg018107 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-13
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 31  VLTMLTYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYERVANP 90
           +LTM +YF  D+ K+ V++++ +++ +TFKEYR +L+KHY  F+DP +A   P +R+ + 
Sbjct: 666 LLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA 725

Query: 91  ADWLLLCDKSETPEWK 107
            DW LLC++ ETPEWK
Sbjct: 726 TDWNLLCNRWETPEWK 741

BLAST of Spg018107 vs. NCBI nr
Match: XP_038887411.1 (poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412.1 poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-13
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 31  VLTMLTYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYERVANP 90
           +LTM +YF  D+ K+ V++++ +++ +TFKEYR +L+KHY  F+DP +A   P +R+ + 
Sbjct: 666 LLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA 725

Query: 91  ADWLLLCDKSETPEWK 107
            DW LLC++ ETPEWK
Sbjct: 726 TDWNLLCNRWETPEWK 741

BLAST of Spg018107 vs. NCBI nr
Match: XP_038887410.1 (poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-13
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 31  VLTMLTYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYERVANP 90
           +LTM +YF  D+ K+ V++++ +++ +TFKEYR +L+KHY  F+DP +A   P +R+ + 
Sbjct: 666 LLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA 725

Query: 91  ADWLLLCDKSETPEWK 107
            DW LLC++ ETPEWK
Sbjct: 726 TDWNLLCNRWETPEWK 741

BLAST of Spg018107 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 37  YFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYERVANPADWLLL 96
           +F VDLSKRVV +FIE+Q+  +FK+YR +LH++YC FEDP +A  NP ER+ NP DW  L
Sbjct: 20  HFRVDLSKRVVNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLTNPEDWNHL 79

Query: 97  CDKSETPEWK 107
           CD+ ETPEWK
Sbjct: 80  CDRWETPEWK 89

BLAST of Spg018107 vs. ExPASy TrEMBL
Match: A0A5A7TRX4 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001040 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 28  REEVLTML-TYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYER 87
           RE V+  L T+F  D +  VV++++E ++ +TF+E+R +LHK+YC F+D  +A  NP  R
Sbjct: 761 RELVIDWLETHFEFDPTNMVVRKYLEEKMQNTFREFRADLHKYYCQFDDLVEARANPRNR 820

Query: 88  VANPADWLLLCDKSETPEWK 107
           + +  DW ++CD+ ET  WK
Sbjct: 821 ITH-EDWNMMCDRWETDAWK 839

BLAST of Spg018107 vs. ExPASy TrEMBL
Match: A0A5A7US78 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001230 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.7e-10
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 28  REEVLTML-TYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYER 87
           RE V+  L T+F  D +  VV++++E ++ +TF+E+R  LHK+YC F+D  +A  NP  R
Sbjct: 538 RELVIDWLETHFEFDPTNMVVRKYLEEKMQNTFREFRANLHKYYCQFDDSVEARANPPNR 597

Query: 88  VANPADWLLLCDKSETPEWK 107
           + +  DW ++CD+ ET  WK
Sbjct: 598 ITH-EDWNMMCDRWETDAWK 616

BLAST of Spg018107 vs. ExPASy TrEMBL
Match: A0A5A7TFG0 (Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00210 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-09
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 28  REEVLTML-TYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYER 87
           RE V+  L T+F  D +  VV++++E ++ + F+E+R +LHK+YC F+D  +A  NP  R
Sbjct: 741 RELVIDRLETHFEFDPTNMVVRKYLEEKMQNIFREFRADLHKYYCQFDDSVEARANPPNR 800

Query: 88  VANPADWLLLCDKSETPEWK 107
           +    DW ++CD+ ET  WK
Sbjct: 801 ITY-EDWNMMCDRWETDAWK 819

BLAST of Spg018107 vs. ExPASy TrEMBL
Match: A0A438JBT2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_023696 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.5e-09
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 32  LTMLTYFIVDLSKRVVQRFIERQISSTFKEYRVELHKHYCLFEDPADAHLNPYERVANPA 91
           LTM   F +DL++  V++ +E+Q+S  F+ +R +LHKH+  F    +A  NP++ V+N  
Sbjct: 89  LTMKEKFALDLTQEHVKKSLEKQLSDRFRNWRCDLHKHFKKFPTVVEAKRNPHKSVSNQE 148

Query: 92  DWLLLCDKSETPEWKVRF 110
           DW  LCD+  + E+KV+F
Sbjct: 149 DWDYLCDRFSSEEFKVKF 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156286.12.1e-1761.43uncharacterized protein LOC111023212 [Momordica charantia][more]
XP_038887413.16.9e-1346.05uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida][more]
XP_038887408.16.9e-1346.05poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida][more]
XP_038887411.16.9e-1346.05poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412... [more]
XP_038887410.16.9e-1346.05poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DUH31.0e-1761.43uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7TRX45.9e-1041.25DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7US787.7e-1041.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TFG05.0e-0940.00Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuw... [more]
A0A438JBT26.5e-0939.74Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_023696 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018107.1Spg018107.1mRNA